TCONS_00022278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022278
Unique NameTCONS_00022278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022278 ID=TCONS_00022278|Name=TCONS_00022278|organism=Clytia hemisphaerica|type=transcript|length=784bp
CGAAAAACAGTTTTGAAAAATCgcttaattttctttatttcagaaACGAA
CAAAATgccaataaataaataattgcAGAAAATGTCTCTGtcgaaaagtt
tgaatttaTCGTTTTAGATGAAAGTGATATCTTTCAAGATTCTTTCATGA
ATTAATGTCTATTTCTGTATTGTTCTCAAACTAGATAACGTAGCCTCACC
CACTGGGGATTGATTGGTCAAGCAATACACTCTAAAAAGAATATCAGCTC
AACAGTTTCTGTCGAAGATGCTCATTACGTCTAGCACCATCTTATAACAA
tcttttgaaatgattttccAAGTTGCTTAAGGTCCATCGAGACCTTACGT
AAACACGTTCACGTTCACGCTCACGAAGGACACCCGTCACATTGACACGA
AACTGCTTCACGGTAAgcaatcactttcgttttcttgctCAACATGGGGC
ATTTCATAACGGTCATTTTGCGAATCGTTTTCTTTGGTTTACAGAATTTG
CAATCGATAGCCAACGCGTCTTTATCGTTAGTATACATTGAGGAGGAGGT
GCAATAACCATGGCAACCTTTAGTGATTACCGTTACTACACCACAGCCAG
GCTCGTAGATTTTCATCCGCATTTTCTTCACAGCGCACGGCGTCGACGCA
GAACCATCAACGGAGCGTCGCACCAACGAAGCGGAATGACAAAAGGAGAT
GAAAGTTACTAAACATACCAGTTGCAAAATCGAATTCATTTTAGTCATCG
TGTTGTGTAGTTGTTTTCCTTGttttaaaaactg
Run BLAST on NCBI

transcript from alignment at sc0000410:228634..229492-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022278 ID=TCONS_00022278|Name=TCONS_00022278|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at sc0000410:228634..229492- (Clytia hemisphaerica)
CGAAAAACAGTTTTGAAAAATCGCTTAATTTTCTTTATTTCAGAAACGAA
CAAAATGCCAATAAATAAATAATTGCAGAAAATGTCTCTGTCGAAAAGTT
TGAATTTATCGTTTTAGATGAAAGTGATATCTTTCAAGATTCTTTCATGA
ATTAATGTCTATTTCTGTATTGTTCTCAAACTAGATAACGTAGCCTCACC
CACTGGGGATTGATTGGTCAAGCAATACACTCTAAAAAGAATATCAGCTC
AACAGTTTCTGTCGAAGATGCTCATTACGTCTAGCACCATCTTATAACAA
TCTTTTGAAATGATTTTCCAAGTTGCTTAAGGTCCATCCATCGAGACCTT
ACGTAAACACGTTTNCTTATAACAATCTTTTGAAATGATTTTCCAGGTTG
CTTAAGGTCCATCGAGACCTTACGTAAACACGTTCACGTTCACGCTCACG
AAGGACACCCGTCACATTGACACGAAACTGCTTCACGGTAAGCAATCACT
TTCGTTTTCTTGCTCAACATGGGGCATTTCATAACGGTCATTTTGCGAAT
CGTTTTCTTTGGTTTACAGAATTTGCAATCGATAGCCAACGCGTCTTTAT
CGTTAGTATACATTGAGGAGGAGGTGCAATAACCATGGCAACCTTTAGTG
ATTACCGTTACTACACCACAGCCAGGCTCGTAGATTTTCATCCGCATTTT
CTTCACAGCGCACGGCGTCGACGCAGAACCATCAACGGAGCGTCGCACCA
ACGAAGCGGAATGACAAAAGGAGATGAAAGTTACTAAACATACCAGTTGC
AAAATCGAATTCATTTTAGTCATCGTGTTGTGTAGTTGTTTTCCTTGTTT
TAAAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012494XLOC_012494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022278-exon-sc0000410-1575043694:229162..229492TCONS_00022278-exon-sc0000410-1575043694:229162..229492Clytia hemisphaericaexon
TCONS_00022278-exon-sc0000410-1575043694:228634..229086TCONS_00022278-exon-sc0000410-1575043694:228634..229086Clytia hemisphaericaexon
TCONS_00022278-exon-sc0000410-1510915933:229162..229492TCONS_00022278-exon-sc0000410-1510915933:229162..229492Clytia hemisphaericaexon
TCONS_00022278-exon-sc0000410-1510915933:228634..229086TCONS_00022278-exon-sc0000410-1510915933:228634..229086Clytia hemisphaericaexon
TCONS_00022278-exon-sc0000410-1491911889:229162..229492TCONS_00022278-exon-sc0000410-1491911889:229162..229492Clytia hemisphaericaexon
TCONS_00022278-exon-sc0000410-1491911889:228634..229086TCONS_00022278-exon-sc0000410-1491911889:228634..229086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:228634..229492 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.61997	6.81661	2.23507	1.03136	0.60422	1.76124	1.40582	1.28952	1.88374	1.57483	3.94553	1.35195	5.21619	5.64155	1.54071	2.31468	5.53654	6.14742	1.06446	2.94384	4.15519	4.08237	9.98267	13.4737	8.65484	9.71548	2.86556	3.04069	2.31134	2.66228
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006207Cys_knot_C
IPR004133DAN
IPR029034Cystine-knot_cytokine
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top