TCONS_00022209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022209
Unique NameTCONS_00022209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022209 ID=TCONS_00022209|Name=TCONS_00022209|organism=Clytia hemisphaerica|type=transcript|length=1170bp
AGAGTCAACAAGCTTATATGTTTTTATGCAGAATGCTATCAATTCAAATT
GGAAGGTGACCCGTTCAATTACTTTGGAGATAACTCTTCCAACAAGACAG
AAGCGTGTAACCTTTACAGTGAAATCATCAATAGCTATTACAAACGTGGC
TGGAAGttaATTGTTGGTACAATCATGAGTCATCGCAACTTGGAAGACCC
CATCCTTATCTTCAAGAAGATCATAAATCCTAGCAAGAACCCTTTACTTT
CCATAGCCATCGACCATTTCCACATACAGCTGGATAACCTACCAACAGAT
CTTATACCAACTGTAACGTACGTCGTTGAGAATCATCTCAATCATGAtat
caaaaagatcaaacagGACACAGACGGAACTGTCATTTATAAATTAAAAG
GAATGGTGGGCTTGCATGGTGAAGAAACCTGGCAATTCGTGCAAAAATTA
CATGAAATTCTCTATAACAACCATTACACAACATTCGGCCACATTCCACT
ACGTGCTTATAAATGTTTCGACTTGTTATTCTTCCAACATTCAACCACTA
TTCTTGGTATGTttgaaacttgatttttctttatatgaTTGACATATTAG
GGGCATATTAGCTCTTTTGTACGTTTTATAccctttttattagttttaat
ttttgtccTCTAGTGATTGATAGACTCATCCCGGTCAAATCAACAAACAT
TTTACACTTGCGATCCCCATGATGGCTTTAAAAGCCTACTGAAATTATAT
GGATATaacatcacctcgggttaataaatctcaataaccaactttgacct
attgaatatctgcttattatttTCTCTTTAAGACCAAGAACTCTTCACAA
TGTATCTTTTACATGGAGACACAATAGAATTAGAGAATTCAAATCACGTG
ATCAACAACGCCATGGTAGAAGTTATTTCAGAAGCCTGGAAAGGAGGTAT
ACAAAAACAAAGTGAAGATGGCGCACGTTTCAAGTTGAAGTTGAAAGGAT
ATCCTTTCTCTACTTTAAATGAAATGGAATGTTTAGCTACGGATTCATTA
TTCGCCAATATTCTTGAACAATTAGTGTCTGTCGGATATTCTATAGACTG
TTCATTCACGCAAATCAAGTTCGATAAACGCATTATCTTCAAAAGACAAA
AGCCAGTTCATAGAGCGANC
Run BLAST on NCBI

transcript from alignment at sc0000408:153064..156508+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022209 ID=TCONS_00022209|Name=TCONS_00022209|organism=Clytia hemisphaerica|type=transcript|length=3445bp|location=Sequence derived from alignment at sc0000408:153064..156508+ (Clytia hemisphaerica)
AGAGTCAACAAGCTTATATGTTTTTATGCAGGTATTTATCGAATTTCATT
GTTATAATACCTTATCTTattttttacgccggcccttattggcgttattt
ttgggcacatggcgtaataagggccggtgttaaaaggaccggcgtaaaaa
gggccaagattttgcaatttttatctaaaggTGGCGTTAATttattttcg
ataattttttctcaatttaaaggattttaggtatgattcgcagacaaaaa
ttatccattgttttactccatatctaAAACCTcacaaaaatcagtgattt
ttaAGAATGGAATTTTTAACAATATACTACCGAAacatgacattttaatg
taaattttaaacattatttactaatttgaagcataagtagccatttaaaa
attttttggcgTTTTTAACGGctctaattggcgtaagcccaaaattagac
TGTGGCATAATAAGGGCCgtcgtaaaaagggccgataaggtaggtaGAAG
GCCTCAAAGgagaaattttcgcgaaattaagtaaAATATTAAATTGTATT
TTAACCTAGAAACTTAAACAAAATCTACACCACTCCAAACTTTCACTTAA
AGAAGAGAACTACGTGTTAAAATGACATGAAACCAGTATTCTCACTCATG
ATATTTATTTTAGACCACTTAGTTATGATCATTTGACATACTtaaatggg
ataaactttcgcggggacttaatctAGCGGATGAGCACTTCCCTGATTTT
TCGCGTAATTTCGCTGATCAGGATTacatctaatttttctaaagtgattc
caaattttgcaaaatcggGTTAGCAAACAGAAATTTTGACATGGTAGTgt
gcaaaaattggaaaataacGAAGAGATTTGAGTAGTCTGATTTGCGGGAC
GAAAAAACGGCgatagaaatttcaaatttcaaattttcgcgggtacttaa
tttcgcggatgaggcccttccaaatttccattgggatttaatttcgtgga
ttttcgcggatgacactcaaatttaatccccgcgaaagtttatcccatca
AAGTAATTAGATATTTTTCCCAAATACTCTAATCACATTATTCTAGGGGA
CAGACGAATTAAAGCTGTACGTGACGCGATAATAAAATGTTGGTCAAAag
gtatcaaaaatgaaaaggtttTATCTCCAGAATGCTATCAATTCAAATTG
GAAGGTGACCCGTTCAATTACTTTGGAGATAACTCTTCCAACAAGACAGA
AGCGTGTAACCTTTACAGTGAAATCATCAATAGCTATTACAAACGTGGCT
GGAAGGTATTTTCAATTTCACTTGCATTTATTTCTTTCCTAGCAAACTAT
TTAAATTCATTCCAGATTATGCTTTAAAATATTAGCGGAATTAGTTATAA
CATTTTTCTTGGAGTTTCTATCTCATATTTCTTTCATGAACAAGGTACTT
AAAAGACGTTCTAGACGCATATTTTCTGCAAGCAAGGGGATGCAATATAG
ATTTTATAGGACCTATTCTCACTCGCATTTTTTGCACTTGATTGAACTAT
TACGTCTAACTTGTGCTcaattttcccctttttcatttttcagttaATTG
TTGGTACAATCATGAGTCATCGCAACTTGGAAGACCCCATCCTTATCTTC
AAGAAGATCATAAATCCTAGCAAGAACCCTTTACTTTCCATAGCCATCGA
CCATTTCCACATACAGGTATAAATCACACATCATTGTTTCTTTGCGCACT
AccttaaagaaagaaataattcgaaaaaagaaaattcgatGGATTCGCCC
AAACATAATCCTCTAActgctaaattaaattcccgccaaattctAGCCAT
CTGcaaatttccgccaaaatttcttccctaagaaagttttattatgtttt
ttaaAGCTCCTGTGAAATGTTTTGAGTCACAGATTTCGTTATTTGGTCCA
CAGGTTGGTTTTAGAGGAAAGAATACTTTTACTTCATTTGACTTTTGACT
TTCGTTTTAGCTGGATAACCTACCAACAGATCTTATACCAACTGTAACGT
ACGTCGTTGAGAATCATCTCAATCATGAtatcaaaaagatcaaacagGAC
ACAGACGGAACTGTCATTGTAAGAGATTCATGATGTCTAACTTGatgttg
gaaaattttgaaaaataagttttgaataAGGTTCTATTCCTTCTGTTCCA
ACAAATAACTAAAGATTAGACAAATTTAAGGCTGTGATTTcaggaaataa
taaaaataattttaagccCCTCTTTCTTATACCTGATTCAGCCAGTGAGA
TCTTTTTGATCCATGTAAGTTCACTGAGTGTGTGCTGGGTGGGTGTACTG
AGTGTGCTGGCTGGCATTAAACCCTTGAATCTTCCTCTTTACAGTATAAA
TTAAAAGGAATGGTGGGCTTGCATGGTGAAGAAACCTGGCAATTCGTGCA
AAAATTACATGAAATTCTCTATAACAACCATTACACAACATTCGGCCACA
TTCCACTACGTGCTTATAAATGTTTCGACTTGTTATTCTTCCAACATTCA
ACCACTATTCTTGGTATGTttgaaacttgatttttctttatatgaTTGAC
ATATTAGGGGCATATTAGCTCTTTTGTACGTTTTATAccctttttattag
ttttaatttttgtccTCTAGTGATTGATAGACTCATCCCGGTCAAATCAA
CAAACATTTTACACTTGCGATCCCCATGATGGCTTTAAAAGCCTACTGAA
ATTATATGGATATaacatcacctcgggttaataaatctcaataaccaact
ttgacctattgaatatctgcttattatttTCTCTTTAAGACCAAGAACTC
TTCACAATGTATCTTTTACATGGAGACACAATAGAATTAGAGAATTCAAA
TCACGTGATCAACAACGCCATGGTAGAAGTTATTTCAGAAGCCTGGAAAG
GAGGTATACAAAAACAAAGTGAAGATGGCGCACGTTTCAAGTTGAAGTTG
AAAGGATATCCTTTCTCTACTTTAAATGGTAAGTCTGAAGTTTGAATGAG
CTGGTCACATTTTAATCGTGAAAAAGTGATAGTGAAAAACCGCCAACAGA
AACCACGTGATCTTTAGGGAGCGATTACCGAGCGGTCAAGGCGTCAGCGC
CATAAACCAGGGGCTCGCGGGCTCTGTGAAAGTCCTAGATTACAGGGCTC
TTCGTGTAAAATATCGAACCGCCTTACTAACGAAATTCAGACAAATTCGT
TAATTTTGGAGAAGTAAATTACGAAAttcttcttcttgtttttcAGAAAT
GGAATGTTTAGCTACGGATTCATTATTCGCCAATATTCTTGAACAATTAG
TGTCTGTCGGATATTCTATAGACTGTTCATTCACGCAAATCAAGTTCGAT
AAACGCATTATCTTCAAAAGACAAAAGCCAGTTCATAGAGCGANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012453XLOC_012453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022209-exon-sc0000408-1491911889:153064..153094TCONS_00022209-exon-sc0000408-1491911889:153064..153094Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1510915933:153064..153094TCONS_00022209-exon-sc0000408-1510915933:153064..153094Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1575043694:153064..153094TCONS_00022209-exon-sc0000408-1575043694:153064..153094Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1491911889:154244..154368TCONS_00022209-exon-sc0000408-1491911889:154244..154368Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1510915933:154244..154368TCONS_00022209-exon-sc0000408-1510915933:154244..154368Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1575043694:154244..154368TCONS_00022209-exon-sc0000408-1575043694:154244..154368Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1491911889:154657..154779TCONS_00022209-exon-sc0000408-1491911889:154657..154779Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1510915933:154657..154779TCONS_00022209-exon-sc0000408-1510915933:154657..154779Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1575043694:154657..154779TCONS_00022209-exon-sc0000408-1575043694:154657..154779Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1491911889:155074..155181TCONS_00022209-exon-sc0000408-1491911889:155074..155181Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1510915933:155074..155181TCONS_00022209-exon-sc0000408-1510915933:155074..155181Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1575043694:155074..155181TCONS_00022209-exon-sc0000408-1575043694:155074..155181Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1491911889:155458..156091TCONS_00022209-exon-sc0000408-1491911889:155458..156091Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1510915933:155458..156091TCONS_00022209-exon-sc0000408-1510915933:155458..156091Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1575043694:155458..156091TCONS_00022209-exon-sc0000408-1575043694:155458..156091Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1491911889:156360..156508TCONS_00022209-exon-sc0000408-1491911889:156360..156508Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1510915933:156360..156508TCONS_00022209-exon-sc0000408-1510915933:156360..156508Clytia hemisphaericaexon
TCONS_00022209-exon-sc0000408-1575043694:156360..156508TCONS_00022209-exon-sc0000408-1575043694:156360..156508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:153064..156508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.107603	0.111375	0	0	0.944724	1.64947	1.06187	0.136611	0.818185	1.98109	0.447313	0.433688	0.12784	0.189647	0.435696	0	0.339411	0.433071	0.325232	0.643653	0.79619	0.14769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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