TCONS_00022296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022296
Unique NameTCONS_00022296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022296 ID=TCONS_00022296|Name=TCONS_00022296|organism=Clytia hemisphaerica|type=transcript|length=697bp
TTAGAGGCGAGATACCATCATGGTCATGGACTTTCATCCAGGggAAGGGC
TTGATGCGTTAGAACTGGATCAACTCATGGAGAAAATCAAAgtgcttgaa
aatgaaaatgctaaGATGAAAGAAACTCTTGcagagaaagaaaagaaaga
aaatcagGACAAAGAAAAAGTCATTTCAGCAAGTCCCAAAGCTCAGAAGG
TTGTTCGCACGTCCACTAAGCCTGTTGAAAAGATCGATTTTCGAGATTTG
GACATTGGCAGTTTGGTCGTGTTGTGTTATGACGATACGACGCATCATTA
TGTAGCATTAACGGTAGCCGATGAACGAGTTTTCCTTCATCCAGAATCAC
AAAAAGAAATACTCTCGCGACGAGGAGCACCAGAGAAAAGGCAATGGATG
ATTGCATGCATCACACAGAAAGAGACTTGTATAGCTAAAAAGGCGATCAA
CTCTTTCAACCTTCCAGTCAACACTTACTTCTCACGCATCCATGTCAAGG
TGCACGAAGATTATCGTTGAAAATGCTTTAATTCATTCACTCACTAAACG
ATCTGGTGCTTTGTTTGGtttacatatttattttttctttaaatctcGTA
TGCGTTTAACGTTGATTTTCAGCCTTCATTTTCTCAATTAGCGCTTTTAA
cgcatttttcaaatattagtGGATGTCGTATGATTTTGTTACACATC
Run BLAST on NCBI

transcript from alignment at sc0000411:149555..153738+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022296 ID=TCONS_00022296|Name=TCONS_00022296|organism=Clytia hemisphaerica|type=transcript|length=4184bp|location=Sequence derived from alignment at sc0000411:149555..153738+ (Clytia hemisphaerica)
TTAGAGGCGAGATACCATCATGGTCATGGACTTTCATCCAGGGTATgaat
gatttgatttgatttatgaaaaaaaatgtttgatggTGTAACCTTTAAAG
AATAACATGTTATTTcacttgattttctttctttttcagggAAGGGCTTG
ATGCGTTAGAACTGGATCAACTCATGGAGAAAATCAAAgtgcttgaaaat
gaaaatgctaaGATGAAAGAAACTCTTGcagagaaagaaaagaaagaaaa
tcagGACAAAGAAAAAGGTCGGTTGAATTAGTGCTGTTTAATTTAAAAGG
TATTTTTCTGCGAATACTAGATCCGATGGTAATTATTAAATGTGTACTAT
GTTGAAGAGCTCTAATTGAAAATTTGATGGCTTCAGTTTCTAAAGAACAT
TTGTTATTGTTTTCGCAGTCGAACATCCCTGGCATAACTAATTTTTCACT
CAATAATTATTATATTTGCTTCTCCTTTTCAGTCATTTCAGCAAGTCCCA
AAGCTCAGAAGGTTGTTCGCACGTCCACTAAGCCTGTTGAAAAGATCGAT
TTTCGAGAGTAAGTTCACCTTGACCCTCCATTGTCAGTCCCCGCCTCAAT
GCTTTTAAATCGATGTCCGAGTTTTTCCCTTCAGCGTAGCAGTTTTGACT
TCCCGGTGATGAATGGTGAAGTATTTTCCTGAATTATCCGAAACAGCTTA
TTCTTCCTCTGCGGGAAGTTTCTTTCCAAATTCGTAAGACTCTTCCCGAT
CGAGCTAGTAGTAGTACTAGTATGTAGTATTTACTTCCCTATTAATGAGC
TTGACATCTTTTGTCTCGTTTCAGTTTGGACATTGGCAGTTTGGTCGTGT
TGTGTTATGACGATACGACGCATCATTATGTAGCATTAACGGTAGCCGAT
GAACGAGTTTTCCTTCATCCAGAATCACAAAAAGAAATACTCTCGCGTAT
GCATACTACCTTCTTTTCGTGATACAACATACAATGTCTTTGAAGTGTCC
TTAAGATGCCACTAAAAAGTTCCCTCTCAAACTGACTCTGCTAGCAGGAG
TAAAAGGTTTTTATTAAATGATGCACCATCGAATTTTCAGAGAAGATCAG
ACTTGGCTTTAAATTAGTGGATTTGCGAATGACTGAAAGAGTTTTGACCT
CAGTTAAGTAAGGAGAGGTGAAGAGAGTCATCTTAGTTCGAATAACTTCC
AAGTTTGTTTGAGTTTGAATAACGGAGACCATGCTTCATTTTAATGACCA
CTATCTTGCTTTTTTGTTACAGGACGAGGAGCACCAGAGAAAAGGTTCGT
TGTCTTaatccttttctttttctttttcattgagCTCCACTTCTTCTGGT
TTATATTCTTTTAGTGTAAGGTACACGTTGGTTTGTATGCTTTGTTGTTG
ATATGCGCaatcatggcgttctaaatctacaaAGCCTATCAAGCGTGCAG
CGACTTCGATTTTTTGGGGCTCAATTTCTCACCAAAATCTGTTTCCTTCT
AACTTTTCTCATTGTTCTCAAGCTAACGAAGAGACGTCGCAATGCAAcgt
attcaaatattttcagaaaatgatcTGTGTCTATTGCGATCATGAGAAGC
AATGATGTAGTTTTTGATTTCTCCAATGAAATAATCGTAGAGAGAGCTTA
GAGAAAAAGGAAATAGAAAATCATCAATTTAGAAGatctttttttcttaa
aagtaaAATGACCCTTCTTTCAGGCAATGGATGATTGCATGCATCACACA
GAAAGAGACTTGTATAGCTAAAAAGGTACGTGTTAACTTTTACGAAGCAG
TTTGGAATGCTTGCTCCCTGTTAAGGTCCGTCCATTTCATTTACATAATC
GTTGACGAATTTTGCGACGGATATCAATTGGACTAGCGTAACTCGTAAAT
GCGTATATtcgtaaaatataaatataaattcgtaaaatataaatataaat
tcgTAACTGTGCATTCGTAATTGTAACACTATACCCTACACTTATATACC
CTAAGTAAGATTATCTCAAAAGTTCGATTCTAGAAATTATGTACAGAGCT
CATGCACTGAGTCATTTATTGAATGTCCTCaattaaaagaatgtttacat
GCGCATTTTCATGAATTTGCTGAGTCATTGTTCCAATGTTCTACAAGCAA
TATCGCGTTCGCGACACCCTTCAAGTAGAACGGACCAGGCAATAAAATGA
ACGTCACGAAATGCTCTCGATAAACTACCATAAGCTTTTTTGTACCCTCT
GACAAATAGTGTTTACTATTCCTTGTACTTTCTATGGGCCATGGCTTTGG
CAAAGTTCCATAAGGGGGGGCTTCCTGCACTTTCTAAAAAAGAGAGCAAT
TTTATATCAAGAGATCGTACAACGGAGAGCCTTTACCTgaccttaagggc
tctgaccatagtcagaagatcggttatgagatttgaagataaaacttgtg
ttttgaatccCTTTACACTTTTAACAAGAAACTGTCTTTATAAGCTGTTT
GTGAATTTATTCAATCAAGAGTGATTagcaatttaattacaaaaatgacg
ttatgaaccttAAAACGAcgttaaaaaatgttatatgaCCATCtattaca
aaaagtgcttagttttaatggattaacctttttgtttcaatttttttaag
ggctctggtcatagtgaaaaatcaatttcagagtTTGAACATAAAACCTT
aggttttcgcttctttgacatgcttttgaaaaaatgattttgatgttgGG
ATTTGCCGAAATGGGCACTTTCCATTCCTTTGCCGCAAAATTTAacactt
ctacaaagattttgtattagatggtttgaaatgaaaaaggataatagtta
aaaacttttctatgttgaaaaataactattcaacaatgttcaactcaaaa
ttatagtcctcggctgatacttcatatattattcagaaaatgaagtcaaa
tTCGCTACCttttgcccatgtcggcatatgccgacatctggcaaataggt
cgaaccttctttttttcccgtaaaaaatacgaacggcagttaaagggttt
aagtaattacattacgagtaattaaggaataagtgtggcgtggaccttaa
taaaacgtcaaaacgacgctattcatacttttcacaaaaaagcctaatct
ccttggggaaatcattttattgtttcaaaataatttctttatttagattt
tttcggaaaaattttctatttggctacatcccaagttatagctgtttttg
tatggaaatttagtggagaaaattgccaaaaatgaggttttttagagatt
ttaaaggaaagatacttccacaaaaatatcccgaaattgtatttttagat
actaaatagatacataacctgaaccaaaaaaaaatccaaaatgtttgatt
tttaccgagattagggtgctttgaaaggtgaaatactcttcttcgaaaaa
ctttttaaattctaaaaagataggtttaacaggacatataaaaaaagtta
tacattaatctttttaaaatgcagaaattgtgatttaagttggtgtaaaa
tcgaaaaattgtccAGAGTCCTTAATTGTCTGCAAAAGATTGTATTTAAA
Aactttcggaaaatttttctaaattaatgtatgaaaagttatgactgctt
ttgtacaaaaattttcaaaatgtttctcAAAATTGACATACTTGTTGAAT
TATTTCGCGAAagttttcactttcttcttcatcaaatttaataattgcaa
ttttaaaattttcagattcaagaatagttggcttaacagaaaatgtataa
catgccatagttttgttggttacataagtcagaaaaacacattttataca
ctacaaatatgaaaaattcattATGCCCTTAACCTTATCTTTGGACTATC
AAATAATTTGTCATAACATTTCGTTTCAGGCGATCAACTCTTTCAACCTT
CCAGTCAACACTTACTTCTCACGCATCCATGTCAAGGTGCACGAAGATTA
TCGTTGAAAATGCTTTAATTCATTCACTCACTAAACGATCTGGTGCTTTG
TTTGGtttacatatttattttttctttaaatctcGTATGCGTTTAACGTT
GATTTTCAGCCTTCATTTTCTCAATTAGCGCTTTTAAcgcatttttcaaa
tattagtGGATGTCGTATGATTTTGTTACACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012509XLOC_012509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022296-exon-sc0000411-1491911889:149555..149596TCONS_00022296-exon-sc0000411-1491911889:149555..149596Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:149555..149596TCONS_00022296-exon-sc0000411-1510915933:149555..149596Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:149555..149596TCONS_00022296-exon-sc0000411-1575043694:149555..149596Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1491911889:149694..149821TCONS_00022296-exon-sc0000411-1491911889:149694..149821Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:149694..149821TCONS_00022296-exon-sc0000411-1510915933:149694..149821Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:149694..149821TCONS_00022296-exon-sc0000411-1575043694:149694..149821Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1491911889:150037..150112TCONS_00022296-exon-sc0000411-1491911889:150037..150112Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:150037..150112TCONS_00022296-exon-sc0000411-1510915933:150037..150112Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:150037..150112TCONS_00022296-exon-sc0000411-1575043694:150037..150112Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1491911889:150379..150500TCONS_00022296-exon-sc0000411-1491911889:150379..150500Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:150379..150500TCONS_00022296-exon-sc0000411-1510915933:150379..150500Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:150379..150500TCONS_00022296-exon-sc0000411-1575043694:150379..150500Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1491911889:150827..150848TCONS_00022296-exon-sc0000411-1491911889:150827..150848Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:150827..150848TCONS_00022296-exon-sc0000411-1510915933:150827..150848Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:150827..150848TCONS_00022296-exon-sc0000411-1575043694:150827..150848Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1491911889:151278..151329TCONS_00022296-exon-sc0000411-1491911889:151278..151329Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:151278..151329TCONS_00022296-exon-sc0000411-1510915933:151278..151329Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:151278..151329TCONS_00022296-exon-sc0000411-1575043694:151278..151329Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1491911889:153484..153738TCONS_00022296-exon-sc0000411-1491911889:153484..153738Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1510915933:153484..153738TCONS_00022296-exon-sc0000411-1510915933:153484..153738Clytia hemisphaericaexon
TCONS_00022296-exon-sc0000411-1575043694:153484..153738TCONS_00022296-exon-sc0000411-1575043694:153484..153738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:149555..153738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.29914	6.61237	1.72426	3.78715	0	0	0	0	0	0	0	0	0	0	0.385083	0	0.351137	0	1.69799	0	0	0	3.82578	0.372908	24.9938	5.21393	1.50825	0	0.448247	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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