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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022227 ID=TCONS_00022227|Name=TCONS_00022227|organism=Clytia hemisphaerica|type=transcript|length=199bp
TCAAAAATGTATCAACGTAAATACGCCTTTTTGAAGCACCAAGCTGGCTG
TCTTACAAAAGAATTGGCAGCAGATGATGTTGTTGTTGATGAAAATGCTA
AACATACCGTGATCAAAGATAAAGCTGcttttGAAGCAGAAGGGATACGT
CTCGtcgaaaaatctttgaaatgtGTAAAGAGTGATAAAGACCTCCAAG Run BLAST on NCBI transcript from alignment at sc0000408:292016..293729+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022227 ID=TCONS_00022227|Name=TCONS_00022227|organism=Clytia hemisphaerica|type=transcript|length=1714bp|location=Sequence derived from alignment at sc0000408:292016..293729+ (Clytia hemisphaerica)
TCAAAAATGTATCAACGTAAATACGCCTTTTTGAAGCACCAAGCTGGCTG
TAAGTAACAATATtattaaattcaactttttcttgTATTACTATTAATGC
ATCTAAAAGATTGAATATATGACCTCTCTTTCAAATCATTTATGTATGTC
CGACCTAAAAACTGACCTACTAAAAATAATGgacaaaaatggacaaaaat
cgGCCTAAATTCTCCATTTTTGCTGACCTGCTTCAGATAGATTCACAAGG
CTGCCTCTAATGTCTAAAGGAAGAcacagtttttcaaaaaattagaaaat
ttacaATGAggcttttcaaaataaatgttgctttttttagcttaaaattt
gtttttacgACATTTCACATAGTCAACATTTTATTTATTCAGGTCTTACA
AAAGAATTGGCAGCAGATGATGTTGTTGTTGATGAAAATGCTAAACATAC
CGTGATCAAAGATAAAGCTGGTGAGTTGTACCAAGATTTGGTGACCAGCA
AATTGTAAATGTACTGTTAAATTAAACCTGACAACTAACCCATTAGGTTA
AAAACCAACTTTGCCACCCACTTTACTTTATTAATAACATTGAGTTATTG
GCAATAACTTATATTGGCTTACTGGCTATGGGAAAGTTGTCAGGTTTCAA
GTGACAGGCTTTATCATTAATCATTTATAGTATCGTGGGAGACATCTACA
TTTTTTCTATAAAGCAGTATTTTCTATAGTTTCTATAGTAATTTTATGCA
GTGCAATATATTTTGAATGTCTTACCAACTTTGAGAAATATCTAGTATTC
ATGCAAAATATGTAATTGATAAGTTTACAAttaagtgaacaaaaaagtaa
aatcaacacagtttgtttgcgatatttcgttctattttcagaacttcatc
aGGTATGATACTGCACAAGCGTTAACACATTTTTAAATGCTACAAAATCA
GTGATGCGTAAATCAAAAgcgagaaataaaaaattctaatgAACAAAGGA
AAAATAATTCTATAGGGAATAAAacaaagaacatgttaaaaagaTTTCAT
AAAAATAGGTGCGTAGCGATAATATTTACAACGTTAAAACAGTAcaataa
aattgatgaaaacaaCCCCGTGGGGAATAATCGTCGAACacaataaaact
aaaaatttaacgAAAAAGGTTTCGAATTAGNTTAGCACAGTAAACGCAGT
GGAAATTAAAACGGAAAATTAAATGCTCGTGTCCCCTTCTGGTTTATTCA
GgacaaaaagcaaaacaaaaagaaattacgGAACAAAATATGGGAACACC
TGATACTAGTAGAGCACACAACTGTGCTGTAGGCATGTTTACAAGTTTAC
AATtatatactcttaggtgccaaataaacagagggttggaaaaattgttc
aaattttaataaaaggaGGGACCTAATCGCCGGGGAGTTGGAAATTATAC
ATCAAAATTAGGGAGCTTCCCTTTGacagttgaaaatatttcaaaaatta
ataaacagggggtctTATAAGGTCCGGcgggttggaaaaaatcgaaaaat
taacaaacatggggggggcgtttatttggcacctcaGAGTATGTCTTACA
GAAGCTTTAGTGTTCAGTGATTatgtatatttttctttttagcttttGAA
GCAGAAGGGATACGTCTCGtcgaaaaatctttgaaatgtGTAAAGAGTGA
TAAAGACCTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022227-exon-sc0000408-1491911889:292016..292064 | TCONS_00022227-exon-sc0000408-1491911889:292016..292064 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1510915933:292016..292064 | TCONS_00022227-exon-sc0000408-1510915933:292016..292064 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1575043694:292016..292064 | TCONS_00022227-exon-sc0000408-1575043694:292016..292064 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1491911889:292408..292485 | TCONS_00022227-exon-sc0000408-1491911889:292408..292485 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1510915933:292408..292485 | TCONS_00022227-exon-sc0000408-1510915933:292408..292485 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1575043694:292408..292485 | TCONS_00022227-exon-sc0000408-1575043694:292408..292485 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1491911889:293658..293729 | TCONS_00022227-exon-sc0000408-1491911889:293658..293729 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1510915933:293658..293729 | TCONS_00022227-exon-sc0000408-1510915933:293658..293729 | Clytia hemisphaerica | exon |
| TCONS_00022227-exon-sc0000408-1575043694:293658..293729 | TCONS_00022227-exon-sc0000408-1575043694:293658..293729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000408 | supercontig | sc0000408:292016..293729 + |
Blast
The following BLAST results are available for this feature:
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