TCONS_00022234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022234
Unique NameTCONS_00022234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022234 ID=TCONS_00022234|Name=TCONS_00022234|organism=Clytia hemisphaerica|type=transcript|length=1527bp
GTAAattaaacatttcaaattaccGTCGCATTGCATGATGGTACTAGAAG
ATGATGAAAAGACGCTGTTGAAACATGATGCATTGCAAACCCAGGATGCA
TTGCAGGCAAGAGAAGCTGTATTAGATGTGAAGGAGAAGTCCGCTCTCTT
TTCTTCCATCGAACAATCAACGGAAAGCAATGGAAATTGTTGTCAAAATA
AAATGTTGCTTCTCAAAACGATAGTATCTGGACAAATCCTATCTTTAATG
TTGAGTGGTACGGGAACGGCCGCTACCGCATTAAGTGTTAAATACAAAGC
GGAAACACCCTCATTGAATGCTTTCTTCATGTATGTCATTCTCGCTTCGA
CTTTTGGTGTTTATGCTGCAACgagaaaagaatttaaaacaatCGTTCGT
AAACATTGGTGGAAATACCTGATTGTAGCTATCCTTGATGTGGAAGCGAA
CTATTTGTTGACCAAGGCGTACACTTATACAACGCTAACAAGTGTGCAGC
TATGTGACAGTTTCACCATTCCAACAACAATGGTTATCTCCTTTATATTT
CTACGGATAAGATACAAAGTGATCCATTACATTGGAGTGATTCTGTGTAT
TGGAGGCGCcgtttgtttgatttttaccgacgGAAATGACAAATCAAATA
ATGCGCGTAACGAAATTTTAGGAGACGTAATTGCATTAACAGCAGCTGTT
TTATATGGTATTTCGAATGTGGGTCAAGAATATTTAGTGAAAAAGTATTC
TGCTCAAATGTATCTCGGTATTGTTGGTATCGTAGGGTTTGTCATTACTG
GCTTGCAAACagCAATCATAGAACGGAACGATATAGCGTCCATTGATTTC
AAATGGCAAGTTGTATTTCTACTACACGATGATGCCTGTTGTGATGAAAT
TGAGCAGCGCCACAGTGATGAATCTATCCTTACTCACCTCTGACCTGTAC
ACGCTTCTCATTGGTCTACTCATCTTTGATTATCAGttTTCAAATATGTA
TTTTGTGGCATTTGCTGGTATCCTCACTGGACTCATAACATATAATGTCC
GCCCACCACCTGCCGCCCCGCCCAAACGAAAGAAAAACACCTCAATGAGA
ATTGAAAACGGAGTCGATAAACCGAAAAATTGGACCGAGTCCTCCTTCAA
AGCTCAGAATGGTAATACGttgtttttctacaaaaatgaaaatggaatca
ATAATCATAACCACATCGGTAACGGTAATTTAAATAGTACCTCCTCATTG
GTTAATAATAGGACTGGACCGAATAGAGATTACTCAGGCTTATGAGGTGC
TGTATATTGTTTGATGAAGAGACTttgataaaacattttttgatgattta
tATATGACTAGATAGatagtttttaacaaatttatCCGACCCTTTATATT
atatcttatttaaaaaagtatattttattgATTATCATTTTTTCGATACC
AACTGTATATGATGTTAATTTATACACCTTTATAGTTAGACCTCTCCATG
CCACCACCTTTAGGATAAACATTAGGC
Run BLAST on NCBI

transcript from alignment at sc0000408:189987..194885-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022234 ID=TCONS_00022234|Name=TCONS_00022234|organism=Clytia hemisphaerica|type=transcript|length=4899bp|location=Sequence derived from alignment at sc0000408:189987..194885- (Clytia hemisphaerica)
GTAAATTAAACATTTCAAATTACCGTCGCATTGCATGATGGTACTAGAAG
ATGATGAAAAGACGCTGTTGAAACATGATGCATTGCAAACCCAGGATGCA
TTGCAGGCAAGAGAAGCTGTATTAGATGTGAAGGAGAAGTCCGCTCTCTT
TTCTTCCATCGAACAATCAACGGAAAGCAATGGAAATTGTTGTCAAAATA
AAATGTGAGAGATTTATTTATCATTACCATTTGAAATAACCAAGCTGATG
ATTCAAGTTAACTTATCGGCCAAAACTTAGTCGGCCCTAAGTGACTACAT
TTTGACGAGCCGACTGAAATTAAGGCTGACTAAGTTTTGGCCGATAAGGT
ATAGCAGCGCTGAAGCGGGTTTTTTTCGTCAACAGGCGAAGACCTACGCT
AGCTGCCGAATATCTGCAGATTTAATGCGTGATCATATTTCCAGTGGTCA
AAGATCTTAACAGACCACCAAAAACCTGCAAAACTTACACATTTAAGAAT
CTAAATGCGAACAATTACCTTAGGTTTTTAAAAATCAAGTCAATTAAACT
GTTTTTGTTATCAAACTATTGAAGGCCTTGTTTGGTCTTCGTCTGTTGGT
GGAAAAAAATCCGCAGCGCCGAGCTCACGCCACTGTTTCGTGACAGTGGT
AAAAAACGAAGAACTTTGAGTTTTGTGCCGAAACGAAGACAAAATTTTCC
CGCTGTTTTCATTGAAATGAGACGCTTCTTTCACAGTCACCATTAGACTC
GTGCTAGCATGCTATACAATGAAATAAAATCCCTCTTATTATTTTATTTA
AACTTAAATTTTACCCTTTTTACCATTGCTGCACTTGCAAACTTTGACCA
ATGCAACACTCACACTGAATTTAATTTGTCCTTTTCAGGTTGCTTCTCAA
AACGATAGTATCTGGACAAATCCTATCTTTAATGTTGAGTGGTACGGGAA
CGGCCGCTACCGCATTAAGTGTTAAATACAAAGCGGAAACACCCTCATTG
AATGCTTTCTTCATGTATGTCATTCTCGCTTCGACTTTTGGTGTTTATGC
TGCAACGAGAAAAGAATTTAAAACAATCGTTCGTAAACATTGGTGGAAAT
ACCTGATTGTAGCTATCCTTGATGTGGAAGCGAACTATTTGTTGACCAAG
GCGTACACTTATACAACGCTAACAAGTGTGCAGGTAAGGAGACTAATTGC
ATACAAATCCACGTACCACCTCTTTATTTCACTGGCAGACACAATCGCAG
TACAATCGCTATCAAAAATTCTGAAAAAGCGAACTTAGAGGTTGGGTATG
AGCTTGGATTAATTGTTTCATCAAACTAAAGATACGATTTTCCTATGTAT
GGTATCTTAGTTTTACTGAGACGTTTTTTTTTTTACTGATAATGAGTTAT
TGTACTGGGTAATGGTTATCTGTTGATGCCAGGTACAAATTCTAGACCGC
CATCCTATTGGTAATCTCTTTACTATCTGAGAGTCTGAAATATCTTTTGT
GAATATTATTTTTCCCAATATCATACTTAACTCTTATCTCTCCAATAGCT
ATGTGACAGTTTCACCATTCCAACAACAATGGTTATCTCCTTTATATTTC
TACGGATAAGATACAAAGTGATCCATTACATTGGAGTGATTCTGTGTATT
GGAGGCGCCGTTTGTTTGATTTTTACCGACGGAAATGACAAATCAAATAA
TGGTAAGAATATAATTTTGATAATTGAAATCTTAATCTATATTTCAATTA
AATTCCCCGATTAGCTCGGCTAACACCTATCTCACGCATGGTAATATCTA
CCAAAGTTTCACGTTTGCTTTTCCTGAGACGTGCGGGGCATTAATAGTTC
TCATAAAAAGGGTGTTTTAAGAGATTAAAGCAGTAGAATGTAGCCAGCGC
ATTCCCACAAATCAAATTTTTAAACGCAGTAAAAAANTTTTAAGAGATTA
AAGCAGTAGAATGTAGCCAGCGCATTCCCACAAATCAATTTTTTAAACGC
AGTAAAAAAAGCGTTTCTTGTCTAACAGGCTAGGTAGAATGTGGTTGAAA
GTGATTTTTTCCCAATCCCGAAGAATCTTTTCTGCCGAACTAGTGGTGGG
AACTGTTAGATTACCAATTTAGAAAAAAAACAAAACTTTTATTCTATTTC
AGCGCGTAACGAAATTTTAGGAGACGTAATTGCATTAACAGCAGCTGTTT
TATATGGTATTTCGAATGTGGGTCAAGAATATTTAGTGAAAAAGTATTCT
GCTCAAATGTATCTCGGTATTGTTGGTATCGTAGGGTTTGTCATTACTGG
CTTGCAAACGTAAGCATATTTTACAAACTGGAGCCCAGTTCCTTATGACG
AGTTTGGTGTAAATTCGATTATAATCAATAGAACATGGTATGGAAGCTGA
TATTGATCACATGATCAAAATCCACAAAATAAAATTCAACCAAAGTGTCC
AAGTGATATTAATCCAATATATAAGAATCCGTCTGTCATAAATTTTGAGG
ATCTGGTTTGATTGGGACGGGCTAAAATATTAGGTGCTTTGGGTCAATAA
ATTTACATAAAAAAACAACAACTTATTATAACCTTTTCAATAGTTTTTAA
TTAATATCTTTTGATATTTTAGAGCAATCATAGAACGGAACGATATAGCG
TCCATTGATTTCAAATGGCAAGTTGGTAAGTGACATCACAAAGTCATCGA
TTTGTGCTTAAATCCTTAAAAACGAAGCCGGTTAATTTTGTTTAATCTAA
GCTTTTGAAAACGACAATAACTGAAGGCAAAAATTATAAACCATCCCTCC
AATAAAAATGCGAAATTACGAAAGAAACAATTTCCTCTAAGAACTAAAGC
CAACTCGGTGTCACGGATGAGAAAAGTCACGCTGTTATCTAGATTCCCTA
AGCTACCCCTGTCTCACAGCCCTGGTGAATAACTTCTTCCCTCATTAGGA
TGAAAATGTCTATCAGGATCCCAATGGGGATTGTTCTTAGGTCAAATTAT
CCAGTGGGGATGGTTTTTGAGTGTATATTTTTCGTTAAATTTTAAATTGG
GATGAAAAGAAATACAATATTCCAGTAGGACTGAAATTGGAGGGTATTTT
TCCCACCGGGACAAAATTTTGACTAATTCTGTTCTATGCTTTAATGGGAT
AAATTTTCGCGGGGATTAATTTTCGCGGATTTCGCGGATTTGGGTGTCAT
CCGCGAAAATAAGTCCCATTGGAAATTTGAAAAAGGCCCATCCGCGAAAA
TTAGTTTCCGCGAAAAATTTGAATTTTTGTTGCAATCCGCGAAATTTCTA
TTTTTATCGTTTTTTATTTTTTTCAACTTTTGATAGTTGTAATACATATC
TCCTCGCCCTGTTCCAAAACACCCTCTTATTACTTGAAAAAAAATTCTTA
ATTTTCCTGGAAAAATTTTATTTCAATGTTTTGACCCTTTTCAAAAAATT
TAATTTGTACCCCAATCCGCGAAATAAAATCCCGCGAAAAATCAGGAAAT
CCCTCATCCGCGAAAATTAATCCCCGCGAAATCTTAAAATTTCGCGGATG
AGCTCAACCGCGAAATTTAATCCCCGCGAAAATTAATCCCCGCGAAATCT
TAAAATTTCGCGGATGAGCTCAACCGCGAAATTTAATCCCCGCGAAAATT
TATCCCATTAAAGTAGACAAATGAGAATTTTCATAATCCCAGCTCATCAG
TCCAGTCTAACTATATATTTTGAATTTTAGGCATGTTATATTTTGCATTT
GCAATTTGTCAGTATTTCTACTACACGATGATGCCTGTTGTGATGAAATT
GAGCAGCGCCACAGTGATGAATCTATCCTTACTCACCTCTGACCTGTACA
CGCTTCTCATTGGTCTACTCATCTTTGATTATCAGGTATGTAATAACGCC
ATCTTTTTTAATCAGTAAGTAAGACGTGCTTCTCCACATGGTGACGATAA
TATTGTGTGTTTTCTGAGTATAGCTTTTGGCATTGTGACGCTTAAACTGA
CTTTTCTAAATTTTTAAAAAGTACACCAAAACAAGGGTATTAAATTAAGC
ATTTTAGTATTTTTGATGGGATTTTTTTTTATAATTCTTTAAATAACTGA
TGATGTTAGAAGTTATTTTATGAAGGGAAGTATCTTGTTCAAAATAGAAA
TATCAATATAATTGACTAAATTCAAAAAGCTGTACCTCAAAGTTTAAGTT
AGACTATCCTCCTTCTAATAAAAGCATTGAGATCAATTAAATATTACATT
TGACCTGGTTTGATTATTAAACGTCCAAAGTATTTTTGCGAGTCACCCAG
CAGTGAGTTGTGACTCTGTAGTAAATGATTCTTACTTACACTTTTTTATT
TTCTTTAGTTTTCAAATATGTATTTTGTGGCATTTGCTGGTATCCTCACT
GGACTCATAACATATAATGTCCGCCCACCACCTGCCGCCCCGCCCAAACG
AAAGAAAAACACCTCAATGAGAATTGAAAACGGAGTCGATAAACCGAAAA
ATTGGACCGAGTCCTCCTTCAAAGCTCAGAATGGTAATACGTTGTTTTTC
TACAAAAATGAAAATGGAATCAATAATCATAACCACATCGGTAACGGTAA
TTTAAATAGTACCTCCTCATTGGTTAATAATAGGACTGGACCGAATAGAG
ATTACTCAGGCTTATGAGGTGCTGTATATTGTTTGATGAAGAGACTTTGA
TAAAACATTTTTTGATGATTTATATATGACTAGATAGATAGTTTTTAACA
AATTTATCCGACCCTTTATATTATATCTTATTTAAAAAAGTATATTTTAT
TGATTATCATTTTTTCGATACCAACTGTATATGATGTTAATTTATACACC
TTTATAGTTAGACCTCTCCATGCCACCACCTTTAGGATAAACATTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012463XLOC_012463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022234-exon-sc0000408-1575043694:194682..194885TCONS_00022234-exon-sc0000408-1575043694:194682..194885Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1575043694:193703..193997TCONS_00022234-exon-sc0000408-1575043694:193703..193997Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1575043694:193184..193337TCONS_00022234-exon-sc0000408-1575043694:193184..193337Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1575043694:192577..192733TCONS_00022234-exon-sc0000408-1575043694:192577..192733Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1575043694:192211..192263TCONS_00022234-exon-sc0000408-1575043694:192211..192263Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1575043694:191001..191123TCONS_00022234-exon-sc0000408-1575043694:191001..191123Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1575043694:189987..190527TCONS_00022234-exon-sc0000408-1575043694:189987..190527Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:194682..194885TCONS_00022234-exon-sc0000408-1510915933:194682..194885Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:193703..193997TCONS_00022234-exon-sc0000408-1510915933:193703..193997Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:193184..193337TCONS_00022234-exon-sc0000408-1510915933:193184..193337Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:192577..192733TCONS_00022234-exon-sc0000408-1510915933:192577..192733Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:192211..192263TCONS_00022234-exon-sc0000408-1510915933:192211..192263Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:191001..191123TCONS_00022234-exon-sc0000408-1510915933:191001..191123Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1510915933:189987..190527TCONS_00022234-exon-sc0000408-1510915933:189987..190527Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:194682..194885TCONS_00022234-exon-sc0000408-1491911889:194682..194885Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:193703..193997TCONS_00022234-exon-sc0000408-1491911889:193703..193997Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:193184..193337TCONS_00022234-exon-sc0000408-1491911889:193184..193337Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:192577..192733TCONS_00022234-exon-sc0000408-1491911889:192577..192733Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:192211..192263TCONS_00022234-exon-sc0000408-1491911889:192211..192263Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:191001..191123TCONS_00022234-exon-sc0000408-1491911889:191001..191123Clytia hemisphaericaexon
TCONS_00022234-exon-sc0000408-1491911889:189987..190527TCONS_00022234-exon-sc0000408-1491911889:189987..190527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:189987..194885 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.44664e-09	0	0	3.73691	6.82285e-10	1.4713e-09	0	1.02715e-09	4.57019e-05	0	0	0	2.68869e-06	0.442881	0	0	0	0.476458	0	0	0	0	0.564764	0	0	0	0	0
Blast
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BLAST of TCONS_00022234 vs. Swiss-Prot (Human)
Match: S35F2 (Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.531e-42
Identity = 99/233 (42.49%), Postives = 145/233 (62.23%), Query Frame = 2 
Query:  209 LLKTIVSGQILSLMLSGTGTAATALSVKYKAETPSLNAFFMYVILASTFGVYAATRK---EFKTIVRKHWWKYLIVAILDVEANXXXXXXXXXXXXXSVQLCDSFTIPTTMVISFIFLRIRYKVIHYIGVILCIGGAVCLIFTD--GNDKSNNARNEILGDVIALTAAVLYGISNVGQEYLVKKYSAQMYLXXXXXXXXXXTGLQTAIIERNDIASIDFKWQVVFLLHDDACC 892
            +LKTI  GQ+LSL + GT   +  L+ +YK  TP L +F  Y +L   + V  A R        I+++ WWKY+++ + DVEANY++ +AY YTTLTSVQL D F IP  M +S+  L  RY+VIH+I V +C+ G   ++  D     + N+  + ++GD++ L  A LY ISNV +EY+VKK S Q +LG+VG+ G +I+G+Q  I+E  DIASI + W++  L    A C
Sbjct:   39 ILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRSGSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHARYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAISNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALC 271
The following BLAST results are available for this feature:
BLAST of TCONS_00022234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F24.531e-4242.49Solute carrier family 35 member F2 OS=Homo sapiens... [more]
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