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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022232 ID=TCONS_00022232|Name=TCONS_00022232|organism=Clytia hemisphaerica|type=transcript|length=4381bpRun BLAST on NCBI protein sequence of TCONS_00022232-protein >TCONS_00022232-protein ID=TCONS_00022232-protein|Name=TCONS_00022232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1207bp MDLNDNKKVWAPDGRDGFCLGKVVDIGTDAITVELVNGKNVSAPYKRVFARun BLAST on NCBI transcript from alignment at sc0000408:52956..86916- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022232 ID=TCONS_00022232|Name=TCONS_00022232|organism=Clytia hemisphaerica|type=transcript|length=33961bp|location=Sequence derived from alignment at sc0000408:52956..86916- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000408:52956..86916- >TCONS_00022232 ID=TCONS_00022232|Name=TCONS_00022232|organism=Clytia hemisphaerica|type=CDS|length=115968bp|location=Sequence derived from alignment at sc0000408:52956..86916- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022232 vs. Swiss-Prot (Human)
Match: MYO6 (Unconventional myosin-VI OS=Homo sapiens GN=MYO6 PE=1 SV=4) HSP 1 Score: 1266.14 bits (3275), Expect = 0.000e+0 Identity = 668/1288 (51.86%), Postives = 887/1288 (68.87%), Query Frame = 3
Query: 24 LNDNKKVWAPDGRDGFCLGKVVDIGTDAITVELVN--GKNVSAPYKRVFASEDDNNKDHDDNCALMYLNEATLLNNIKIRYKTDKIYTYVANILIALNPYHELAGLYSKQSIEIYKGKSLGMLPPHVYAIADKTYRDMKVLKQSQSIIVSGESGAGKTESTKYILRYLTEAYGHGGVGNIEKRIVEANPLLEAFGNAKTLRNLNSSRFGKYVEVHFNNKPELAGAFISHYLLEKSRIVRQSAGERNYHVFYRMCAGAPSDMKSALRLSDAKTFNYLNRG---------------------------SLSERGIDDVRDFQMLDNAMNAVGLSTADKSNIYRIAAAVLHLGNINFQESTKDKKGGSELSPASETSAAITAKLLGLHQNELAMSLTTRIXXXXXXXXXXXXYKIPLSPAQAAAGRDALAKSIYSNLFDHIVSCINKCFPFKDSANYIGVLDIAGFEFFEVNSFEQLCINYCNEKLQQFFNQRILKEEQALYEKEGLGVKTVNYADNQDCIDLFEMKATGLFDLLDEEMKFPSPSETHFTTELHSKNNKHFRLAIPRKSPLSIHRSVRDDQGFLVRHFAGAVCYQTVEFLEKNNDALHDSLEQLVLESSDPFLKSLFPAPKPQANSKPGGKVKKLAFDSVGKKFRRQLDLLLEKLRSTGSNFIRCIKPNDQMKSRDFEGAQILSQLQCAGMVSVLELMQEGYPSRTAFLDLHTKYKSFLPPKLAKLDPRTFCNALFRAVGMDNDDFKFGMTKVFFRPGKFAEFDQIMRSDPQALNALISKVNKWIIRNRWKRATWCALSVQKLANKIKFRREMLVRIQKTVKMFINVRKHKPRYKGLIKMRTLEVQANQMSSLVSALKKDKDKFNKEVMKLKENVQKAIQQIKQSMMKQGAIDKLYDALVKDINKQLNSLKSQKAAQEEQERLRKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQKRKAE-----EEKVQASMEKAKKEEDQKNLEISQREEQEQRDYELALRLAADPQTMVSDER---VQLKRNI--------------------------------------ATTDAKYEKIRKWTYAELRDVINTSCDLDMLEACRVEYHRRLKVYHAW----RKRNMEKNKNAPKA--------------QRAPVELI--RQAELXXXXXXXXXXXXXXXXXXQRYFRVPFSKPTDQYRDREYTKSGWWYAHFDGNYIARQLEIHPN-GALLLVAGKNDEEICELSLTETRLESRSGAEITVDEFNDVWTSYGG 3599
+ D K VWAP DGF +G +VDIG D++T+E +N GK A +VF +E+D+ KD +DNC+LMYLNEATLL+NIK+RY D+IYTYVANILIA+NPY ++ +YS ++I+ Y+GKSLG PPHV+AIADK +RDMKVLK SQSIIVSGESGAGKTE+TK++LRYLTE+YG G +I+ RIVEANPLLEAFGNAKT+RN NSSRFGK+VE+HFN K + G F+SHYLLEKSRI Q ERNYH+FYR+CAGA D++ L LS F YLNRG S+ + +DD DF + AM +GL +K +++R+ A VLHLGNI+F+E+ GG L S S A+LLGL Q++L +SLTTR+M+T GG GT+ K+PL QA RDALAK++YS+LFDH+V+ +N+CFPF+ S+ +IGVLDIAGFE+FE NSFEQ CINYCNEKLQQFFN+RILKEEQ LY+KEGLGV V+Y DNQDCIDL E K G+ D+LDEE + P PS+ HFT+ +H K+ HFRL IPRKS L++HR++RDD+GF++RHFAGAVCY+T +F+EKNNDALH SLE L+ ES D F++ LF + N K KL+F SVG KF+ QL+LLL+KLRSTG++FIRCIKPN +M S FEGAQILSQLQC+GMVSVL+LMQ GYPSR +F +L+ YK ++P KLA+LDPR FC ALF+A+G++ +D+KFG+TKVFFRPGKFAEFDQIM+SDP L L+ +VN W+ +RWK+ WC+LSV KL NKIK+R E +++QKT++M++ R+HKPR GL+K+ TL+ + ++ + +VS LK K + NK++ L+ ++ + +IK +MM Q I K YDALVK + L++L+ +K +EE ERLR+IQE+ME E+++REE+EK+R +E+ + + + EAK K+E ++K++ + + +V+A + + K+EE Q+ + EQE+RD ELALR+A ++SDE + L+R++ A K + KW YAELRD INTSCD+++L ACR E+HRRLKVYHAW +KRN E + APK+ Q+ P I RQ E+ N QR+FR+PF +P DQY+D + K GWWYAHFDG +IARQ+E+HP+ +LLVAGK+D E+CEL+L ET L + GAEI +F ++W GG
Sbjct: 1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSEAIKSYQGKSLGTRPPHVFAIADKAFRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQ--DIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIREKLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSMKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG-STSGGCNLKNKSAQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGTKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEAKLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLTIPRKSKLAVHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFES-STNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGYPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLTCSRWKKVQWCSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKRLDKFNEVVSVLKDGKPEMNKQIKNLEISIDTLMAKIKSTMMTQEQIQKEYDALVKSSEELLSALQKKKQQEEEAERLRRIQEEMEKERKRREEDEKRRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKRIQAEVEAQLARQKEEESQQQAVL----EQERRDRELALRIAQSEAELISDEAQADLALRRSLDSYPVSKNDGTRPKMTPEQMAKEMSEFLSRGPAVLATKAAAGTKKYDLSKWKYAELRDTINTSCDIELLAACREEFHRRLKVYHAWKSKNKKRNTETEQRAPKSVTDYDFAPFLNNSPQQNPAAQIPARQREI-------------EMNRQQRFFRIPFIRPADQYKDPQSKKKGWWYAHFDGPWIARQMELHPDKPPILLVAGKDDMEMCELNLEETGLTRKRGAEILPRQFEEIWERCGG 1267 The following BLAST results are available for this feature:
BLAST of TCONS_00022232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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