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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022283 ID=TCONS_00022283|Name=TCONS_00022283|organism=Clytia hemisphaerica|type=transcript|length=791bp
GATAATCAGGGTGTTCTCGTGTTATCAGTCTAGATTTAATCATACTTTCA
TCATTACTATTCAATTCACCTACTCTTACATTGTTCAAGAGATCAATGAA
GTCAGAGTCATCCTTTTGACGCATAATCTCATCTAATTCAGCTAGTTTGA
ATAGGTGCCATAATTTGCATGCACCAATAATAGGCccctcagttgaaaat
actgaactttaaaaaattggagGTAATTGAAAGAGGTCTCCACAAACAAT
GATACTTTTCCCTGCAAATGGTGTGTTGTCATTTACACCAAAAATTTCAC
ACAATCTTGTATGGATGTTCAAAAGCTGTTGCGACGAAATCATAGACATT
TCATCAATTATTATCAACTTTACATGATGTAATTTATTTCCAATTGCAGT
CCTTTGTTTGTCAGCcatatttctgaattttccaACTGGAATACTCAATC
CTGTGTGTACTGTGGTGCCAGATATATTGATAGCTGCTATACCAGTTGGG
GCCAATTTAATAATACGTGGCTTCTCTAGCTCATCACTTTTATATGCTAA
GACTTTTGACAAACAATTGTAAACACATTTAATTAAGTGAGATTTTCCTA
CGCCCGCACCACCtgttaaaaatattctcaatggtTCTAGTAGTATAGGA
TTATTTGACTTGGAACTTTGCACATACATTTATCCCCAATTTTGTACTAT
ATCAAAAATATCTCTTTGCTTAGAATTTAAAGATCTTATATGGGTATTGA
TTTGGTCATCAGTTTGCAAGCAATGAACTGTTTGAGTAAAT Run BLAST on NCBI protein sequence of TCONS_00022283-protein >TCONS_00022283-protein ID=TCONS_00022283-protein|Name=TCONS_00022283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MYVQSSKSNNPILLEPLRIFLTGGAGVGKSHLIKCVYNCLSKVLAYKSDE
LEKPRIIKLAPTGIAAINISGTTVHTGLSIPVGKFRNMADKQRTAIGNKL
HHVKLIIIDEMSMISSQQLLNIHTRLCEIFGVNDNTPFAGKSIIVCGDLF
QLPPIF Run BLAST on NCBI transcript from alignment at sc0000410:18942..19732 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022283 ID=TCONS_00022283|Name=TCONS_00022283|organism=Clytia hemisphaerica|type=transcript|length=791bp|location=Sequence derived from alignment at sc0000410:18942..19732 (Clytia hemisphaerica)
ATTTACTCAAACAGTTCATTGCTTGCAAACTGATGACCAAATCAATACCC
ATATAAGATCTTTAAATTCTAAGCAAAGAGATATTTTTGATATAGTACAA
AATTGGGGATAAATGTATGTGCAAAGTTCCAAGTCAAATAATCCTATACT
ACTAGAaccattgagaatatttttaacaGGTGGTGCGGGCGTAGGAAAAT
CTCACTTAATTAAATGTGTTTACAATTGTTTGTCAAAAGTCTTAGCATAT
AAAAGTGATGAGCTAGAGAAGCCACGTATTATTAAATTGGCCCCAACTGG
TATAGCAGCTATCAATATATCTGGCACCACAGTACACACAGGATTGAGTA
TTCCAGTtggaaaattcagaaatatgGCTGACAAACAAAGGACTGCAATT
GGAAATAAATTACATCATGTAAAGTTGATAATAATTGATGAAATGTCTAT
GATTTCGTCGCAACAGCTTTTGAACATCCATACAAGATTGTGTGAAATTT
TTGGTGTAAATGACAACACACCATTTGCAGGGAAAAGTATCATTGTTTGT
GGAGACCTCTTTCAATTACctccaattttttaaagttcagtattttcaac
tgagggGCCTATTATTGGTGCATGCAAATTATGGCACCTATTCAAACTAG
CTGAATTAGATGAGATTATGCGTCAAAAGGATGACTCTGACTTCATTGAT
CTCTTGAACAATGTAAGAGTAGGTGAATTGAATAGTAATGATGAAAGTAT
GATTAAATCTAGACTGATAACACGAGAACACCCTGATTATC Coding sequence (CDS) from alignment at sc0000410:18942..19732 >TCONS_00022283 ID=TCONS_00022283|Name=TCONS_00022283|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000410:18942..19732 (Clytia hemisphaerica)
ATGTATGTGCAAAGTTCCAAGTCAAATAATCCTATACTACTAGAaccatt
gagaatatttttaacaGGTGGTGCGGGCGTAGGAAAATCTCACTTAATTA
AATGTGTTTACAATTGTTTGTCAAAAGTCTTAGCATATAAAAGTGATGAG
CTAGAGAAGCCACGTATTATTAAATTGGCCCCAACTGGTATAGCAGCTAT
CAATATATCTGGCACCACAGTACACACAGGATTGAGTATTCCAGTtggaa
aattcagaaatatgGCTGACAAACAAAGGACTGCAATTGGAAATAAATTA
CATCATGTAAAGTTGATAATAATTGATGAAATGTCTATGATTTCGTCGCA
ACAGCTTTTGAACATCCATACAAGATTGTGTGAAATTTTTGGTGTAAATG
ACAACACACCATTTGCAGGGAAAAGTATCATTGTTTGTGGAGACCTCTTT
CAATTACctccaattttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022283-exon-sc0000410-1491911889:18942..19732 | TCONS_00022283-exon-sc0000410-1491911889:18942..19732 | Clytia hemisphaerica | exon |
| TCONS_00022283-exon-sc0000410-1510915933:18942..19732 | TCONS_00022283-exon-sc0000410-1510915933:18942..19732 | Clytia hemisphaerica | exon |
| TCONS_00022283-exon-sc0000410-1575043694:18942..19732 | TCONS_00022283-exon-sc0000410-1575043694:18942..19732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:18942..19732 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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