TCONS_00022250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022250
Unique NameTCONS_00022250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022250 ID=TCONS_00022250|Name=TCONS_00022250|organism=Clytia hemisphaerica|type=transcript|length=405bp
CTAactcgaaatttatttttcgttcacaagttttcgaaaatcgctAACTG
GAAGATTTCGGGcctcgtaaaatgctttctataattcgTAACTCTCTGTA
GTTCGAACAAATTAGATCCCCCGTTCgatttcgaattagcgagagttaac
TGTATGACAGTCCCCTCGTTGTGTCCCACGACACAATTTGATTAGCTCAC
CCTATAAATAAATACTTTTAGCGTCAAAATTCAATGAGATAATTCTTACG
ACTTTAAACCAAGAATTCagttatttatttaattttagagaaatttgTAC
AAATTTTTATTGTATAACAGTCGTGATgtgaattttattgtttttaaatt
tttgtttgttgttgaGAGATTGATAATTGTATGATTAAATAGCTTTATGA
AGAAG
Run BLAST on NCBI

transcript from alignment at sc0000408:52460..52864

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022250 ID=TCONS_00022250|Name=TCONS_00022250|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0000408:52460..52864 (Clytia hemisphaerica)
CTTCTTCATAAAGCTATTTAATCATACAATTATCAATCTCtcaacaacaa
acaaaaatttaaaaacaataaaattcacATCACGACTGTTATACAATAAA
AATTTGTAcaaatttctctaaaattaaataaataactGAATTCTTGGTTT
AAAGTCGTAAGAATTATCTCATTGAATTTTGACGCTAAAAGTATTTATTT
ATAGGGTGAGCTAATCAAATTGTGTCGTGGGACACAACGAGGGGACTGTC
ATACAgttaactctcgctaattcgaaatcGAACGGGGGATCTAATTTGTT
CGAACTACAGAGAGTTAcgaattatagaaagcattttacgaggCCCGAAA
TCTTCCAGTTagcgattttcgaaaacttgtgaacgaaaaataaatttcga
gtTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012470XLOC_012470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022250-exon-sc0000408-1491911889:52460..52864TCONS_00022250-exon-sc0000408-1491911889:52460..52864Clytia hemisphaericaexon
TCONS_00022250-exon-sc0000408-1510915933:52460..52864TCONS_00022250-exon-sc0000408-1510915933:52460..52864Clytia hemisphaericaexon
TCONS_00022250-exon-sc0000408-1575043694:52460..52864TCONS_00022250-exon-sc0000408-1575043694:52460..52864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:52460..52864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181009	0	0	0	5.85841	2.12181	6.51603	9.36821	0.915196	0.944682	0.183386	2.16992	1.56498	1.62525	0.71948	0.772112	0.815296	0.696377	1.34692	2.0135	1.40008	2.30482	0.830165	0.943426	1.36039	4.33612	1.73739	1.85419	0.602717	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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