TCONS_00022220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022220
Unique NameTCONS_00022220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022220 ID=TCONS_00022220|Name=TCONS_00022220|organism=Clytia hemisphaerica|type=transcript|length=1990bp
ACTTAagtcatgaaaaaaatttttttttcataacgaAATTTTTATTAACG
AAGATTTGATGTCATAGAAGAATCATATTAATATTTAAGAGAGGACGACA
CAAGACGAACACGAGACTAACTCCAAAAAGGCAAGGTTGTATAATTCAAC
AACACAGAATTCATCTAACCAACTCATAACAAATTCAACTACCACAACAG
CAGCAAGAAAAATGAATGTTCCAGACGAGCTCACCGCTACAGAATACTTG
AATCAGCTATTGCAAGACAAAACTACTGTCTCAAAAATGCCGAAGATCTT
TTTGCATTCTGAAAGACTTCTAGATGAAGaaattagTCGTGTACGAAATG
ACATATTTTGCCCGTCAAGCTTCTTGATGTCACTGCCAAAACCCTCTGGA
CCTCCTGTGAAGTTAACTGAAAAAGTTTATGCAAAAGTCAAAGATCACCC
TAAATTCAACTTTGTTGGTCGTATTATTGGTCCACGTGGTCTCACCTTAC
GTCAAGTTGAGCAAGAAACAGGAGGGAAGCTTCTTGTTAGAGGAAGAGGT
TCAATGAAAGACAAGAAAGTGGAGGAAGAAAAACGTGGACAACCAAACTA
TGAGCATTTGGATGAGGATCTTCATGTTTTGATAATGGTTGAAGATACTG
AAGATCGTGCTcgaatgaaattgaaaaaagctgTTGAAGAAGTTAACTTC
CTCCTTACACCTCCAAAAGACGGAGAAGATGCGATAAAAAAGAAGCAACT
TCAGGATCTTGCAATTTTAAATGGTACTTACAGACACCCCAACAGTGAGG
CAAGCCCTCCTGCTGCTGCCACAGTCACTCAAAATGGTGtatCTCCAACT
GGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTCCACAAAACAATAC
ATCATTTCCAGCCATCCGAAACTCAGCAGCTGCACTGCAAGGCTTATATC
CTCTTGAAACTTTCGCTCAAAGAGGCACACCGGGTGCTTCGTTTCTGGAT
TTTACCAATCTGGATGGCAGCTCGCTAATTTTGAGTAAAAGATGATAATT
CATTCCAAACCGGCTGTAACAACTACtgtccaaaaatttaaaaactgttt
tgttgtgatttggtttatgtttttttattgcGATATtcgcaaaataaatt
tcaaattaaatttttgtaaatccAATTTTATTGTATGATAATTTTATACG
TTTGAAGTTTAGTTCAAGATTAATCTTGATACTAATTTTAACTTATATTT
AATATAAATAACACATAAACGCTATTTTTACTAACTATTTACTTTTTTAC
catttaataataataaaatactcAAATTGTGTCTTTTTTAACGACGTTTA
AAATGATAAATTGGAAAACTTGTATTTACTATTTATTCtgcaatttttat
attttttaaactaactttcattattttgttattttttgaaagCAATCTTG
AGGAAACTGCATACATTTTAGGGCAAGAAGGGTTCAACACTTACagtaca
ttacattacattctTTATGCAAGTTTCAGAAATCCcttgccttaaaaaat
cttgaatttttccTGTGGATagtattatttttaaaaaacagaTTTCTCTG
AATAATGTAGTAGAACTtactattttcatttcaataatattttatttgac
GCTCAAAAGTAAAGAATTTTATAGAAATATGAAGAAGTTtatgaatttga
taaaaaacaaaaattctaaCAACTCATGCTAAGAAAGGTCATGACATTTC
AACATGGAACCGACCATGAAATGCTActaataacaacaacaacagaaatG
TATTGACCCAGAATAAACCCTGCTAACATCACGACTACTTATGTCATCCA
ACCAATCAACTGAAGAGAGAATTATTACAGAAAACTGagcaattttatta
ttttatatgaAGATACTTTTaggtatttatttatttagcatAGATTATGT
gaagagaaataaagaaaaaatgaattttaaaatatttttg
Run BLAST on NCBI

transcript from alignment at sc0000408:180092..184078+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022220 ID=TCONS_00022220|Name=TCONS_00022220|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at sc0000408:180092..184078+ (Clytia hemisphaerica)
ACTTAagtcatgaaaaaaatttttttttcataacgaAATTTTTATTAACG
AAGATTTGATGTCATAGAAGAATCATATTAATATTTAAGAGAGGcaagaa
agaaatatttttgtatgcGCTGACCCCCGTCTCAAATCAGTGTTCTTCTA
CTAACAAATCAAGCTGGCGAGAATTTCTGATCACTCACAAAATACCTTGC
CTCTTGACAGGACGACACAAGACGAACACGAGACTAACTCCAAAAAGGCA
AGGTTGTATAATTCAACAACACAGAATTCATCTAACCAACTCATAACAAA
TTCAACTACCACAACAGCAGCAAGAAAAATGAATGTTCCAGACGAGCTCA
CCGCTACAGAATACTTGAATCAGCTATTGCAAGACAAAACTACTGTCTCA
AAAATGCCGAAGATCTTTTTGCATTCTGAAAGACTTCTAGATGAAGGTGA
GTTAGCTGTGATTACTCTTTTGATTCTAgtaaaaccttttgaaaaatgtC
CCTGACAAAATGCCCATTGTCTAAGAAAGCTGATTAAAATCAATCTCTTT
TTCGACAGACAACTTCCTTAAGGTTATTTAATTAATTTTGTAGTAAGAGG
TTTACCATAATGACGTAGAAATTACATCTCTCTGCATACTGCAAGCATGT
TTTTGTCAGCAGCTTGATTAAAAATGTCTGTTTTGACTTTTGATTTATAT
TagatatcaatgttttgattcaatttttcaatattcaTAACATTGTTTGT
agtttttgtaataaaaatttgaatatttcttaGAAGAGCTACATGTTATA
TCCTGATTTTGTTCGATTTGGGTTATTTCCTTTTACTATCACTTATTATT
GATACACaccttttttatagaaattagTCGTGTACGAAATGACATATTTT
GCCCGTCAAGCTTCTTGATGTCACTGCCAAAACCCTCTGGACCTCCTGTG
AAGTTAACTGAAAAAGTTTATGCAAAAGTCAAAGATCACCCTAAAGTAAG
TAAATATTGTAGTGTTTCATTGTGCCAGTTCTAATATTGATCAGGCCCCA
TTTCAAATACCCCTGTTGAAGTGGGTTGAAATTAACATATGAAATTTCTT
TCCGGCCATTATGGAACACGTGGTGAAGGAGTGAGTGCTCTTGAGAAAAT
GTAAGTCACCATTGACGGCCTAAATAAAGTGATGTGAGTAAAATTGAGCT
TTTCAAATGCTAGAAATAGTTGTTGCCCAACTCTGTTGTTTCAGATATTG
TCTGAAAATACTTTTCCCATGTAAATTGCTAAAAATTTCCCCGGAAAAGT
CGATTGTGCGCTGTAGAGGGATTAATCATCAAAATTCTATTCACACTGAT
AGTGATAACATAGCCTTTCATAATATAGCCTTTCATAATTCAGATTACTT
CTGCAAGAACTGTTAGCGGTAAAATAATGATCAGTCCGAATTCTTAAAAG
GCAGGGTTGCGTCCCCTAAGCTTTATCCAGGCTAATTTTTTGGATATGAA
TGTAACATTTCTTTATTCtataaatttcatgttttattttaAGTTCAACT
TTGTTGGTCGTATTATTGGTCCACGTGGTCTCACCTTACGTCAAGTTGAG
CAAGAAACAGGAGGGAAGCTTCTTGTTAGAGGAAGAGGTTCAATGAAAGA
CAAGAAAGTGGAGGAAGAAAAACGTGGACAACCAAACTATGAGCATTTGG
ATGAGGATCTTCATGTTTTGATAATGGTTGAAGATACTGAAGATCGTGCT
cgaatgaaattgaaaaaagctgTTGAAGAAGTTAACTTCCTCCTTACACC
TCCAgtaagaaaattatgtttttgaatttGGAATCATTATATACCAAACA
AATCTCAAGTGCTCTAAAATTCTTTGCATATAAGTTGATATGCATTCAGC
AACTTTGTTTATGTGTTTTACAGGCAGTACAGGGTATTTGAGTAAGGGAG
CTCAATTTTGTTTTCCTCATAATTTCAGAAAGACGGAGAAGATGCGATAA
AAAAGAAGCAACTTCAGGATCTTGCAATTTTAAATGGTACTTACAGACAC
CCCAACAGTGAGGCAAGCCCTCCTGCTGCTGCCACAGTCACTCAAAATGG
TGGTAAGCAatgttttcaattattttgaagttaatatgataattatgaaa
aatcaaACCCCAAGCAGATCAGGCTATTTTTGTTTCCTCTTCTGACCTGG
taagatgttttgtttttaccCAGAACTCCTTTTTATCCGGGTGGAACATT
TTGAATAAGAGGATAagtttttactttaaaattttgaaaatttttctttc
agtatCTCCAACTGGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTC
CACAAAACAATACATCATTTCCAGCCATCCGAAACTCAGCAGGTGAGCCT
GTTCATTACGACAAcatgattttccgattttgtgATTTCGGTATAAATCC
AACAGTGCCTACACAACAACATCCATCTTCGCGATCGTTCGGTTGTTGCT
CTCCAACTGTGTTTTAAGGAATCTTTTTGTGCAATGTGTTACATCAGGGT
GgactttttgagtttggttttcaaatttgaaatttaattatGTGTGGTGT
ATTAAACCTAAACTTCAAAGTTTGCTACTAATCACTAGaacttttttaac
attttggtaATTTGAATGGTGCATTATAAATGTCAATAAGAATTTATGAA
GGGATAACTAATAATTTATTGCAATAACCAAAATTAACTCTAAATTATAA
AATCAGCATAACATTTTTGAGTTCTTAACAAAACTAAAGACATTAGTTGT
ATATAGTTGGACTGGACCTTATCAACTTTTGTGGAACCTCCAATAAAACT
AAAAAGCTACTGACCATAATGTTAAACAACTTTACCAAATAAAACTATTT
GTCTGAATCTAATTTGATTTCAGCAGCTGCACTGCAAGGCTTATATCCTC
TTGAAACTTTCGCTCAAAGAGGCACACCGGGTGCTTCGTTTCTGGATTTT
ACCAATCTGGATGGCAGCTCGCTAATTTTGAGTAAAAGATGATAATTCAT
TCCAAACCGGCTGTAACAACTACtgtccaaaaatttaaaaactgttttgt
tgtgatttggtttatgtttttttattgcGATATtcgcaaaataaatttca
aattaaatttttgtaaatccAATTTTATTGTATGATAATTTTATACGTTT
GAAGTTTAGTTCAAGATTAATCTTGATACTAATTTTAACTTATATTTAAT
ATAAATAACACATAAACGCTATTTTTACTAACTATTTACTTTTTTACcat
ttaataataataaaatactcAAATTGTGTCTTTTTTAACGACGTTTAAAA
TGATAAATTGGAAAACTTGTATTTACTATTTATTCtgcaatttttatatt
ttttaaactaactttcattattttgttattttttgaaagCAATCTTGAGG
AAACTGCATACATTTTAGGGCAAGAAGGGTTCAACACTTACagtacatta
cattacattctTTATGCAAGTTTCAGAAATCCcttgccttaaaaaatctt
gaatttttccTGTGGATagtattatttttaaaaaacagaTTTCTCTGAAT
AATGTAGTAGAACTtactattttcatttcaataatattttatttgacGCT
CAAAAGTAAAGAATTTTATAGAAATATGAAGAAGTTtatgaatttgataa
aaaacaaaaattctaaCAACTCATGCTAAGAAAGGTCATGACATTTCAAC
ATGGAACCGACCATGAAATGCTActaataacaacaacaacagaaatGTAT
TGACCCAGAATAAACCCTGCTAACATCACGACTACTTATGTCATCCAACC
AATCAACTGAAGAGAGAATTATTACAGAAAACTGagcaattttattattt
tatatgaAGATACTTTTaggtatttatttatttagcatAGATTATGTgaa
gagaaataaagaaaaaatgaattttaaaatatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012455XLOC_012455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022220-exon-sc0000408-1491911889:180092..180184TCONS_00022220-exon-sc0000408-1491911889:180092..180184Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:180092..180184TCONS_00022220-exon-sc0000408-1510915933:180092..180184Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:180092..180184TCONS_00022220-exon-sc0000408-1575043694:180092..180184Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1491911889:180302..180537TCONS_00022220-exon-sc0000408-1491911889:180302..180537Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:180302..180537TCONS_00022220-exon-sc0000408-1510915933:180302..180537Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:180302..180537TCONS_00022220-exon-sc0000408-1575043694:180302..180537Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1491911889:180962..181086TCONS_00022220-exon-sc0000408-1491911889:180962..181086Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:180962..181086TCONS_00022220-exon-sc0000408-1510915933:180962..181086Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:180962..181086TCONS_00022220-exon-sc0000408-1575043694:180962..181086Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1491911889:181635..181895TCONS_00022220-exon-sc0000408-1491911889:181635..181895Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:181635..181895TCONS_00022220-exon-sc0000408-1510915933:181635..181895Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:181635..181895TCONS_00022220-exon-sc0000408-1575043694:181635..181895Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1491911889:182070..182193TCONS_00022220-exon-sc0000408-1491911889:182070..182193Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:182070..182193TCONS_00022220-exon-sc0000408-1510915933:182070..182193Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:182070..182193TCONS_00022220-exon-sc0000408-1575043694:182070..182193Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1491911889:182394..182483TCONS_00022220-exon-sc0000408-1491911889:182394..182483Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:182394..182483TCONS_00022220-exon-sc0000408-1510915933:182394..182483Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:182394..182483TCONS_00022220-exon-sc0000408-1575043694:182394..182483Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1491911889:183018..184078TCONS_00022220-exon-sc0000408-1491911889:183018..184078Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1510915933:183018..184078TCONS_00022220-exon-sc0000408-1510915933:183018..184078Clytia hemisphaericaexon
TCONS_00022220-exon-sc0000408-1575043694:183018..184078TCONS_00022220-exon-sc0000408-1575043694:183018..184078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:180092..184078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.413084	0.10033	0.00435343	0	0	5.95087e-09	0	9.82582	14.3378	5.06575	2.11559	0.962773	1.67318	2.93509	4.1735	7.20975	4.53529	2.63381	3.99725	0.746195	0.178684	6.52128	4.03826	0	0	0.684426	0	3.59808	2.09381
Blast
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BLAST of TCONS_00022220 vs. Swiss-Prot (Human)
Match: QKI (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.007e-66
Identity = 113/193 (58.55%), Postives = 142/193 (73.58%), Query Frame = 2 
Query:  242 EYLNQLLQDKTTVSKMPK---IFLHSERLLDEEISRVRNDIF------CPSSFLMSLPKPSGPPVKLTEKVYAKVKDHPKFNFVGRIIGPRGLTLRQVEQETGGKLLVRGRGSMKDKKVEEEKRGQPNYEHLDEDLHVLIMVEDTEDRARMKLKKAVEEVNFLLTPPKDGEDAIKKKQLQDLAILNGTYRHPN 793
            +YL QL+ DK  +S +P    IF H ERLLDEEISRVR D++              LP   GP V+L EK+Y  VK++P FNFVGRI+GPRGLT +Q+E ETG K++VRG+GSM+DKK EE+ RG+PN+EHL+EDLHVLI VED ++RA +KLK+AVEEV  LL P  +GED++KK QL +LAILNGTYR  N
Sbjct:   16 DYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDAN 208
The following BLAST results are available for this feature:
BLAST of TCONS_00022220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QKI2.007e-6658.55Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
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