TCONS_00022289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022289
Unique NameTCONS_00022289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022289 ID=TCONS_00022289|Name=TCONS_00022289|organism=Clytia hemisphaerica|type=transcript|length=318bp
NGCTTTGTTTTGATGTCTGTAGCTTGATTTTATAACTAATGGTGAATCTT
TCAAAGTAGGTTCTCGAGGTGTCTCGGTTTGTACTTCCATATCAACAGTA
TGCTTCACTGGTTGTTTTATCTTTTTAGTCTGTTCATTGTTGTATGTTTC
AAGTTGAGTTGAATTAGGACTGTTTTTAATGAGTTCAGCTTTGTTTTCCT
TTAGGTCGTGGCTTTCAGTTTGCATGGATAAATCAGCGAGGGTGCTATTT
GTGTGTTTAGATGCTGATTGTTGCAGGTAAGATTCAAGTTTTTTGCTATT
CAAACCAACAGTAGGCNC
Run BLAST on NCBI

protein sequence of TCONS_00022289-protein

>TCONS_00022289-protein ID=TCONS_00022289-protein|Name=TCONS_00022289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
XPTVGLNSKKLESYLQQSASKHTNSTLADLSMQTESHDLKENKAELIKNS
PNSTQLETYNNEQTKKIKQPVKHTVDMEVQTETPREPTLKDSPLVIKSSY
RHQNKX
Run BLAST on NCBI

transcript from alignment at sc0000410:210070..210387

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022289 ID=TCONS_00022289|Name=TCONS_00022289|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at sc0000410:210070..210387 (Clytia hemisphaerica)
GNGCCTACTGTTGGTTTGAATAGCAAAAAACTTGAATCTTACCTGCAACA
ATCAGCATCTAAACACACAAATAGCACCCTCGCTGATTTATCCATGCAAA
CTGAAAGCCACGACCTAAAGGAAAACAAAGCTGAACTCATTAAAAACAGT
CCTAATTCAACTCAACTTGAAACATACAACAATGAACAGACTAAAAAGAT
AAAACAACCAGTGAAGCATACTGTTGATATGGAAGTACAAACCGAGACAC
CTCGAGAACCTACTTTGAAAGATTCACCATTAGTTATAAAATCAAGCTAC
AGACATCAAAACAAAGCN

Coding sequence (CDS) from alignment at sc0000410:210070..210387

>TCONS_00022289 ID=TCONS_00022289|Name=TCONS_00022289|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000410:210070..210387 (Clytia hemisphaerica)
GNGCCTACTGTTGGTTTGAATAGCAAAAAACTTGAATCTTACCTGCAACA
ATCAGCATCTAAACACACAAATAGCACCCTCGCTGATTTATCCATGCAAA
CTGAAAGCCACGACCTAAAGGAAAACAAAGCTGAACTCATTAAAAACAGT
CCTAATTCAACTCAACTTGAAACATACAACAATGAACAGACTAAAAAGAT
AAAACAACCAGTGAAGCATACTGTTGATATGGAAGTACAAACCGAGACAC
CTCGAGAACCTACTTTGAAAGATTCACCATTAGTTATAAAATCAAGCTAC
AGACATCAAAACAAAGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012504XLOC_012504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022289-exon-sc0000410-1491911889:210070..210387TCONS_00022289-exon-sc0000410-1491911889:210070..210387Clytia hemisphaericaexon
TCONS_00022289-exon-sc0000410-1510915933:210070..210387TCONS_00022289-exon-sc0000410-1510915933:210070..210387Clytia hemisphaericaexon
TCONS_00022289-exon-sc0000410-1575043694:210070..210387TCONS_00022289-exon-sc0000410-1575043694:210070..210387Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022289-proteinTCONS_00022289-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:210070..210387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.935889	0	0	0.0731293	7.67273	4.09066	5.20891	7.17094	1.86882	1.71188	3.60347	1.93128	2.18389	2.03158	0.529088	0.552114	1.06541	1.20353	0	0	0	0	1.1167	1.27304	7.94162	11.9295	0	0	1.20449	1.83562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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