TCONS_00022253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022253
Unique NameTCONS_00022253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022253 ID=TCONS_00022253|Name=TCONS_00022253|organism=Clytia hemisphaerica|type=transcript|length=494bp
TGGTTTTTCCAAGCACTCAAATGCCTCCGTTAGACGGAGGCattaaactc
aattcaaatGGAGTTTGagaaactcaatttgaaagaaaattttcagaaaa
gaagTAAAAGATCAAATTTCACCATAGTAAAATACTTTCTCACTCTTTCT
TTCCCTTTTTTGAAGGTAAAGAACTTAGTTCTATAATGCTAAAAGtgcaa
aatacataaaaaatacattcaattcttcttctttatttttgtaacttttt
tctaattctagtagagtttttttatcatttggGCAGTTCTACACCATTTT
ATacagttttattaaaaatttgttaaaagagTTGAGAGGACTTTTCAGTA
ATTCATTCATTTTGTTCATCGCTAAATTCTAGAAATTCATTCACTTTTAA
CCGTTTTTAAAGTGCCAGTTAAGGCCAAATTATGCTCAGCTTTAGGGGGC
TTCGCCCCCTGAACCCCCACCAGGGCTAGCCCTGGACCCACTGG
Run BLAST on NCBI

transcript from alignment at sc0000408:94245..94738

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022253 ID=TCONS_00022253|Name=TCONS_00022253|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0000408:94245..94738 (Clytia hemisphaerica)
CCAGTGGGTCCAGGGCTAGCCCTGGTGGGGGTTCAGGGGGCGAAGCCCCC
TAAAGCTGAGCATAATTTGGCCTTAACTGGCACTTTAAAAACGGTTAAAA
GTGAATGAATTTCTAGAATTTAGCGATGAACAAAATGAATGAATTACTGA
AAAGTCCTCTCAActcttttaacaaatttttaataaaactgtATAAAATG
GTGTAGAACTGCccaaatgataaaaaaactctactagaattagaaaaaag
ttacaaaaataaagaagaagaattgaatgtattttttatgtattttgcaC
TTTTAGCATTATAGAACTAAGTTCTTTACCTTCAAAAAAGGGAAAGAAAG
AGTGAGAAAGTATTTTACTATGGTGAAATTTGATCTTTTActtcttttct
gaaaattttctttcaaattgagtttctCAAACTCCatttgaattgagttt
aatGCCTCCGTCTAACGGAGGCATTTGAGTGCTTGGAAAAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012473XLOC_012473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022253-exon-sc0000408-1491911889:94245..94738TCONS_00022253-exon-sc0000408-1491911889:94245..94738Clytia hemisphaericaexon
TCONS_00022253-exon-sc0000408-1510915933:94245..94738TCONS_00022253-exon-sc0000408-1510915933:94245..94738Clytia hemisphaericaexon
TCONS_00022253-exon-sc0000408-1575043694:94245..94738TCONS_00022253-exon-sc0000408-1575043694:94245..94738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:94245..94738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323367	0.301069	0	0.544735	0.335745	0.144231	0	0.449491	0.500034	0.25987	0.751436	0.502451	0.0870014	0.0859782	0.424114	0.0758566	0.749708	0.400222	0.529314	0.732917	1.10499	2.27314	0.57092	0.129762	0	0	0.682765	0.755453	0.488696	0.322236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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