TCONS_00022249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022249
Unique NameTCONS_00022249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022249 ID=TCONS_00022249|Name=TCONS_00022249|organism=Clytia hemisphaerica|type=transcript|length=448bp
CGCAAATATACCTCGCTAGAGAAATTTAATCATGGTAGACTTATTATTGG
GAAATCGTTTTAAATTCTGTTTTTATAATTTCTCAATAGCAAGTCCTACT
ACCTACCAGACAAAATCAACAAATCTGTTTCAGTTTCACGATTGCAACTC
AATGTTGTAACCAATTAACGAAATTGTCATCGAGTCATCAAATTTTCTTG
TTCTATTGATAAAGTGTTGATGTGATGATTGATCGATGGCCTCCTTATCA
TACAAAAAATGTCTCGTGACATGTGGATCTGTTTTAAGAGATTTGTTTTA
AGATTATAATGAGCTCTATTTTTTGTATAAAACTattagatttttctttt
tcttaatcatAAGGTTTAATATAACCTTTTCCAAAAGATTTAGGAATAAT
AAAATTACATGTTCCACCTTTCCATATTGAAAATCGACCTGACAATTT
Run BLAST on NCBI

transcript from alignment at sc0000408:43466..43913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022249 ID=TCONS_00022249|Name=TCONS_00022249|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0000408:43466..43913 (Clytia hemisphaerica)
AAATTGTCAGGTCGATTTTCAATATGGAAAGGTGGAACATGTAATTTTAT
TATTCCTAAATCTTTTGGAAAAGGTTATATTAAACCTTatgattaagaaa
aagaaaaatctaatAGTTTTATACAAAAAATAGAGCTCATTATAATCTTA
AAACAAATCTCTTAAAACAGATCCACATGTCACGAGACATTTTTTGTATG
ATAAGGAGGCCATCGATCAATCATCACATCAACACTTTATCAATAGAACA
AGAAAATTTGATGACTCGATGACAATTTCGTTAATTGGTTACAACATTGA
GTTGCAATCGTGAAACTGAAACAGATTTGTTGATTTTGTCTGGTAGGTAG
TAGGACTTGCTATTGAGAAATTATAAAAACAGAATTTAAAACGATTTCCC
AATAATAAGTCTACCATGATTAAATTTCTCTAGCGAGGTATATTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012469XLOC_012469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022249-exon-sc0000408-1491911889:43466..43913TCONS_00022249-exon-sc0000408-1491911889:43466..43913Clytia hemisphaericaexon
TCONS_00022249-exon-sc0000408-1510915933:43466..43913TCONS_00022249-exon-sc0000408-1510915933:43466..43913Clytia hemisphaericaexon
TCONS_00022249-exon-sc0000408-1575043694:43466..43913TCONS_00022249-exon-sc0000408-1575043694:43466..43913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:43466..43913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.445327	0	0.504222	1.64434	0.200183	0	0.190846	0.178668	0	0.154944	0	0	0.0987244	0.102526	0	0	0	0	0	0	0	0.420032	0.170201	0	0	0	0	0	0.16476	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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