TCONS_00022215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022215
Unique NameTCONS_00022215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022215 ID=TCONS_00022215|Name=TCONS_00022215|organism=Clytia hemisphaerica|type=transcript|length=2057bp
TTTAGAAGGAACTAGCAATCTACTGCTTTACTACTATAATAGACCATCGT
ATTTTACCGACTAAATTTTTGATAACAAATACAATCAAGCAAGATTCAAG
AAGAAGTCCTCTATTTGCTTGGTATTGATATTACAGGGGAATctgtattc
aatttttcacGACGACACAAGACGAACACGAGACTAACTCCAAAAAGGCA
AGGTTGTATAATTCAACAACACAGAATTCATCTAACCAACTCATAACAAA
TTCAACTACCACAACAGCAGCAAGAAAAATGAATGTTCCAGACGAGCTCA
CCGCTACAGAATACTTGAATCAGCTATTGCAAGACAAAACTACTGTCTCA
AAAATGCCGAAGATCTTTTTGCATTCTGAAAGACTTCTAGATGAAGaaat
tagTCGTGTACGAAATGACATATTTTGCCCGTCAAGCTTCTTGATGTCAC
TGCCAAAACCCTCTGGACCTCCTGTGAAGTTAACTGAAAAAGTTTATGCA
AAAGTCAAAGATCACCCTAAATTCAACTTTGTTGGTCGTATTATTGGTCC
ACGTGGTCTCACCTTACGTCAAGTTGAGCAAGAAACAGGAGGGAAGCTTC
TTGTTAGAGGAAGAGGTTCAATGAAAGACAAGAAAGTGGAGGAAGAAAAA
CGTGGACAACCAAACTATGAGCATTTGGATGAGGATCTTCATGTTTTGAT
AATGGTTGAAGATACTGAAGATCGTGCTcgaatgaaattgaaaaaagctg
TTGAAGAAGTTAACTTCCTCCTTACACCTCCAAAAGACGGAGAAGATGCG
ATAAAAAAGAAGCAACTTCAGGATCTTGCAATTTTAAATGGTACTTACAG
ACACCCCAACAGTGAGGCAAGCCCTCCTGCTGCTGCCACAGTCACTCAAA
ATGGTGtatCTCCAACTGGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTC
GTTCCACAAAACAATACATCATTTCCAGCCATCCGAAACTCAGCAGCTGC
ACTGCAAGGCTTATATCCTCTTGAAACTTTCGCTCAAAGAGGCACACCGG
GTGCTTCGTTTCTGGATTTTACCAATCTGGATGGCAGCTCGCTAATTTTG
AGTAAAAGATGATAATTCATTCCAAACCGGCTGTAACAACTACtgtccaa
aaatttaaaaactgttttgttgtgatttggtttatgtttttttattgcGA
TATtcgcaaaataaatttcaaattaaatttttgtaaatccAATTTTATTG
TATGATAATTTTATACGTTTGAAGTTTAGTTCAAGATTAATCTTGATACT
AATTTTAACTTATATTTAATATAAATAACACATAAACGCTATTTTTACTA
ACTATTTACTTTTTTACcatttaataataataaaatactcAAATTGTGTC
TTTTTTAACGACGTTTAAAATGATAAATTGGAAAACTTGTATTTACTATT
TATTCtgcaatttttatattttttaaactaactttcattattttgttatt
ttttgaaagCAATCTTGAGGAAACTGCATACATTTTAGGGCAAGAAGGGT
TCAACACTTACagtacattacattacattctTTATGCAAGTTTCAGAAAT
CCcttgccttaaaaaatcttgaatttttccTGTGGATagtattattttta
aaaaacagaTTTCTCTGAATAATGTAGTAGAACTtactattttcatttca
ataatattttatttgacGCTCAAAAGTAAAGAATTTTATAGAAATATGAA
GAAGTTtatgaatttgataaaaaacaaaaattctaaCAACTCATGCTAAG
AAAGGTCATGACATTTCAACATGGAACCGACCATGAAATGCTActaataa
caacaacaacagaaatGTATTGACCCAGAATAAACCCTGCTAACATCACG
ACTACTTATGTCATCCAACCAATCAACTGAAGAGAGAATTATTACAGAAA
ACTGagcaattttattattttatatgaAGATACTTTTaggtatttattta
tttagcatAGATTATGTgaagagaaataaagaaaaaatgaattttaaaat
atttttg
Run BLAST on NCBI

transcript from alignment at sc0000408:179105..184078+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022215 ID=TCONS_00022215|Name=TCONS_00022215|organism=Clytia hemisphaerica|type=transcript|length=4974bp|location=Sequence derived from alignment at sc0000408:179105..184078+ (Clytia hemisphaerica)
TTTAGAAGGAACTAGCAATCTACTGCTTTACTACTATAATAGACCATCGT
ATTTTACCGACTAAATTTTTGATAACAAATACAATCAAGCAAGATTCAAG
AAGAAGTCCTCTATTTGCTTGGTATTGATATTACAGGGGAATctgtattc
aatttttcacgtACGGTGGTGGCTTTCCTATCATAGCgagcttacacgtt
ttttttattagaatctagtttaagaacattttaggcagataatcgctaaa
aaataagcacatccaggctcagtcaaattttaggtgttctaatgaaaaaa
aacgtgtattacacCTGCGCTATCCAGTCTTCAGTTAATAGCTTCACAAC
AATTTAACTGCAAGTTAAACAGTTCAAAAAGTAAGTaatcttgaaaatta
aaattaaattttagcgACAGAACATGCTTTTTCTGTTTTCGGGACCATTC
ATGGGTACGGTACTCGACAGCACTGATGATATCGTCATCTCAACCTATCT
CAACCGTGGAATTTAGGTACTAGCATATAATAAAAGGGTGTTAGCAGGTA
CATACAGAATCACCAGGGAGGCGTGTCACTTACAATCACTCACTTCACGC
AAGACAGCTCGCTTCCACGCGCGTGTATAATAAAGACCAGAAAAAGTAAG
CGACCGCAAAATCATGTTGTGTTACGACTTGCGAATTTGcatttcgcaaa
aaaaaaaacacgttttttgGTGAGGATCTAAATCTTATTAGAGGAGAAAT
TCCTTTTCCAATATATTTGTGCTTAGGATTGACTCTTTATTgtatctttt
tctcaaaaaaatcacaatgtTTTCTCTCGAGTTTTATTAGTGCGGatgtt
tgatatttttctttctgttaaACTTTTTATTTACGAAGCGACGGGGAGCT
TTGTTTTTCCAGCCTCGAGTTGGTGAGTTTCGCGCTTTTCAGGGGTTTAG
AATACAACAAGAAATGACCTCTTTTGTTTCGTTTAGTACTTAagtcatga
aaaaaatttttttttcataacgaAATTTTTATTAACGAAGATTTGATGTC
ATAGAAGAATCATATTAATATTTAAGAGAGGcaagaaagaaatatttttg
tatgcGCTGACCCCCGTCTCAAATCAGTGTTCTTCTACTAACAAATCAAG
CTGGCGAGAATTTCTGATCACTCACAAAATACCTTGCCTCTTGACAGGAC
GACACAAGACGAACACGAGACTAACTCCAAAAAGGCAAGGTTGTATAATT
CAACAACACAGAATTCATCTAACCAACTCATAACAAATTCAACTACCACA
ACAGCAGCAAGAAAAATGAATGTTCCAGACGAGCTCACCGCTACAGAATA
CTTGAATCAGCTATTGCAAGACAAAACTACTGTCTCAAAAATGCCGAAGA
TCTTTTTGCATTCTGAAAGACTTCTAGATGAAGGTGAGTTAGCTGTGATT
ACTCTTTTGATTCTAgtaaaaccttttgaaaaatgtCCCTGACAAAATGC
CCATTGTCTAAGAAAGCTGATTAAAATCAATCTCTTTTTCGACAGACAAC
TTCCTTAAGGTTATTTAATTAATTTTGTAGTAAGAGGTTTACCATAATGA
CGTAGAAATTACATCTCTCTGCATACTGCAAGCATGTTTTTGTCAGCAGC
TTGATTAAAAATGTCTGTTTTGACTTTTGATTTATATTagatatcaatgt
tttgattcaatttttcaatattcaTAACATTGTTTGTagtttttgtaata
aaaatttgaatatttcttaGAAGAGCTACATGTTATATCCTGATTTTGTT
CGATTTGGGTTATTTCCTTTTACTATCACTTATTATTGATACACaccttt
tttatagaaattagTCGTGTACGAAATGACATATTTTGCCCGTCAAGCTT
CTTGATGTCACTGCCAAAACCCTCTGGACCTCCTGTGAAGTTAACTGAAA
AAGTTTATGCAAAAGTCAAAGATCACCCTAAAGTAAGTAAATATTGTAGT
GTTTCATTGTGCCAGTTCTAATATTGATCAGGCCCCATTTCAAATACCCC
TGTTGAAGTGGGTTGAAATTAACATATGAAATTTCTTTCCGGCCATTATG
GAACACGTGGTGAAGGAGTGAGTGCTCTTGAGAAAATGTAAGTCACCATT
GACGGCCTAAATAAAGTGATGTGAGTAAAATTGAGCTTTTCAAATGCTAG
AAATAGTTGTTGCCCAACTCTGTTGTTTCAGATATTGTCTGAAAATACTT
TTCCCATGTAAATTGCTAAAAATTTCCCCGGAAAAGTCGATTGTGCGCTG
TAGAGGGATTAATCATCAAAATTCTATTCACACTGATAGTGATAACATAG
CCTTTCATAATATAGCCTTTCATAATTCAGATTACTTCTGCAAGAACTGT
TAGCGGTAAAATAATGATCAGTCCGAATTCTTAAAAGGCAGGGTTGCGTC
CCCTAAGCTTTATCCAGGCTAATTTTTTGGATATGAATGTAACATTTCTT
TATTCtataaatttcatgttttattttaAGTTCAACTTTGTTGGTCGTAT
TATTGGTCCACGTGGTCTCACCTTACGTCAAGTTGAGCAAGAAACAGGAG
GGAAGCTTCTTGTTAGAGGAAGAGGTTCAATGAAAGACAAGAAAGTGGAG
GAAGAAAAACGTGGACAACCAAACTATGAGCATTTGGATGAGGATCTTCA
TGTTTTGATAATGGTTGAAGATACTGAAGATCGTGCTcgaatgaaattga
aaaaagctgTTGAAGAAGTTAACTTCCTCCTTACACCTCCAgtaagaaaa
ttatgtttttgaatttGGAATCATTATATACCAAACAAATCTCAAGTGCT
CTAAAATTCTTTGCATATAAGTTGATATGCATTCAGCAACTTTGTTTATG
TGTTTTACAGGCAGTACAGGGTATTTGAGTAAGGGAGCTCAATTTTGTTT
TCCTCATAATTTCAGAAAGACGGAGAAGATGCGATAAAAAAGAAGCAACT
TCAGGATCTTGCAATTTTAAATGGTACTTACAGACACCCCAACAGTGAGG
CAAGCCCTCCTGCTGCTGCCACAGTCACTCAAAATGGTGGTAAGCAatgt
tttcaattattttgaagttaatatgataattatgaaaaatcaaACCCCAA
GCAGATCAGGCTATTTTTGTTTCCTCTTCTGACCTGGtaagatgttttgt
ttttaccCAGAACTCCTTTTTATCCGGGTGGAACATTTTGAATAAGAGGA
TAagtttttactttaaaattttgaaaatttttctttcagtatCTCCAACT
GGGCTGTTAAGTTTTCCGAGTCCTTCACCAGTCGTTCCACAAAACAATAC
ATCATTTCCAGCCATCCGAAACTCAGCAGGTGAGCCTGTTCATTACGACA
AcatgattttccgattttgtgATTTCGGTATAAATCCAACAGTGCCTACA
CAACAACATCCATCTTCGCGATCGTTCGGTTGTTGCTCTCCAACTGTGTT
TTAAGGAATCTTTTTGTGCAATGTGTTACATCAGGGTGgactttttgagt
ttggttttcaaatttgaaatttaattatGTGTGGTGTATTAAACCTAAAC
TTCAAAGTTTGCTACTAATCACTAGaacttttttaacattttggtaATTT
GAATGGTGCATTATAAATGTCAATAAGAATTTATGAAGGGATAACTAATA
ATTTATTGCAATAACCAAAATTAACTCTAAATTATAAAATCAGCATAACA
TTTTTGAGTTCTTAACAAAACTAAAGACATTAGTTGTATATAGTTGGACT
GGACCTTATCAACTTTTGTGGAACCTCCAATAAAACTAAAAAGCTACTGA
CCATAATGTTAAACAACTTTACCAAATAAAACTATTTGTCTGAATCTAAT
TTGATTTCAGCAGCTGCACTGCAAGGCTTATATCCTCTTGAAACTTTCGC
TCAAAGAGGCACACCGGGTGCTTCGTTTCTGGATTTTACCAATCTGGATG
GCAGCTCGCTAATTTTGAGTAAAAGATGATAATTCATTCCAAACCGGCTG
TAACAACTACtgtccaaaaatttaaaaactgttttgttgtgatttggttt
atgtttttttattgcGATATtcgcaaaataaatttcaaattaaatttttg
taaatccAATTTTATTGTATGATAATTTTATACGTTTGAAGTTTAGTTCA
AGATTAATCTTGATACTAATTTTAACTTATATTTAATATAAATAACACAT
AAACGCTATTTTTACTAACTATTTACTTTTTTACcatttaataataataa
aatactcAAATTGTGTCTTTTTTAACGACGTTTAAAATGATAAATTGGAA
AACTTGTATTTACTATTTATTCtgcaatttttatattttttaaactaact
ttcattattttgttattttttgaaagCAATCTTGAGGAAACTGCATACAT
TTTAGGGCAAGAAGGGTTCAACACTTACagtacattacattacattctTT
ATGCAAGTTTCAGAAATCCcttgccttaaaaaatcttgaatttttccTGT
GGATagtattatttttaaaaaacagaTTTCTCTGAATAATGTAGTAGAAC
TtactattttcatttcaataatattttatttgacGCTCAAAAGTAAAGAA
TTTTATAGAAATATGAAGAAGTTtatgaatttgataaaaaacaaaaattc
taaCAACTCATGCTAAGAAAGGTCATGACATTTCAACATGGAACCGACCA
TGAAATGCTActaataacaacaacaacagaaatGTATTGACCCAGAATAA
ACCCTGCTAACATCACGACTACTTATGTCATCCAACCAATCAACTGAAGA
GAGAATTATTACAGAAAACTGagcaattttattattttatatgaAGATAC
TTTTaggtatttatttatttagcatAGATTATGTgaagagaaataaagaa
aaaatgaattttaaaatatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012455XLOC_012455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022215-exon-sc0000408-1491911889:179105..179264TCONS_00022215-exon-sc0000408-1491911889:179105..179264Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:179105..179264TCONS_00022215-exon-sc0000408-1510915933:179105..179264Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:179105..179264TCONS_00022215-exon-sc0000408-1575043694:179105..179264Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1491911889:180302..180537TCONS_00022215-exon-sc0000408-1491911889:180302..180537Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:180302..180537TCONS_00022215-exon-sc0000408-1510915933:180302..180537Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:180302..180537TCONS_00022215-exon-sc0000408-1575043694:180302..180537Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1491911889:180962..181086TCONS_00022215-exon-sc0000408-1491911889:180962..181086Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:180962..181086TCONS_00022215-exon-sc0000408-1510915933:180962..181086Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:180962..181086TCONS_00022215-exon-sc0000408-1575043694:180962..181086Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1491911889:181635..181895TCONS_00022215-exon-sc0000408-1491911889:181635..181895Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:181635..181895TCONS_00022215-exon-sc0000408-1510915933:181635..181895Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:181635..181895TCONS_00022215-exon-sc0000408-1575043694:181635..181895Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1491911889:182070..182193TCONS_00022215-exon-sc0000408-1491911889:182070..182193Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:182070..182193TCONS_00022215-exon-sc0000408-1510915933:182070..182193Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:182070..182193TCONS_00022215-exon-sc0000408-1575043694:182070..182193Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1491911889:182394..182483TCONS_00022215-exon-sc0000408-1491911889:182394..182483Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:182394..182483TCONS_00022215-exon-sc0000408-1510915933:182394..182483Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:182394..182483TCONS_00022215-exon-sc0000408-1575043694:182394..182483Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1491911889:183018..184078TCONS_00022215-exon-sc0000408-1491911889:183018..184078Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1510915933:183018..184078TCONS_00022215-exon-sc0000408-1510915933:183018..184078Clytia hemisphaericaexon
TCONS_00022215-exon-sc0000408-1575043694:183018..184078TCONS_00022215-exon-sc0000408-1575043694:183018..184078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:179105..184078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.02752	3.34305	4.64725	17.7479	24.4695	15.7162	23.9283	0.359802	0.000890484	0	1.62693	0	4.20151e-05	0.00216012	0	2.09622	3.24167	7.54116e-09	0	5.85036	6.98293	1.49625	6.8761e-05	2.67246	0.267877	0	0	4.73955	2.69387
Blast
[Close]
BLAST of TCONS_00022215 vs. Swiss-Prot (Human)
Match: QKI (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.680e-66
Identity = 113/193 (58.55%), Postives = 142/193 (73.58%), Query Frame = 3 
Query:  309 EYLNQLLQDKTTVSKMPK---IFLHSERLLDEEISRVRNDIF------CPSSFLMSLPKPSGPPVKLTEKVYAKVKDHPKFNFVGRIIGPRGLTLRQVEQETGGKLLVRGRGSMKDKKVEEEKRGQPNYEHLDEDLHVLIMVEDTEDRARMKLKKAVEEVNFLLTPPKDGEDAIKKKQLQDLAILNGTYRHPN 860
            +YL QL+ DK  +S +P    IF H ERLLDEEISRVR D++              LP   GP V+L EK+Y  VK++P FNFVGRI+GPRGLT +Q+E ETG K++VRG+GSM+DKK EE+ RG+PN+EHL+EDLHVLI VED ++RA +KLK+AVEEV  LL P  +GED++KK QL +LAILNGTYR  N
Sbjct:   16 DYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRDAN 208
The following BLAST results are available for this feature:
BLAST of TCONS_00022215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QKI2.680e-6658.55Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
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