TCONS_00022235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022235
Unique NameTCONS_00022235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022235 ID=TCONS_00022235|Name=TCONS_00022235|organism=Clytia hemisphaerica|type=transcript|length=1575bp
taagaATTAACCATAAGTAAattaaacatttcaaattaccGTCGCATTGC
ATGATGGTACTAGAAGATGATGAAAAGACGCTGTTGAAACATGATGCATT
GCAAACCCAGGATGCATTGCAGGCAAGAGAAGCTGTATTAGATGTGAAGG
AGAAGTCCGCTCTCTTTTCTTCCATCGAACAATCAACGGAAAGCAATGGA
AATTGTTGTCAAAATAAAATGTTGCTTCTCAAAACGATAGTATCTGGACA
AATCCTATCTTTAATGTTGAGTGGTACGGGAACGGCCGCTACCGCATTAA
GTGTTAAATACAAAGCGGAAACACCCTCATTGAATGCTTTCTTCATGTAT
GTCATTCTCGCTTCGACTTTTGGTGTTTATGCTGCAACgagaaaagaatt
taaaacaatCGTTCGTAAACATTGGTGGAAATACCTGATTGTAGCTATCC
TTGATGTGGAAGCGAACTATTTGTTGACCAAGGCGTACACTTATACAACG
CTAACAAGTGTGCAGCTATGTGACAGTTTCACCATTCCAACAACAATGGT
TATCTCCTTTATATTTCTACGGATAAGATACAAAGTGATCCATTACATTG
GAGTGATTCTGTGTATTGGAGGCGCcgtttgtttgatttttaccgacgGA
AATGACAAATCAAATAATGCGCGTAACGAAATTTTAGGAGACGTAATTGC
ATTAACAGCAGCTGTTTTATATGGTATTTCGAATGTGGGTCAAGAATATT
TAGTGAAAAAGTATTCTGCTCAAATGTATCTCGGTATTGTTGGTATCGTA
GGGTTTGTCATTACTGGCTTGCAAACagCAATCATAGAACGGAACGATAT
AGCGTCCATTGATTTCAAATGGCAAGTTGgcaTGTTATATTTTGCATTTG
CAATTTGTCAGTATTTCTACTACACGATGATGCCTGTTGTGATGAAATTG
AGCAGCGCCACAGTGATGAATCTATCCTTACTCACCTCTGACCTGTACAC
GCTTCTCATTGGTCTACTCATCTTTGATTATCAGttTTCAAATATGTATT
TTGTGGCATTTGCTGGTATCCTCACTGGACTCATAACATATAATGTCCGC
CCACCACCTGCCGCCCCGCCCAAACGAAAGAAAAACACCTCAATGAGAAT
TGAAAACGGAGTCGATAAACCGAAAAATTGGACCGAGTCCTCCTTCAAAG
CTCAGAATGGTAATACGttgtttttctacaaaaatgaaaatggaatcaAT
AATCATAACCACATCGGTAACGGTAATTTAAATAGTACCTCCTCATTGGT
TAATAATAGGACTGGACCGAATAGAGATTACTCAGGCTTATGAGGTGCTG
TATATTGTTTGATGAAGAGACTttgataaaacattttttgatgatttatA
TATGACTAGATAGatagtttttaacaaatttatCCGACCCTTTATATTat
atcttatttaaaaaagtatattttattgATTATCATTTTTTCGATACCAA
CTGTATATGATGTTAATTTATACACCTTTATAGTTAGACCTCTCCATGCC
ACCACCTTTAGGATAAACATTAGGC
Run BLAST on NCBI

protein sequence of TCONS_00022235-protein

>TCONS_00022235-protein ID=TCONS_00022235-protein|Name=TCONS_00022235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MMVLEDDEKTLLKHDALQTQDALQAREAVLDVKEKSALFSSIEQSTESNG
NCCQNKMLLLKTIVSGQILSLMLSGTGTAATALSVKYKAETPSLNAFFMY
VILASTFGVYAATRKEFKTIVRKHWWKYLIVAILDVEANYLLTKAYTYTT
LTSVQLCDSFTIPTTMVISFIFLRIRYKVIHYIGVILCIGGAVCLIFTDG
NDKSNNARNEILGDVIALTAAVLYGISNVGQEYLVKKYSAQMYLGIVGIV
GFVITGLQTAIIERNDIASIDFKWQVGMLYFAFAICQYFYYTMMPVVMKL
SSATVMNLSLLTSDLYTLLIGLLIFDYQFSNMYFVAFAGILTGLITYNVR
PPPAAPPKRKKNTSMRIENGVDKPKNWTESSFKAQNGNTLFFYKNENGIN
NHNHIGNGNLNSTSSLVNNRTGPNRDYSGL
Run BLAST on NCBI

transcript from alignment at sc0000408:189987..194901-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022235 ID=TCONS_00022235|Name=TCONS_00022235|organism=Clytia hemisphaerica|type=transcript|length=4915bp|location=Sequence derived from alignment at sc0000408:189987..194901- (Clytia hemisphaerica)
TAAGAATTAACCATAAGTAAATTAAACATTTCAAATTACCGTCGCATTGC
ATGATGGTACTAGAAGATGATGAAAAGACGCTGTTGAAACATGATGCATT
GCAAACCCAGGATGCATTGCAGGCAAGAGAAGCTGTATTAGATGTGAAGG
AGAAGTCCGCTCTCTTTTCTTCCATCGAACAATCAACGGAAAGCAATGGA
AATTGTTGTCAAAATAAAATGTGAGAGATTTATTTATCATTACCATTTGA
AATAACCAAGCTGATGATTCAAGTTAACTTATCGGCCAAAACTTAGTCGG
CCCTAAGTGACTACATTTTGACGAGCCGACTGAAATTAAGGCTGACTAAG
TTTTGGCCGATAAGGTATAGCAGCGCTGAAGCGGGTTTTTTTCGTCAACA
GGCGAAGACCTACGCTAGCTGCCGAATATCTGCAGATTTAATGCGTGATC
ATATTTCCAGTGGTCAAAGATCTTAACAGACCACCAAAAACCTGCAAAAC
TTACACATTTAAGAATCTAAATGCGAACAATTACCTTAGGTTTTTAAAAA
TCAAGTCAATTAAACTGTTTTTGTTATCAAACTATTGAAGGCCTTGTTTG
GTCTTCGTCTGTTGGTGGAAAAAAATCCGCAGCGCCGAGCTCACGCCACT
GTTTCGTGACAGTGGTAAAAAACGAAGAACTTTGAGTTTTGTGCCGAAAC
GAAGACAAAATTTTCCCGCTGTTTTCATTGAAATGAGACGCTTCTTTCAC
AGTCACCATTAGACTCGTGCTAGCATGCTATACAATGAAATAAAATCCCT
CTTATTATTTTATTTAAACTTAAATTTTACCCTTTTTACCATTGCTGCAC
TTGCAAACTTTGACCAATGCAACACTCACACTGAATTTAATTTGTCCTTT
TCAGGTTGCTTCTCAAAACGATAGTATCTGGACAAATCCTATCTTTAATG
TTGAGTGGTACGGGAACGGCCGCTACCGCATTAAGTGTTAAATACAAAGC
GGAAACACCCTCATTGAATGCTTTCTTCATGTATGTCATTCTCGCTTCGA
CTTTTGGTGTTTATGCTGCAACGAGAAAAGAATTTAAAACAATCGTTCGT
AAACATTGGTGGAAATACCTGATTGTAGCTATCCTTGATGTGGAAGCGAA
CTATTTGTTGACCAAGGCGTACACTTATACAACGCTAACAAGTGTGCAGG
TAAGGAGACTAATTGCATACAAATCCACGTACCACCTCTTTATTTCACTG
GCAGACACAATCGCAGTACAATCGCTATCAAAAATTCTGAAAAAGCGAAC
TTAGAGGTTGGGTATGAGCTTGGATTAATTGTTTCATCAAACTAAAGATA
CGATTTTCCTATGTATGGTATCTTAGTTTTACTGAGACGTTTTTTTTTTT
ACTGATAATGAGTTATTGTACTGGGTAATGGTTATCTGTTGATGCCAGGT
ACAAATTCTAGACCGCCATCCTATTGGTAATCTCTTTACTATCTGAGAGT
CTGAAATATCTTTTGTGAATATTATTTTTCCCAATATCATACTTAACTCT
TATCTCTCCAATAGCTATGTGACAGTTTCACCATTCCAACAACAATGGTT
ATCTCCTTTATATTTCTACGGATAAGATACAAAGTGATCCATTACATTGG
AGTGATTCTGTGTATTGGAGGCGCCGTTTGTTTGATTTTTACCGACGGAA
ATGACAAATCAAATAATGGTAAGAATATAATTTTGATAATTGAAATCTTA
ATCTATATTTCAATTAAATTCCCCGATTAGCTCGGCTAACACCTATCTCA
CGCATGGTAATATCTACCAAAGTTTCACGTTTGCTTTTCCTGAGACGTGC
GGGGCATTAATAGTTCTCATAAAAAGGGTGTTTTAAGAGATTAAAGCAGT
AGAATGTAGCCAGCGCATTCCCACAAATCAAATTTTTAAACGCAGTAAAA
AANTTTTAAGAGATTAAAGCAGTAGAATGTAGCCAGCGCATTCCCACAAA
TCAATTTTTTAAACGCAGTAAAAAAAGCGTTTCTTGTCTAACAGGCTAGG
TAGAATGTGGTTGAAAGTGATTTTTTCCCAATCCCGAAGAATCTTTTCTG
CCGAACTAGTGGTGGGAACTGTTAGATTACCAATTTAGAAAAAAAACAAA
ACTTTTATTCTATTTCAGCGCGTAACGAAATTTTAGGAGACGTAATTGCA
TTAACAGCAGCTGTTTTATATGGTATTTCGAATGTGGGTCAAGAATATTT
AGTGAAAAAGTATTCTGCTCAAATGTATCTCGGTATTGTTGGTATCGTAG
GGTTTGTCATTACTGGCTTGCAAACGTAAGCATATTTTACAAACTGGAGC
CCAGTTCCTTATGACGAGTTTGGTGTAAATTCGATTATAATCAATAGAAC
ATGGTATGGAAGCTGATATTGATCACATGATCAAAATCCACAAAATAAAA
TTCAACCAAAGTGTCCAAGTGATATTAATCCAATATATAAGAATCCGTCT
GTCATAAATTTTGAGGATCTGGTTTGATTGGGACGGGCTAAAATATTAGG
TGCTTTGGGTCAATAAATTTACATAAAAAAACAACAACTTATTATAACCT
TTTCAATAGTTTTTAATTAATATCTTTTGATATTTTAGAGCAATCATAGA
ACGGAACGATATAGCGTCCATTGATTTCAAATGGCAAGTTGGTAAGTGAC
ATCACAAAGTCATCGATTTGTGCTTAAATCCTTAAAAACGAAGCCGGTTA
ATTTTGTTTAATCTAAGCTTTTGAAAACGACAATAACTGAAGGCAAAAAT
TATAAACCATCCCTCCAATAAAAATGCGAAATTACGAAAGAAACAATTTC
CTCTAAGAACTAAAGCCAACTCGGTGTCACGGATGAGAAAAGTCACGCTG
TTATCTAGATTCCCTAAGCTACCCCTGTCTCACAGCCCTGGTGAATAACT
TCTTCCCTCATTAGGATGAAAATGTCTATCAGGATCCCAATGGGGATTGT
TCTTAGGTCAAATTATCCAGTGGGGATGGTTTTTGAGTGTATATTTTTCG
TTAAATTTTAAATTGGGATGAAAAGAAATACAATATTCCAGTAGGACTGA
AATTGGAGGGTATTTTTCCCACCGGGACAAAATTTTGACTAATTCTGTTC
TATGCTTTAATGGGATAAATTTTCGCGGGGATTAATTTTCGCGGATTTCG
CGGATTTGGGTGTCATCCGCGAAAATAAGTCCCATTGGAAATTTGAAAAA
GGCCCATCCGCGAAAATTAGTTTCCGCGAAAAATTTGAATTTTTGTTGCA
ATCCGCGAAATTTCTATTTTTATCGTTTTTTATTTTTTTCAACTTTTGAT
AGTTGTAATACATATCTCCTCGCCCTGTTCCAAAACACCCTCTTATTACT
TGAAAAAAAATTCTTAATTTTCCTGGAAAAATTTTATTTCAATGTTTTGA
CCCTTTTCAAAAAATTTAATTTGTACCCCAATCCGCGAAATAAAATCCCG
CGAAAAATCAGGAAATCCCTCATCCGCGAAAATTAATCCCCGCGAAATCT
TAAAATTTCGCGGATGAGCTCAACCGCGAAATTTAATCCCCGCGAAAATT
AATCCCCGCGAAATCTTAAAATTTCGCGGATGAGCTCAACCGCGAAATTT
AATCCCCGCGAAAATTTATCCCATTAAAGTAGACAAATGAGAATTTTCAT
AATCCCAGCTCATCAGTCCAGTCTAACTATATATTTTGAATTTTAGGCAT
GTTATATTTTGCATTTGCAATTTGTCAGTATTTCTACTACACGATGATGC
CTGTTGTGATGAAATTGAGCAGCGCCACAGTGATGAATCTATCCTTACTC
ACCTCTGACCTGTACACGCTTCTCATTGGTCTACTCATCTTTGATTATCA
GGTATGTAATAACGCCATCTTTTTTAATCAGTAAGTAAGACGTGCTTCTC
CACATGGTGACGATAATATTGTGTGTTTTCTGAGTATAGCTTTTGGCATT
GTGACGCTTAAACTGACTTTTCTAAATTTTTAAAAAGTACACCAAAACAA
GGGTATTAAATTAAGCATTTTAGTATTTTTGATGGGATTTTTTTTTATAA
TTCTTTAAATAACTGATGATGTTAGAAGTTATTTTATGAAGGGAAGTATC
TTGTTCAAAATAGAAATATCAATATAATTGACTAAATTCAAAAAGCTGTA
CCTCAAAGTTTAAGTTAGACTATCCTCCTTCTAATAAAAGCATTGAGATC
AATTAAATATTACATTTGACCTGGTTTGATTATTAAACGTCCAAAGTATT
TTTGCGAGTCACCCAGCAGTGAGTTGTGACTCTGTAGTAAATGATTCTTA
CTTACACTTTTTTATTTTCTTTAGTTTTCAAATATGTATTTTGTGGCATT
TGCTGGTATCCTCACTGGACTCATAACATATAATGTCCGCCCACCACCTG
CCGCCCCGCCCAAACGAAAGAAAAACACCTCAATGAGAATTGAAAACGGA
GTCGATAAACCGAAAAATTGGACCGAGTCCTCCTTCAAAGCTCAGAATGG
TAATACGTTGTTTTTCTACAAAAATGAAAATGGAATCAATAATCATAACC
ACATCGGTAACGGTAATTTAAATAGTACCTCCTCATTGGTTAATAATAGG
ACTGGACCGAATAGAGATTACTCAGGCTTATGAGGTGCTGTATATTGTTT
GATGAAGAGACTTTGATAAAACATTTTTTGATGATTTATATATGACTAGA
TAGATAGTTTTTAACAAATTTATCCGACCCTTTATATTATATCTTATTTA
AAAAAGTATATTTTATTGATTATCATTTTTTCGATACCAACTGTATATGA
TGTTAATTTATACACCTTTATAGTTAGACCTCTCCATGCCACCACCTTTA
GGATAAACATTAGGC

Coding sequence (CDS) from alignment at sc0000408:189987..194901-

>TCONS_00022235 ID=TCONS_00022235|Name=TCONS_00022235|organism=Clytia hemisphaerica|type=CDS|length=9051bp|location=Sequence derived from alignment at sc0000408:189987..194901- (Clytia hemisphaerica)
TTTTCAAATATGTATTTTGTGGCATTTGCTGGTATCCTCACTGGACTCAT
AACATATAATGTCCGCCCACCACCTGCCGCCCCGCCCAAACGAAAGAAAA
ACACCTCAATGAGAATTGAAAACGGAGTCGATAAACCGAAAAATTGGACC
GAGTCCTCCTTCAAAGCTCAGAATGGTAATACGTTGTTTTTCTACAAAAA
TGAAAATGGAATCAATAATCATAACCACATCGGTAACGGTAATTTAAATA
GTACCTCCTCATTGGTTAATAATAGGACTGGACCGAATAGAGATTACTCA
GGCTTATGAGCATGTTATATTTTGCATTTGCAATTTGTCAGTATTTCTAC
TACACGATGATGCCTGTTGTGATGAAATTGAGCAGCGCCACAGTGATGAA
TCTATCCTTACTCACCTCTGACCTGTACACGCTTCTCATTGGTCTACTCA
TCTTTGATTATCAGAGCAATCATAGAACGGAACGATATAGCGTCCATTGA
TTTCAAATGGCAAGTTGCGCGTAACGAAATTTTAGGAGACGTAATTGCAT
TAACAGCAGCTGTTTTATATGGTATTTCGAATGTGGGTCAAGAATATTTA
GTGAAAAAGTATTCTGCTCAAATGTATCTCGGTATTGTTGGTATCGTAGG
GTTTGTCATTACTGGCTTGCAAACCTATGTGACAGTTTCACCATTCCAAC
AACAATGGTTATCTCCTTTATATTTCTACGGATAAGATACAAAGTGATCC
ATTACATTGGAGTGATTCTGTGTATTGGAGGCGCCGTTTGTTTGATTTTT
ACCGACGGAAATGACAAATCAAATAATGGTTGCTTCTCAAAACGATAGTA
TCTGGACAAATCCTATCTTTAATGTTGAGTGGTACGGGAACGGCCGCTAC
CGCATTAAGTGTTAAATACAAAGCGGAAACACCCTCATTGAATGCTTTCT
TCATGTATGTCATTCTCGCTTCGACTTTTGGTGTTTATGCTGCAACGAGA
AAAGAATTTAAAACAATCGTTCGTAAACATTGGTGGAAATACCTGATTGT
AGCTATCCTTGATGTGGAAGCGAACTATTTGTTGACCAAGGCGTACACTT
ATACAACGCTAACAAGTGTGCAGATGATGGTACTAGAAGATGATGAAAAG
ACGCTGTTGAAACATGATGCATTGCAAACCCAGGATGCATTGCAGGCAAG
AGAAGCTGTATTAGATGTGAAGGAGAAGTCCGCTCTCTTTTCTTCCATCG
AACAATCAACGGAAAGCAATGGAAATTGTTGTCAAAATAAAATTTTTCAA
ATATGTATTTTGTGGCATTTGCTGGTATCCTCACTGGACTCATAACATAT
AATGTCCGCCCACCACCTGCCGCCCCGCCCAAACGAAAGAAAAACACCTC
AATGAGAATTGAAAACGGAGTCGATAAACCGAAAAATTGGACCGAGTCCT
CCTTCAAAGCTCAGAATGGTAATACGTTGTTTTTCTACAAAAATGAAAAT
GGAATCAATAATCATAACCACATCGGTAACGGTAATTTAAATAGTACCTC
CTCATTGGTTAATAATAGGACTGGACCGAATAGAGATTACTCAGGCTTAT
GAGCATGTTATATTTTGCATTTGCAATTTGTCAGTATTTCTACTACACGA
TGATGCCTGTTGTGATGAAATTGAGCAGCGCCACAGTGATGAATCTATCC
TTACTCACCTCTGACCTGTACACGCTTCTCATTGGTCTACTCATCTTTGA
TTATCAGAGCAATCATAGAACGGAACGATATAGCGTCCATTGATTTCAAA
TGGCAAGTTGCGCGTAACGAAATTTTAGGAGACGTAATTGCATTAACAGC
AGCTGTTTTATATGGTATTTCGAATGTGGGTCAAGAATATTTAGTGAAAA
AGTATTCTGCTCAAATGTATCTCGGTATTGTTGGTATCGTAGGGTTTGTC
ATTACTGGCTTGCAAACCTATGTGACAGTTTCACCATTCCAACAACAATG
GTTATCTCCTTTATATTTCTACGGATAAGATACAAAGTGATCCATTACAT
TGGAGTGATTCTGTGTATTGGAGGCGCCGTTTGTTTGATTTTTACCGACG
GAAATGACAAATCAAATAATGGTTGCTTCTCAAAACGATAGTATCTGGAC
AAATCCTATCTTTAATGTTGAGTGGTACGGGAACGGCCGCTACCGCATTA
AGTGTTAAATACAAAGCGGAAACACCCTCATTGAATGCTTTCTTCATGTA
TGTCATTCTCGCTTCGACTTTTGGTGTTTATGCTGCAACGAGAAAAGAAT
TTAAAACAATCGTTCGTAAACATTGGTGGAAATACCTGATTGTAGCTATC
CTTGATGTGGAAGCGAACTATTTGTTGACCAAGGCGTACACTTATACAAC
GCTAACAAGTGTGCAGATGATGGTACTAGAAGATGATGAAAAGACGCTGT
TGAAACATGATGCATTGCAAACCCAGGATGCATTGCAGGCAAGAGAAGCT
GTATTAGATGTGAAGGAGAAGTCCGCTCTCTTTTCTTCCATCGAACAATC
AACGGAAAGCAATGGAAATTGTTGTCAAAATAAAATTTTTCAAATATGTA
TTTTGTGGCATTTGCTGGTATCCTCACTGGACTCATAACATATAATGTCC
GCCCACCACCTGCCGCCCCGCCCAAACGAAAGAAAAACACCTCAATGAGA
ATTGAAAACGGAGTCGATAAACCGAAAAATTGGACCGAGTCCTCCTTCAA
AGCTCAGAATGGTAATACGTTGTTTTTCTACAAAAATGAAAATGGAATCA
ATAATCATAACCACATCGGTAACGGTAATTTAAATAGTACCTCCTCATTG
GTTAATAATAGGACTGGACCGAATAGAGATTACTCAGGCTTATGAGCATG
TTATATTTTGCATTTGCAATTTGTCAGTATTTCTACTACACGATGATGCC
TGTTGTGATGAAATTGAGCAGCGCCACAGTGATGAATCTATCCTTACTCA
CCTCTGACCTGTACACGCTTCTCATTGGTCTACTCATCTTTGATTATCAG
AGCAATCATAGAACGGAACGATATAGCGTCCATTGATTTCAAATGGCAAG
TTGCGCGTAACGAAATTTTAGGAGACGTAATTGCATTAACAGCAGCTGTT
TTATATGGTATTTCGAATGTGGGTCAAGAATATTTAGTGAAAAAGTATTC
TGCTCAAATGTATCTCGGTATTGTTGGTATCGTAGGGTTTGTCATTACTG
GCTTGCAAACCTATGTGACAGTTTCACCATTCCAACAACAATGGTTATCT
CCTTTATATTTCTACGGATAAGATACAAAGTGATCCATTACATTGGAGTG
ATTCTGTGTATTGGAGGCGCCGTTTGTTTGATTTTTACCGACGGAAATGA
CAAATCAAATAATGGTTGCTTCTCAAAACGATAGTATCTGGACAAATCCT
ATCTTTAATGTTGAGTGGTACGGGAACGGCCGCTACCGCATTAAGTGTTA
AATACAAAGCGGAAACACCCTCATTGAATGCTTTCTTCATGTATGTCATT
CTCGCTTCGACTTTTGGTGTTTATGCTGCAACGAGAAAAGAATTTAAAAC
AATCGTTCGTAAACATTGGTGGAAATACCTGATTGTAGCTATCCTTGATG
TGGAAGCGAACTATTTGTTGACCAAGGCGTACACTTATACAACGCTAACA
AGTGTGCAGATGATGGTACTAGAAGATGATGAAAAGACGCTGTTGAAACA
TGATGCATTGCAAACCCAGGATGCATTGCAGGCAAGAGAAGCTGTATTAG
ATGTGAAGGAGAAGTCCGCTCTCTTTTCTTCCATCGAACAATCAACGGAA
AGCAATGGAAATTGTTGTCAAAATAAAATTTTTCAAATATGTATTTTGTG
GCATTTGCTGGTATCCTCACTGGACTCATAACATATAATGTCCGCCCACC
ACCTGCCGCCCCGCCCAAACGAAAGAAAAACACCTCAATGAGAATTGAAA
ACGGAGTCGATAAACCGAAAAATTGGACCGAGTCCTCCTTCAAAGCTCAG
AATGGTAATACGTTGTTTTTCTACAAAAATGAAAATGGAATCAATAATCA
TAACCACATCGGTAACGGTAATTTAAATAGTACCTCCTCATTGGTTAATA
ATAGGACTGGACCGAATAGAGATTACTCAGGCTTATGAGCATGTTATATT
TTGCATTTGCAATTTGTCAGTATTTCTACTACACGATGATGCCTGTTGTG
ATGAAATTGAGCAGCGCCACAGTGATGAATCTATCCTTACTCACCTCTGA
CCTGTACACGCTTCTCATTGGTCTACTCATCTTTGATTATCAGAGCAATC
ATAGAACGGAACGATATAGCGTCCATTGATTTCAAATGGCAAGTTGCGCG
TAACGAAATTTTAGGAGACGTAATTGCATTAACAGCAGCTGTTTTATATG
GTATTTCGAATGTGGGTCAAGAATATTTAGTGAAAAAGTATTCTGCTCAA
ATGTATCTCGGTATTGTTGGTATCGTAGGGTTTGTCATTACTGGCTTGCA
AACCTATGTGACAGTTTCACCATTCCAACAACAATGGTTATCTCCTTTAT
ATTTCTACGGATAAGATACAAAGTGATCCATTACATTGGAGTGATTCTGT
GTATTGGAGGCGCCGTTTGTTTGATTTTTACCGACGGAAATGACAAATCA
AATAATGGTTGCTTCTCAAAACGATAGTATCTGGACAAATCCTATCTTTA
ATGTTGAGTGGTACGGGAACGGCCGCTACCGCATTAAGTGTTAAATACAA
AGCGGAAACACCCTCATTGAATGCTTTCTTCATGTATGTCATTCTCGCTT
CGACTTTTGGTGTTTATGCTGCAACGAGAAAAGAATTTAAAACAATCGTT
CGTAAACATTGGTGGAAATACCTGATTGTAGCTATCCTTGATGTGGAAGC
GAACTATTTGTTGACCAAGGCGTACACTTATACAACGCTAACAAGTGTGC
AGATGATGGTACTAGAAGATGATGAAAAGACGCTGTTGAAACATGATGCA
TTGCAAACCCAGGATGCATTGCAGGCAAGAGAAGCTGTATTAGATGTGAA
GGAGAAGTCCGCTCTCTTTTCTTCCATCGAACAATCAACGGAAAGCAATG
GAAATTGTTGTCAAAATAAAATTTTTCAAATATGTATTTTGTGGCATTTG
CTGGTATCCTCACTGGACTCATAACATATAATGTCCGCCCACCACCTGCC
GCCCCGCCCAAACGAAAGAAAAACACCTCAATGAGAATTGAAAACGGAGT
CGATAAACCGAAAAATTGGACCGAGTCCTCCTTCAAAGCTCAGAATGGTA
ATACGTTGTTTTTCTACAAAAATGAAAATGGAATCAATAATCATAACCAC
ATCGGTAACGGTAATTTAAATAGTACCTCCTCATTGGTTAATAATAGGAC
TGGACCGAATAGAGATTACTCAGGCTTATGAGCATGTTATATTTTGCATT
TGCAATTTGTCAGTATTTCTACTACACGATGATGCCTGTTGTGATGAAAT
TGAGCAGCGCCACAGTGATGAATCTATCCTTACTCACCTCTGACCTGTAC
ACGCTTCTCATTGGTCTACTCATCTTTGATTATCAGAGCAATCATAGAAC
GGAACGATATAGCGTCCATTGATTTCAAATGGCAAGTTGCGCGTAACGAA
ATTTTAGGAGACGTAATTGCATTAACAGCAGCTGTTTTATATGGTATTTC
GAATGTGGGTCAAGAATATTTAGTGAAAAAGTATTCTGCTCAAATGTATC
TCGGTATTGTTGGTATCGTAGGGTTTGTCATTACTGGCTTGCAAACCTAT
GTGACAGTTTCACCATTCCAACAACAATGGTTATCTCCTTTATATTTCTA
CGGATAAGATACAAAGTGATCCATTACATTGGAGTGATTCTGTGTATTGG
AGGCGCCGTTTGTTTGATTTTTACCGACGGAAATGACAAATCAAATAATG
GTTGCTTCTCAAAACGATAGTATCTGGACAAATCCTATCTTTAATGTTGA
GTGGTACGGGAACGGCCGCTACCGCATTAAGTGTTAAATACAAAGCGGAA
ACACCCTCATTGAATGCTTTCTTCATGTATGTCATTCTCGCTTCGACTTT
TGGTGTTTATGCTGCAACGAGAAAAGAATTTAAAACAATCGTTCGTAAAC
ATTGGTGGAAATACCTGATTGTAGCTATCCTTGATGTGGAAGCGAACTAT
TTGTTGACCAAGGCGTACACTTATACAACGCTAACAAGTGTGCAGATGAT
GGTACTAGAAGATGATGAAAAGACGCTGTTGAAACATGATGCATTGCAAA
CCCAGGATGCATTGCAGGCAAGAGAAGCTGTATTAGATGTGAAGGAGAAG
TCCGCTCTCTTTTCTTCCATCGAACAATCAACGGAAAGCAATGGAAATTG
TTGTCAAAATAAAATTTTTCAAATATGTATTTTGTGGCATTTGCTGGTAT
CCTCACTGGACTCATAACATATAATGTCCGCCCACCACCTGCCGCCCCGC
CCAAACGAAAGAAAAACACCTCAATGAGAATTGAAAACGGAGTCGATAAA
CCGAAAAATTGGACCGAGTCCTCCTTCAAAGCTCAGAATGGTAATACGTT
GTTTTTCTACAAAAATGAAAATGGAATCAATAATCATAACCACATCGGTA
ACGGTAATTTAAATAGTACCTCCTCATTGGTTAATAATAGGACTGGACCG
AATAGAGATTACTCAGGCTTATGAGCATGTTATATTTTGCATTTGCAATT
TGTCAGTATTTCTACTACACGATGATGCCTGTTGTGATGAAATTGAGCAG
CGCCACAGTGATGAATCTATCCTTACTCACCTCTGACCTGTACACGCTTC
TCATTGGTCTACTCATCTTTGATTATCAGAGCAATCATAGAACGGAACGA
TATAGCGTCCATTGATTTCAAATGGCAAGTTGCGCGTAACGAAATTTTAG
GAGACGTAATTGCATTAACAGCAGCTGTTTTATATGGTATTTCGAATGTG
GGTCAAGAATATTTAGTGAAAAAGTATTCTGCTCAAATGTATCTCGGTAT
TGTTGGTATCGTAGGGTTTGTCATTACTGGCTTGCAAACCTATGTGACAG
TTTCACCATTCCAACAACAATGGTTATCTCCTTTATATTTCTACGGATAA
GATACAAAGTGATCCATTACATTGGAGTGATTCTGTGTATTGGAGGCGCC
GTTTGTTTGATTTTTACCGACGGAAATGACAAATCAAATAATGGTTGCTT
CTCAAAACGATAGTATCTGGACAAATCCTATCTTTAATGTTGAGTGGTAC
GGGAACGGCCGCTACCGCATTAAGTGTTAAATACAAAGCGGAAACACCCT
CATTGAATGCTTTCTTCATGTATGTCATTCTCGCTTCGACTTTTGGTGTT
TATGCTGCAACGAGAAAAGAATTTAAAACAATCGTTCGTAAACATTGGTG
GAAATACCTGATTGTAGCTATCCTTGATGTGGAAGCGAACTATTTGTTGA
CCAAGGCGTACACTTATACAACGCTAACAAGTGTGCAGATGATGGTACTA
GAAGATGATGAAAAGACGCTGTTGAAACATGATGCATTGCAAACCCAGGA
TGCATTGCAGGCAAGAGAAGCTGTATTAGATGTGAAGGAGAAGTCCGCTC
TCTTTTCTTCCATCGAACAATCAACGGAAAGCAATGGAAATTGTTGTCAA
AATAAAATTTTTCAAATATGTATTTTGTGGCATTTGCTGGTATCCTCACT
GGACTCATAACATATAATGTCCGCCCACCACCTGCCGCCCCGCCCAAACG
AAAGAAAAACACCTCAATGAGAATTGAAAACGGAGTCGATAAACCGAAAA
ATTGGACCGAGTCCTCCTTCAAAGCTCAGAATGGTAATACGTTGTTTTTC
TACAAAAATGAAAATGGAATCAATAATCATAACCACATCGGTAACGGTAA
TTTAAATAGTACCTCCTCATTGGTTAATAATAGGACTGGACCGAATAGAG
ATTACTCAGGCTTATGAGCATGTTATATTTTGCATTTGCAATTTGTCAGT
ATTTCTACTACACGATGATGCCTGTTGTGATGAAATTGAGCAGCGCCACA
GTGATGAATCTATCCTTACTCACCTCTGACCTGTACACGCTTCTCATTGG
TCTACTCATCTTTGATTATCAGAGCAATCATAGAACGGAACGATATAGCG
TCCATTGATTTCAAATGGCAAGTTGCGCGTAACGAAATTTTAGGAGACGT
AATTGCATTAACAGCAGCTGTTTTATATGGTATTTCGAATGTGGGTCAAG
AATATTTAGTGAAAAAGTATTCTGCTCAAATGTATCTCGGTATTGTTGGT
ATCGTAGGGTTTGTCATTACTGGCTTGCAAACCTATGTGACAGTTTCACC
ATTCCAACAACAATGGTTATCTCCTTTATATTTCTACGGATAAGATACAA
AGTGATCCATTACATTGGAGTGATTCTGTGTATTGGAGGCGCCGTTTGTT
TGATTTTTACCGACGGAAATGACAAATCAAATAATGGTTGCTTCTCAAAA
CGATAGTATCTGGACAAATCCTATCTTTAATGTTGAGTGGTACGGGAACG
GCCGCTACCGCATTAAGTGTTAAATACAAAGCGGAAACACCCTCATTGAA
TGCTTTCTTCATGTATGTCATTCTCGCTTCGACTTTTGGTGTTTATGCTG
CAACGAGAAAAGAATTTAAAACAATCGTTCGTAAACATTGGTGGAAATAC
CTGATTGTAGCTATCCTTGATGTGGAAGCGAACTATTTGTTGACCAAGGC
GTACACTTATACAACGCTAACAAGTGTGCAGATGATGGTACTAGAAGATG
ATGAAAAGACGCTGTTGAAACATGATGCATTGCAAACCCAGGATGCATTG
CAGGCAAGAGAAGCTGTATTAGATGTGAAGGAGAAGTCCGCTCTCTTTTC
TTCCATCGAACAATCAACGGAAAGCAATGGAAATTGTTGTCAAAATAAAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012463XLOC_012463Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022235-proteinTCONS_00022235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022235-exon-sc0000408-1575043694:194682..194901TCONS_00022235-exon-sc0000408-1575043694:194682..194901Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1575043694:193703..193997TCONS_00022235-exon-sc0000408-1575043694:193703..193997Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1575043694:193184..193337TCONS_00022235-exon-sc0000408-1575043694:193184..193337Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1575043694:192577..192733TCONS_00022235-exon-sc0000408-1575043694:192577..192733Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1575043694:192211..192263TCONS_00022235-exon-sc0000408-1575043694:192211..192263Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1575043694:191001..191155TCONS_00022235-exon-sc0000408-1575043694:191001..191155Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1575043694:189987..190527TCONS_00022235-exon-sc0000408-1575043694:189987..190527Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:194682..194901TCONS_00022235-exon-sc0000408-1510915933:194682..194901Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:193703..193997TCONS_00022235-exon-sc0000408-1510915933:193703..193997Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:193184..193337TCONS_00022235-exon-sc0000408-1510915933:193184..193337Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:192577..192733TCONS_00022235-exon-sc0000408-1510915933:192577..192733Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:192211..192263TCONS_00022235-exon-sc0000408-1510915933:192211..192263Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:191001..191155TCONS_00022235-exon-sc0000408-1510915933:191001..191155Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1510915933:189987..190527TCONS_00022235-exon-sc0000408-1510915933:189987..190527Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:194682..194901TCONS_00022235-exon-sc0000408-1491911889:194682..194901Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:193703..193997TCONS_00022235-exon-sc0000408-1491911889:193703..193997Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:193184..193337TCONS_00022235-exon-sc0000408-1491911889:193184..193337Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:192577..192733TCONS_00022235-exon-sc0000408-1491911889:192577..192733Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:192211..192263TCONS_00022235-exon-sc0000408-1491911889:192211..192263Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:191001..191155TCONS_00022235-exon-sc0000408-1491911889:191001..191155Clytia hemisphaericaexon
TCONS_00022235-exon-sc0000408-1491911889:189987..190527TCONS_00022235-exon-sc0000408-1491911889:189987..190527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:189987..194901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79937	2.55801	0.617543	0.17262	21.1899	13.0283	12.2211	12.004	4.35533	8.94612	3.1049	2.7516	1.93459	1.90146	0.352949	0	3.27551	3.13747	1.8774	2.11155	1.15512	1.06561	1.6974	3.11344	0.79356	2.41401	1.59944	1.74832	0.576538	0.715683
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009262SLC35_F1/F2/F6
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00022235 vs. Swiss-Prot (Human)
Match: S35F2 (Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.129e-58
Identity = 129/294 (43.88%), Postives = 195/294 (66.33%), Query Frame = 3 
Query:  225 LLKTIVSGQILSLMLSGTGTAATALSVKYKAETPSLNAFFMYVILASTFGVYAATRK---EFKTIVRKHWWKYLIVAILDVEANXXXXXXXXXXXXXSVQLCDSFTIPTTMVISFIFLRIRYKVIHYIGVILCIGGAVCLIFTD--GNDKSNNARNEILGDVIALTAAVLYGISNVGQEYLVKKYSAQMYLXXXXXXXXXXTGLQTAIIERNDIASIDFKWQVGMLYFAFAICQYFYYTMMPVVMKLSSATVMNXXXXXXXXXXXXXXXXXFDYQFSNMYFVAFAGILTGLITY 1091
            +LKTI  GQ+LSL + GT   +  L+ +YK  TP L +F  Y +L   + V  A R        I+++ WWKY+++ + DVEANY++ +AY YTTLTSVQL D F IP  M +S+  L  RY+VIH+I V +C+ G   ++  D     + N+  + ++GD++ L  A LY ISNV +EY+VKK S Q +LG+VG+ G +I+G+Q  I+E  DIASI + W++ +L+ AFA+C +  Y+ MP+V+K++SAT +NL +LT+DLY+L +GL +F Y+FS +Y ++F  I+ G I Y
Sbjct:   39 ILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRSGSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAISNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGILTADLYSLFVGLFLFGYKFSGLYILSFTVIMVGFILY 332
The following BLAST results are available for this feature:
BLAST of TCONS_00022235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F22.129e-5843.88Solute carrier family 35 member F2 OS=Homo sapiens... [more]
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