TCONS_00022252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022252
Unique NameTCONS_00022252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022252 ID=TCONS_00022252|Name=TCONS_00022252|organism=Clytia hemisphaerica|type=transcript|length=510bp
ttcctgatttttcttttttgattttcagttctTCCTTCAACAAACGAGTT
TCATTTTCATATCTGACCATGTACTCTGTCCTGACTTGAAGGCATTTCAA
TAGATGTTCTTTTTCGAAATGCCAGCATATTTCTCGATCACTAGTACACA
TTGCTGTATTTTcagttttgattgtttccaCAATATATGCTCTTCTTAGG
CGTTCGTTTTCCTGCATCAGTAACTGGTAACTAGTTCTCAGTCTCTCAAA
CTCCTCTTTATAGTTCATTTCAATTCCATCGTCTAGCTCCGTCTCTATTG
ACCCGTCATTTGATCCTAGGACCTTAAAATCCCTCTCACTAGCCTCTTGC
TGTTGTTCTTTGCTGTCTTCGTCAAAATAATTAGCCGCCATTCCAACAAG
ATGGTTGTGTATCGTTTGGGCTAGTGTTCCACCTAGGGATGCATGGTCAC
TCATCGTTAGTCATACGTGGATTTATAATAATTTGTTCAAAATTCAAATC
TGGGGCATTT
Run BLAST on NCBI

protein sequence of TCONS_00022252-protein

>TCONS_00022252-protein ID=TCONS_00022252-protein|Name=TCONS_00022252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MSDHASLGGTLAQTIHNHLVGMAANYFDEDSKEQQQEASERDFKVLGSND
GSIETELDDGIEMNYKEEFERLRTSYQLLMQENERLRRAYIVETIKTENT
AMCTSDREICWHFEKEHLLKCLQVRTEYMVRYENETRLLKEELKIKKEKS
G
Run BLAST on NCBI

transcript from alignment at sc0000408:78352..78861

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022252 ID=TCONS_00022252|Name=TCONS_00022252|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000408:78352..78861 (Clytia hemisphaerica)
AAATGCCCCAGATTTGAATTTTGAACAAATTATTATAAATCCACGTATGA
CTAACGATGAGTGACCATGCATCCCTAGGTGGAACACTAGCCCAAACGAT
ACACAACCATCTTGTTGGAATGGCGGCTAATTATTTTGACGAAGACAGCA
AAGAACAACAGCAAGAGGCTAGTGAGAGGGATTTTAAGGTCCTAGGATCA
AATGACGGGTCAATAGAGACGGAGCTAGACGATGGAATTGAAATGAACTA
TAAAGAGGAGTTTGAGAGACTGAGAACTAGTTACCAGTTACTGATGCAGG
AAAACGAACGCCTAAGAAGAGCATATATTGtggaaacaatcaaaactgAA
AATACAGCAATGTGTACTAGTGATCGAGAAATATGCTGGCATTTCGAAAA
AGAACATCTATTGAAATGCCTTCAAGTCAGGACAGAGTACATGGTCAGAT
ATGAAAATGAAACTCGTTTGTTGAAGGAagaactgaaaatcaaaaaagaa
aaatcaggaa

Coding sequence (CDS) from alignment at sc0000408:78352..78861

>TCONS_00022252 ID=TCONS_00022252|Name=TCONS_00022252|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000408:78352..78861 (Clytia hemisphaerica)
ATGAGTGACCATGCATCCCTAGGTGGAACACTAGCCCAAACGATACACAA
CCATCTTGTTGGAATGGCGGCTAATTATTTTGACGAAGACAGCAAAGAAC
AACAGCAAGAGGCTAGTGAGAGGGATTTTAAGGTCCTAGGATCAAATGAC
GGGTCAATAGAGACGGAGCTAGACGATGGAATTGAAATGAACTATAAAGA
GGAGTTTGAGAGACTGAGAACTAGTTACCAGTTACTGATGCAGGAAAACG
AACGCCTAAGAAGAGCATATATTGtggaaacaatcaaaactgAAAATACA
GCAATGTGTACTAGTGATCGAGAAATATGCTGGCATTTCGAAAAAGAACA
TCTATTGAAATGCCTTCAAGTCAGGACAGAGTACATGGTCAGATATGAAA
ATGAAACTCGTTTGTTGAAGGAagaactgaaaatcaaaaaagaaaaatca
gga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012472XLOC_012472Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022252-proteinTCONS_00022252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022252-exon-sc0000408-1491911889:78352..78861TCONS_00022252-exon-sc0000408-1491911889:78352..78861Clytia hemisphaericaexon
TCONS_00022252-exon-sc0000408-1510915933:78352..78861TCONS_00022252-exon-sc0000408-1510915933:78352..78861Clytia hemisphaericaexon
TCONS_00022252-exon-sc0000408-1575043694:78352..78861TCONS_00022252-exon-sc0000408-1575043694:78352..78861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:78352..78861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235733	0	2.26872	2.21959	0	0	2.1215	0.993061	1.58918	3.81388	0.8359	0.863481	8.15247	5.45433	0.736212	1.14919	0.265445	0.634837	0.877061	2.09779	0.11396	0	0	0	0	1.46823	0	0	0.130822	0.266575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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