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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022245 ID=TCONS_00022245|Name=TCONS_00022245|organism=Clytia hemisphaerica|type=transcript|length=3726bpRun BLAST on NCBI protein sequence of TCONS_00022245-protein >TCONS_00022245-protein ID=TCONS_00022245-protein|Name=TCONS_00022245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp MWKIREIQDKVTNVVMNYTEVESKVREATNDDQWGPHGSVMGELAKYTYTRun BLAST on NCBI transcript from alignment at sc0000408:253283..271779- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022245 ID=TCONS_00022245|Name=TCONS_00022245|organism=Clytia hemisphaerica|type=transcript|length=18497bp|location=Sequence derived from alignment at sc0000408:253283..271779- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000408:253283..271779- >TCONS_00022245 ID=TCONS_00022245|Name=TCONS_00022245|organism=Clytia hemisphaerica|type=CDS|length=17064bp|location=Sequence derived from alignment at sc0000408:253283..271779- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022245 vs. Swiss-Prot (Human)
Match: EPN4 (Clathrin interactor 1 OS=Homo sapiens GN=CLINT1 PE=1 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 3.617e-74 Identity = 215/566 (37.99%), Postives = 294/566 (51.94%), Query Frame = 2
Query: 626 LCNMWKIREIQDKVTNVVMNYTEVESKVREATNDDQWGPHGSVMGELAKYTYTYENFPEVMGMLWKRMLLE-KKNWRRXXXXXXXXXXXXXNGSERVVQSARDHLYDMRQLENYQHIDELGKDQGLNIRHKVKEILEMVQDDSRLRDERKRAKKNKDKYVGMSNDLIEDSFYSDRYNKDARSPRTRGSDDFQQPSKLQQIKETLDTIRPGGKRDYSNYNIQGASGNAYKDEPENGVEAGEDSDNDDYKYKS-TPRNEFKXXXXXXXXFQPRKNTPSAASPASRK---TPSKKVDLXXXXXXXXXXXXXXXXXXXXDKS--DTGFADFSSFSSGTNEPP--KGSNDLADLMGGP--PSGGNTDLFGDFXXXXXXXXXXXXXXXTGTDFANFESFGSLNQASAPSSASNDLLGMSATPNLMSQPMQPSGNLMMGQTSQQNNMFMQPTNQMMAPMQSTNQMMAPMQSTNQMMAPMQSTNQMTRPMQSANQMMAPMQSANQM---QPMSTMGMQPRSQGMMTPQKPMNQTQGTPQSQNTLWANTGVDISLDSLSPGASRQKPALPSMNQM 2281
+ NMWK+RE+ DK TNVVMNY+E+ESKVREATNDD WGP G +MGE+AK T+ YE FPE+M MLW RML + KKNWRRVYKSLL+L+YL++NGSERVV SAR+H+YD+R LENY +DE GKDQG+NIR KVKE++E QDD RLR+ERK+AKKNKDKYVG+S+D + YS+RY+ + P+++ +++ + + L G D I + + E+ E DSD + + +P+ EFKD++ + + K PSK +DL + GDK+ D + + SS P K S DL DL G +GG+ DLFG F DF + + GS +S + D SA S P+ SG G SQ + + + P P S + + + ++Q T M S+ M M S N + PMS RSQ QK +++T P + W++ V+ISLD+L PG KP PS+N M
Sbjct: 1 MLNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSSDSVGGFRYSERYDPE---PKSKWDEEWDKNKSAFPFSDKL-----GELSDKIGSTIDDTISKFRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATETTTTRHKRTANPSKTIDL------------GAAAHYTGDKASPDQNASTHTPQSSVKTSVPSSKSSGDLVDLFDGTSQSTGGSADLFGGF-----------------ADFGSAAASGSFPSQVTATSGNGDFGDWSAFNQAPSGPVASSGEF-FGSASQPAVELVSGSQSALGP--------PPAASNSSDLFDLMGSSQAT--MTSSQSMNFSMMSTNTVGLGLPMS------RSQNTDMVQKSVSKT--LPST----WSDPSVNISLDNLLPGMQPSKPQQPSLNTM 506 The following BLAST results are available for this feature:
BLAST of TCONS_00022245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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