TCONS_00022218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022218
Unique NameTCONS_00022218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022218 ID=TCONS_00022218|Name=TCONS_00022218|organism=Clytia hemisphaerica|type=transcript|length=2470bp
CTTCACAACAATTTAACTGCAAGTTAAACAGTTCAAAAAGACGACACAAG
ACGAACACGAGACTAACTCCAAAAAGGCAAGGTTGTATAATTCAACAACA
CAGAATTCATCTAACCAACTCATAACAAATTCAACTACCACAACAGCAGC
AAGAAAAATGAATGTTCCAGACGAGCTCACCGCTACAGAATACTTGAATC
AGCTATTGCAAGACAAAACTACTGTCTCAAAAATGCCGAAGATCTTTTTG
CATTCTGAAAGACTTCTAGATGAAGaaattagTCGTGTACGAAATGACAT
ATTTTGCCCGTCAAGCTTCTTGATGTCACTGCCAAAACCCTCTGGACCTC
CTGTGAAGTTAACTGAAAAAGTTTATGCAAAAGTCAAAGATCACCCTAAA
TTCAACTTTGTTGGTCGTATTATTGGTCCACGTGGTCTCACCTTACGTCA
AGTTGAGCAAGAAACAGGAGGGAAGCTTCTTGTTAGAGGAAGAGGTTCAA
TGAAAGACAAGAAAGTGGAGGAAGAAAAACGTGGACAACCAAACTATGAG
CATTTGGATGAGGATCTTCATGTTTTGATAATGGTTGAAGATACTGAAGA
TCGTGCTcgaatgaaattgaaaaaagctgTTGAAGAAGTTAACTTCCTCC
TTACACCTCCAAAAGACGGAGAAGATGCGATAAAAAAGAAGCAACTTCAG
GATCTTGCAATTTTAAATGGTACTTACAGACACCCCAACAGTGAGGCAAG
CCCTCCTGCTGCTGCCACAGTCACTCAAAATGGTGtatCTCCAACTGGGC
TGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTCCACAAAACAATACATCA
TTTCCAGCCATCCGAAACTCAGCAGGTGAGCCTGTTCATTACGACAAcat
gattttccgattttgtgATTTCGGTATAAATCCAACAGTGCCTACACAAC
AACATCCATCTTCGCGATCGTTCGGTTGTTGCTCTCCAACTGTGTTTTAA
GGAATCTTTTTGTGCAATGTGTTACATCAGGGTGgactttttgagtttgg
ttttcaaatttgaaatttaattatGTGTGGTGTATTAAACCTAAACTTCA
AAGTTTGCTACTAATCACTAGaacttttttaacattttggtaATTTGAAT
GGTGCATTATAAATGTCAATAAGAATTTATGAAGGGATAACTAATAATTT
ATTGCAATAACCAAAATTAACTCTAAATTATAAAATCAGCATAACATTTT
TGAGTTCTTAACAAAACTAAAGACATTAGTTGTATATAGTTGGACTGGAC
CTTATCAACTTTTGTGGAACCTCCAATAAAACTAAAAAGCTACTGACCAT
AATGTTAAACAACTTTACCAAATAAAACTATTTGTCTGAATCTAATTTGA
TTTCAGCAGCTGCACTGCAAGGCTTATATCCTCTTGAAACTTTCGCTCAA
AGAGGCACACCGGGTGCTTCGTTTCTGGATTTTACCAATCTGGATGGCAG
CTCGCTAATTTTGAGTAAAAGATGATAATTCATTCCAAACCGGCTGTAAC
AACTACtgtccaaaaatttaaaaactgttttgttgtgatttggtttatgt
ttttttattgcGATATtcgcaaaataaatttcaaattaaatttttgtaaa
tccAATTTTATTGTATGATAATTTTATACGTTTGAAGTTTAGTTCAAGAT
TAATCTTGATACTAATTTTAACTTATATTTAATATAAATAACACATAAAC
GCTATTTTTACTAACTATTTACTTTTTTACcatttaataataataaaata
ctcAAATTGTGTCTTTTTTAACGACGTTTAAAATGATAAATTGGAAAACT
TGTATTTACTATTTATTCtgcaatttttatattttttaaactaactttca
ttattttgttattttttgaaagCAATCTTGAGGAAACTGCATACATTTTA
GGGCAAGAAGGGTTCAACACTTACagtacattacattacattctTTATGC
AAGTTTCAGAAATCCcttgccttaaaaaatcttgaatttttccTGTGGAT
agtattatttttaaaaaacagaTTTCTCTGAATAATGTAGTAGAACTtac
tattttcatttcaataatattttatttgacGCTCAAAAGTAAAGAATTTT
ATAGAAATATGAAGAAGTTtatgaatttgataaaaaacaaaaattctaaC
AACTCATGCTAAGAAAGGTCATGACATTTCAACATGGAACCGACCATGAA
ATGCTActaataacaacaacaacagaaatGTATTGACCCAGAATAAACCC
TGCTAACATCACGACTACTTATGTCATCCAACCAATCAACTGAAGAGAGA
ATTATTACAGAAAACTGagcaattttattattttatatgaAGATACTTTT
aggtatttatttatttagcatAGATTATGTgaagagaaataaagaaaaaa
tgaattttaaaatatttttg
Run BLAST on NCBI

transcript from alignment at sc0000408:179446..184078+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022218 ID=TCONS_00022218|Name=TCONS_00022218|organism=Clytia hemisphaerica|type=transcript|length=4633bp|location=Sequence derived from alignment at sc0000408:179446..184078+ (Clytia hemisphaerica)
CTTCACAACAATTTAACTGCAAGTTAAACAGTTCAAAAAGTAAGTaatct
tgaaaattaaaattaaattttagcgACAGAACATGCTTTTTCTGTTTTCG
GGACCATTCATGGGTACGGTACTCGACAGCACTGATGATATCGTCATCTC
AACCTATCTCAACCGTGGAATTTAGGTACTAGCATATAATAAAAGGGTGT
TAGCAGGTACATACAGAATCACCAGGGAGGCGTGTCACTTACAATCACTC
ACTTCACGCAAGACAGCTCGCTTCCACGCGCGTGTATAATAAAGACCAGA
AAAAGTAAGCGACCGCAAAATCATGTTGTGTTACGACTTGCGAATTTGca
tttcgcaaaaaaaaaaacacgttttttgGTGAGGATCTAAATCTTATTAG
AGGAGAAATTCCTTTTCCAATATATTTGTGCTTAGGATTGACTCTTTATT
gtatctttttctcaaaaaaatcacaatgtTTTCTCTCGAGTTTTATTAGT
GCGGatgtttgatatttttctttctgttaaACTTTTTATTTACGAAGCGA
CGGGGAGCTTTGTTTTTCCAGCCTCGAGTTGGTGAGTTTCGCGCTTTTCA
GGGGTTTAGAATACAACAAGAAATGACCTCTTTTGTTTCGTTTAGTACTT
AagtcatgaaaaaaatttttttttcataacgaAATTTTTATTAACGAAGA
TTTGATGTCATAGAAGAATCATATTAATATTTAAGAGAGGcaagaaagaa
atatttttgtatgcGCTGACCCCCGTCTCAAATCAGTGTTCTTCTACTAA
CAAATCAAGCTGGCGAGAATTTCTGATCACTCACAAAATACCTTGCCTCT
TGACAGGACGACACAAGACGAACACGAGACTAACTCCAAAAAGGCAAGGT
TGTATAATTCAACAACACAGAATTCATCTAACCAACTCATAACAAATTCA
ACTACCACAACAGCAGCAAGAAAAATGAATGTTCCAGACGAGCTCACCGC
TACAGAATACTTGAATCAGCTATTGCAAGACAAAACTACTGTCTCAAAAA
TGCCGAAGATCTTTTTGCATTCTGAAAGACTTCTAGATGAAGGTGAGTTA
GCTGTGATTACTCTTTTGATTCTAgtaaaaccttttgaaaaatgtCCCTG
ACAAAATGCCCATTGTCTAAGAAAGCTGATTAAAATCAATCTCTTTTTCG
ACAGACAACTTCCTTAAGGTTATTTAATTAATTTTGTAGTAAGAGGTTTA
CCATAATGACGTAGAAATTACATCTCTCTGCATACTGCAAGCATGTTTTT
GTCAGCAGCTTGATTAAAAATGTCTGTTTTGACTTTTGATTTATATTaga
tatcaatgttttgattcaatttttcaatattcaTAACATTGTTTGTagtt
tttgtaataaaaatttgaatatttcttaGAAGAGCTACATGTTATATCCT
GATTTTGTTCGATTTGGGTTATTTCCTTTTACTATCACTTATTATTGATA
CACaccttttttatagaaattagTCGTGTACGAAATGACATATTTTGCCC
GTCAAGCTTCTTGATGTCACTGCCAAAACCCTCTGGACCTCCTGTGAAGT
TAACTGAAAAAGTTTATGCAAAAGTCAAAGATCACCCTAAAGTAAGTAAA
TATTGTAGTGTTTCATTGTGCCAGTTCTAATATTGATCAGGCCCCATTTC
AAATACCCCTGTTGAAGTGGGTTGAAATTAACATATGAAATTTCTTTCCG
GCCATTATGGAACACGTGGTGAAGGAGTGAGTGCTCTTGAGAAAATGTAA
GTCACCATTGACGGCCTAAATAAAGTGATGTGAGTAAAATTGAGCTTTTC
AAATGCTAGAAATAGTTGTTGCCCAACTCTGTTGTTTCAGATATTGTCTG
AAAATACTTTTCCCATGTAAATTGCTAAAAATTTCCCCGGAAAAGTCGAT
TGTGCGCTGTAGAGGGATTAATCATCAAAATTCTATTCACACTGATAGTG
ATAACATAGCCTTTCATAATATAGCCTTTCATAATTCAGATTACTTCTGC
AAGAACTGTTAGCGGTAAAATAATGATCAGTCCGAATTCTTAAAAGGCAG
GGTTGCGTCCCCTAAGCTTTATCCAGGCTAATTTTTTGGATATGAATGTA
ACATTTCTTTATTCtataaatttcatgttttattttaAGTTCAACTTTGT
TGGTCGTATTATTGGTCCACGTGGTCTCACCTTACGTCAAGTTGAGCAAG
AAACAGGAGGGAAGCTTCTTGTTAGAGGAAGAGGTTCAATGAAAGACAAG
AAAGTGGAGGAAGAAAAACGTGGACAACCAAACTATGAGCATTTGGATGA
GGATCTTCATGTTTTGATAATGGTTGAAGATACTGAAGATCGTGCTcgaa
tgaaattgaaaaaagctgTTGAAGAAGTTAACTTCCTCCTTACACCTCCA
gtaagaaaattatgtttttgaatttGGAATCATTATATACCAAACAAATC
TCAAGTGCTCTAAAATTCTTTGCATATAAGTTGATATGCATTCAGCAACT
TTGTTTATGTGTTTTACAGGCAGTACAGGGTATTTGAGTAAGGGAGCTCA
ATTTTGTTTTCCTCATAATTTCAGAAAGACGGAGAAGATGCGATAAAAAA
GAAGCAACTTCAGGATCTTGCAATTTTAAATGGTACTTACAGACACCCCA
ACAGTGAGGCAAGCCCTCCTGCTGCTGCCACAGTCACTCAAAATGGTGGT
AAGCAatgttttcaattattttgaagttaatatgataattatgaaaaatc
aaACCCCAAGCAGATCAGGCTATTTTTGTTTCCTCTTCTGACCTGGtaag
atgttttgtttttaccCAGAACTCCTTTTTATCCGGGTGGAACATTTTGA
ATAAGAGGATAagtttttactttaaaattttgaaaatttttctttcagta
tCTCCAACTGGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTCCACA
AAACAATACATCATTTCCAGCCATCCGAAACTCAGCAGGTGAGCCTGTTC
ATTACGACAAcatgattttccgattttgtgATTTCGGTATAAATCCAACA
GTGCCTACACAACAACATCCATCTTCGCGATCGTTCGGTTGTTGCTCTCC
AACTGTGTTTTAAGGAATCTTTTTGTGCAATGTGTTACATCAGGGTGgac
tttttgagtttggttttcaaatttgaaatttaattatGTGTGGTGTATTA
AACCTAAACTTCAAAGTTTGCTACTAATCACTAGaacttttttaacattt
tggtaATTTGAATGGTGCATTATAAATGTCAATAAGAATTTATGAAGGGA
TAACTAATAATTTATTGCAATAACCAAAATTAACTCTAAATTATAAAATC
AGCATAACATTTTTGAGTTCTTAACAAAACTAAAGACATTAGTTGTATAT
AGTTGGACTGGACCTTATCAACTTTTGTGGAACCTCCAATAAAACTAAAA
AGCTACTGACCATAATGTTAAACAACTTTACCAAATAAAACTATTTGTCT
GAATCTAATTTGATTTCAGCAGCTGCACTGCAAGGCTTATATCCTCTTGA
AACTTTCGCTCAAAGAGGCACACCGGGTGCTTCGTTTCTGGATTTTACCA
ATCTGGATGGCAGCTCGCTAATTTTGAGTAAAAGATGATAATTCATTCCA
AACCGGCTGTAACAACTACtgtccaaaaatttaaaaactgttttgttgtg
atttggtttatgtttttttattgcGATATtcgcaaaataaatttcaaatt
aaatttttgtaaatccAATTTTATTGTATGATAATTTTATACGTTTGAAG
TTTAGTTCAAGATTAATCTTGATACTAATTTTAACTTATATTTAATATAA
ATAACACATAAACGCTATTTTTACTAACTATTTACTTTTTTACcatttaa
taataataaaatactcAAATTGTGTCTTTTTTAACGACGTTTAAAATGAT
AAATTGGAAAACTTGTATTTACTATTTATTCtgcaatttttatatttttt
aaactaactttcattattttgttattttttgaaagCAATCTTGAGGAAAC
TGCATACATTTTAGGGCAAGAAGGGTTCAACACTTACagtacattacatt
acattctTTATGCAAGTTTCAGAAATCCcttgccttaaaaaatcttgaat
ttttccTGTGGATagtattatttttaaaaaacagaTTTCTCTGAATAATG
TAGTAGAACTtactattttcatttcaataatattttatttgacGCTCAAA
AGTAAAGAATTTTATAGAAATATGAAGAAGTTtatgaatttgataaaaaa
caaaaattctaaCAACTCATGCTAAGAAAGGTCATGACATTTCAACATGG
AACCGACCATGAAATGCTActaataacaacaacaacagaaatGTATTGAC
CCAGAATAAACCCTGCTAACATCACGACTACTTATGTCATCCAACCAATC
AACTGAAGAGAGAATTATTACAGAAAACTGagcaattttattattttata
tgaAGATACTTTTaggtatttatttatttagcatAGATTATGTgaagaga
aataaagaaaaaatgaattttaaaatatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012455XLOC_012455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022218-exon-sc0000408-1491911889:179446..179484TCONS_00022218-exon-sc0000408-1491911889:179446..179484Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1510915933:179446..179484TCONS_00022218-exon-sc0000408-1510915933:179446..179484Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1575043694:179446..179484TCONS_00022218-exon-sc0000408-1575043694:179446..179484Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1491911889:180302..180537TCONS_00022218-exon-sc0000408-1491911889:180302..180537Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1510915933:180302..180537TCONS_00022218-exon-sc0000408-1510915933:180302..180537Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1575043694:180302..180537TCONS_00022218-exon-sc0000408-1575043694:180302..180537Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1491911889:180962..181086TCONS_00022218-exon-sc0000408-1491911889:180962..181086Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1510915933:180962..181086TCONS_00022218-exon-sc0000408-1510915933:180962..181086Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1575043694:180962..181086TCONS_00022218-exon-sc0000408-1575043694:180962..181086Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1491911889:181635..181895TCONS_00022218-exon-sc0000408-1491911889:181635..181895Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1510915933:181635..181895TCONS_00022218-exon-sc0000408-1510915933:181635..181895Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1575043694:181635..181895TCONS_00022218-exon-sc0000408-1575043694:181635..181895Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1491911889:182070..182193TCONS_00022218-exon-sc0000408-1491911889:182070..182193Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1510915933:182070..182193TCONS_00022218-exon-sc0000408-1510915933:182070..182193Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1575043694:182070..182193TCONS_00022218-exon-sc0000408-1575043694:182070..182193Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1491911889:182394..184078TCONS_00022218-exon-sc0000408-1491911889:182394..184078Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1510915933:182394..184078TCONS_00022218-exon-sc0000408-1510915933:182394..184078Clytia hemisphaericaexon
TCONS_00022218-exon-sc0000408-1575043694:182394..184078TCONS_00022218-exon-sc0000408-1575043694:182394..184078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:179446..184078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.14072e-07	0.63621	0.00307658	1.22452e-07	0.221388	0.322975	0.461275	0.77069	1.48742e-09	8.60444e-08	0.00739017	0.774142	1.48969	1.6193e-06	2.85195e-07	0	0	3.09375e-08	1.04441	0	0	0	0.0307952	0.000178561	1.24458e-09	1.73964e-10
Blast
[Close]
BLAST of TCONS_00022218 vs. Swiss-Prot (Human)
Match: QKI (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.535e-65
Identity = 113/193 (58.55%), Postives = 142/193 (73.58%), Query Frame = 2 
Query:  188 EYLNQLLQDKTTVSKMPK---IFLHSERLLDEEISRVRNDIF------CPSSFLMSLPKPSGPPVKLTEKVYAKVKDHPKFNFVGRIIGPRGLTLRQVEQETGGKLLVRGRGSMKDKKVEEEKRGQPNYEHLDEDLHVLIMVEDTEDRARMKLKKAVEEVNFLLTPPKDGEDAIKKKQLQDLAILNGTYRHPN 739
            +YL QL+ DK  +S +P    IF H ERLLDEEISRVR D++              LP   GP V+L EK+Y  VK++P FNFVGRI+GPRGLT +Q+E ETG K++VRG+GSM+DKK EE+ RG+PN+EHL+EDLHVLI VED ++RA +KLK+AVEEV  LL P  +GED++KK QL +LAILNGTYR  N
Sbjct:   16 DYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDAN 208
The following BLAST results are available for this feature:
BLAST of TCONS_00022218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QKI2.535e-6558.55Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
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