TCONS_00022203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022203
Unique NameTCONS_00022203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022203 ID=TCONS_00022203|Name=TCONS_00022203|organism=Clytia hemisphaerica|type=transcript|length=1713bp
TGGAAATGTATACACAataaaatTCAATGGCACTCCTTGGAGCTATGTGG
ATAAAATTCAATCATGTACATCTCGCTTGATGATCCGTGAAATTGTTGGT
GCTTTAACTGGATATCAAGTGATGCTTTACGGGAATACTAATCTCAAATC
CACGGCTGATACTTTTTTCTTCAGATATGTTCCAAACCAGCAAGCTGAGC
AATTTACGACTGTCAGTTTGAATCGAATGGATCGACTTCGATTGATCCAT
ATGGAGCCCAACGTTGTTTCTGCCATTGAAAATTGTGTACGTCAAACATG
GGTTCGTGGAGTACAAGAAGTCTTAGATAAAAGACCTTTGTGTTATGAAT
TGAAGTTGAGAGGCTATCCATGGTGGTGCTATGGGGAGGAAGGAGTATCA
GCTCGACTCCTCATTTGCCGCATCCTGGAAACAATGGCAAGCATTGGATA
CTACATTGTGTCAGGTCTAGATGTTACACGAAAAGATAACGATAAGTCGC
TGTTATTGTTCAGACAGGGTGCTCCGATGCAAGCACGTTTCTTGGTCTGT
TCTTTGAATTCAACTGATAAAGTCAAACTTATAAACGCTCCCAATGAAGT
TGTTCAGGCTGCTCAAAGAATCTTTGCATTATGGGTATTAGGACATCAAG
TGAAGCCGGCAGCTGAACTACCACCTGGCTGCTCTTACCAAgtgAAATTG
AACGGAAACCCATGGTCGAATATGATGGTCAAAGATGGTTACCACGGACG
TGCTTTATTATTAGGATTACTAGGTGCTTTTTCTGACCTCGGTTGGCGTC
TGGTCACATCAGCTGATGTTTCTGCGAAGTATGTTCACCAGGACAAAGGA
CCGGACTATCCTCTTGATGTACACAGTTGGTATTTCATGTATGACCCAAG
CCTTCTCGCACAACGTCAACCTATGCATCAACAATATGGATTACTATATC
CCACCCTTCCTGTTCAGGGTGGCCCGCCACCTGTTTATTATGCACCGCCA
CCAGCATACGCCCCACCGCCCCCAGGTTACAATCAGGTCGCCCCACCTCT
AATGCCACCTCAGTAAGATTTGGTTGtttcaaaatggaatattttgaatt
ttatttgcttGGACGTTGAATGGTATTATGTTTTTGGTTCTGGATCATCC
AAATTCCAAGGTCATTTTCATATAttatgatggtatgatggttgacaata
aatttgaaaaatttaactgactgttttaaatatattttaaaatggGAATT
GATTGGTAGGTATTGATGCTTGTTCAAGAGGGGGTAGTTAGAAATATGAT
GGtattaatatttttgtaagGTAATATTATCGAATATATAACTTTGATAT
AATCTTTAGTAGTATAAGTGTCTTTAGAGTATTTGTGTATAATATACAAT
CTGTCTTGTAATTTTTGTATAATTAATGTTATTTCTGTTTTCTAGATTTG
ATAATTCTCACGTTTtctgttttgttattttttctaataTTCAATCCACT
ATGTCCATactatatttattttttgagtgAGCTCGCTCAATACTTACTTT
GTATTCTCCTCATACATTTTTTGTTTGGtgcttttatttttcatttctgt
cATATATATAcaagatataaaaaatatatagaatGAATATGTACAAATAT
TGAAATACAATTGCAGAATTTGGAGTTTGGCAATTGAAATATCTCCAAAA
TAATACAGTGGGc
Run BLAST on NCBI

transcript from alignment at sc0000408:146149..150947+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022203 ID=TCONS_00022203|Name=TCONS_00022203|organism=Clytia hemisphaerica|type=transcript|length=4799bp|location=Sequence derived from alignment at sc0000408:146149..150947+ (Clytia hemisphaerica)
TGGAAATGTATACACAGTAAGAATCTATCcataagatttttaaaatggcT
TTCTGGTCATTTAAAAACAAGTTTGACACAATTTTTGTGTAGCTACACCT
GGTAATATGCCAGAAATGAGTTACCTTCATTGATATGCCTGTATTAAACA
GTATtagtaagatttttgaaattttttaaaaattgaaaattgggcTTTCT
TCTTAACGATTCCCATTACCAATTTTTGATAGGTAGATTGGGGAAGCAAA
AGttactttttttattaaaatcaaaaacaacctttttttatttcctaTCT
CTTTTTACTGGCTAGTAtaatgatttgaaatttttaagataaaatTCAAT
GGCACTCCTTGGAGCTATGTGGATAAAATTCAATCATGTACATCTCGCTT
GATGATCCGTGAAATTGTTGGTGCTTTAACTGGATATCAAGTGATGCTTT
ACGGGAATACTAATCTCAAATCCACGGCTGATACTTTTTTCTTCAGATAT
GTTCCAAACCAGCAAGGTAACATTGGTCCTCATGACTTAACCTTTTGAGg
tctttttcaaactttgaattttttccgGGCCTAGGACCAGTTTCGAGCGT
CAAAATAATTCTATCCTATGTACTGACTATCCTATACACATTTGACGTGC
TTTTAACCTTTATTTTACCAACCTATCTATGATTTTTAGCTGAGCAATTT
ACGACTGTCAGTTTGAATCGAATGGATCGACTTCGATTGATCCATATGGA
GCCCAACGTTGTTTCTGCCATTGAAAATTGTGTACGTCAAACATGGGTTC
GTGGAGTACAAGAAGTCTTAGATAAAAGACCTTTGTGTTATGAATTGAAG
TTGAGAGGCTATCCATGGTGGTGCTATGGTAATTGAAATTGTTCTATTTA
CCAGGGAAAAATGGGAAAGTGACCAAATCTTTGACCAGAAAATCCTACTC
GGCCAACTATAGCGTGTATatgattttaaagttttgataaaGAGAGATAT
CTCTTTTCAAATTCTCTGGTTACTTTGATTTCTCCCCAACTAGGTAAAGC
AAATATTCTTTATCTAGCTTCAATCACCTTGGGTACTGGTATTAgagatt
tgataaaattttagggtTCCTAATTGAAGCTAGGTGCAGGTGCAGCTAAT
AAACTAATTGCTTGAGTACTGAACATTTGGTAACAGGAGTAACTGTTAAA
CCTTTGAACTCTTTCAATTTCTTTAGGGGAGGAAGGAGTATCAGCTCGAC
TCCTCATTTGCCGCATCCTGGAAACAATGGCAAGCATTGGATACTACATT
GTGTCAGGTCTAGATGTTACACGAAAAGATAACGATAAGTCGCTGTTATT
GTTCAGACAGGGTGCTCCGATGCAAGCACGTTTCTTGGTCTGTTCTTTGA
ATTCAACTGATAAAGTCAAACTTATAAACGCTCCCAATGAAGTTGTTCAG
GTTTGATATTCATTTCATTCAATAGCTTTATGAATATTTATTTAGCCTAC
CAAGCGTTGCACCCACCAAGTAAAGTGGTATATACACACAAAAAAGTTCT
CTGGATGGTGTTGGACAAGGTTTCAGAGAAAGACTGAGCCCAAAGAACAT
GAAACTTAAAACCAATCAAatcttgaaaatgttttgatttcattcTGTAT
GTTGTCATTGGTTCAATTCTTTGAGAATTAAACAAAATTATCTAAAAGTA
TCAACAATTATTGACTCTTAGGCTGCTCAAAGAATCTTTGCATTATGGGT
ATTAGGACATCAAGTGAAGCCGGCAGCTGAACTACCACCTGGCTGCTCTT
ACCAAGTAAGAATACTATAGTTTTCATtatctttcaaacaaaaatgcTTT
GGTGGAAatgttatacattttgaaaactcaagcaTTTTGCATTCATCGCC
TCTATGATTTATCAAAGTGAAGAtgtgtttttttaactttgcatTGATTT
CATTATCTTAGactgaaattgattttctcATCTCAAATTATTTACCCTGT
AATtccatatttttactttttaggtgAAATTGAACGGAAACCCATGGTCG
AATATGATGGTCAAAGATGGTTACCACGGACGTGCTTTATTATTAGGATT
ACTAGGTGCTTTTTCTGACCTCGGTTGGCGTCTGGTCACATCAGCTGATG
TTTCTGCGAAGTATGTTCACCAGGACAAAGGACCGGACTATCCTCTTGAT
GTACACAGTTGGTATTTCATGTATGACCCAAGCCTTCTCGCACAACGTCA
ACCTATGCATCAACAATATGGATTACTATATCCCACCCTTCCTGTTCAGG
GTGGCCCGCCACCTGTTTATTATGCACCGCCACCAGCATACGCCCCACCG
CCCCCAGGTTACAATCAGGTCGCCCCACCTCTAATGCCACCTCAGTAAGA
TTTGGTTGtttcaaaatggaatattttgaattttatttgcttGGACGTTG
AATGGTATTATGTTTTTGGTTCTGGATCATCCAAATTCCAAGGTCATTTT
CATATAttatgatggtatgatggttgacaataaatttgaaaaatttaact
gactgttttaaatatattttaaaatggGAATTGATTGGTAGGTATTGATG
CTTGTTCAAGAGGGGGTAGTTAGAAATATGATGGtattaatatttttgta
agGTAATATTATCGAATATATAACTTTGATATAATCTTTAGTAGTATAAG
TGTCTTTAGAGTATTTGTGTATAATATACAATCTGTCTTGTAATTTTTGT
ATAATTAATGTTATTTCTGTTTTCTAGATTTGATAATTCTCACGTTTtct
gttttgttattttttctaataTTCAATCCACTATGTCCATactatattta
ttttttgagtgAGCTCGCTCAATACTTACTTTGTATTCTCCTCATACATT
TTTTGTTTGGtgcttttatttttcatttctgtcatatatatatatacaag
atataaaaaaatttagaatgaaTATGTACAAATATTGAAATACAATTGCA
GAATTTGGAGTTTGACAATTGAAATATCCCCAAAATAATACAGTGGGctc
tcaaacttttttttccgaatttttctataatttagACGACTTTAGGCCCA
GGAGGCGGGTACAAACTTTCGCAATCGAGAcataaaaattaatattttca
caCGAAAAAATAGCTTCGAGGGACATAATACTCCTATACCACTATACTTG
AATTGGGTTAAAACTTTAGTATTTTGACTTGAGGCTTTTAAATAGGCTAA
AAAGGGCCACaaatcttacattttattttatgttGTAAGtattacagatt
ttctattttgtgaaGAANATGGTGTTGGACAAGGTTTCAGAGAAAGACTG
AGCCCAAAGAACATGAAACTTAAAACCAATCAAatcttgaaaatgttttg
atttcattcTGTATGTTGTCATTGGTTCAATTCTTTGAGAATTAAACAAA
ATTATCTAAAAGTATCAACAATTATTGACTCTTAGGCTGCTCAAAGAATC
TTTGCATTATGGGTATTAGGACATCAAGTGAAGCCGGCAGCTGAACTACC
ACCTGGCTGCTCTTACCAAGTAAGAATACTATACTTTGGTGGAAATGTTA
TACATTTGAAAAgtctaaaaaaagtttaaaactcAAGCATTTTGCATTCA
TTGCCTCTATGATTTATCAAAGTGAAGATGTGTTTTTTAACTTTGCATTG
ATTTCATTATCTTagattgaaattgattttctcATCTCAAATTATTTACC
CTGTAAttccatttttttactttttaggtgAAATTGAACGGAAACCCATG
GTCGAATATGATGGTCAAAGATGGTTACCACGGACGTGCTTTATTATTAG
GATTACTAGGTGCTTTTTCTGACCTCGGTTGGCGTCTGGTCACATCAGCT
GATGTTTCTGCGAAGTATGTTCACCAGGACAAAGGACCGGACTATCCTCT
TGATGTACACAGTTGGTATTTCATGTATGACCCAAGCCTTCTCGCACAAC
GTCAACCTATGCATCAACAATATGGATTACTATATCCCACCCTTCCTGTT
CAGGGTGGCCCGCCACCTGTTTATTATGCACCGCCACCAGCATACGCCCC
ACCGCCCCCAGGTTACAATCAGGTCGCCCCACCTCTAATGCCACCTCAGT
AAGATTTGGTTGtttcaaaatggaatattttgaattttatttgcttGGAC
GTTGAATGGTATTATGTTTTTGGTTCTGGATCATCCAAATTCCAAGGTCA
TTTTCATATAttatgatggtatgatggttgacaataaatttgaaaaattt
aactgactgttttaaatatattttaaaatggGAATTGATTGGTAGGTATT
GATGCTTGTTCAAGAGGGGGTAGTTAGAAATATGATGGtattaatatttt
tgtaagGTAATATTATCGAATATATAACTTTGATATAATCTTTAGTAGTA
TAAGTGTCTTTAGAGTATTTGTGTATAATATACAATCTGTCTTGTAATTT
TTGTATAATTAATGTTATTTCTGTTTTCTAGATTTGATAATTCTCACGTT
TtctgttttgttattttttctaataTTCAATCCACTATGTCCATactata
tttattttttgagtgAGCTCGCTCAATACTTACTTTGTATTCTCCTCATA
CATTTTTTGTTTGGtgcttttatttttcatttctgtcATATATATAcaag
atataaaaaatatatagaatGAATATGTACAAATATTGAAATACAATTGC
AGAATTTGGAGTTTGGCAATTGAAATATCTCCAAAATAATACAGTGGGc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012451XLOC_012451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022203-exon-sc0000408-1491911889:146149..146164TCONS_00022203-exon-sc0000408-1491911889:146149..146164Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1510915933:146149..146164TCONS_00022203-exon-sc0000408-1510915933:146149..146164Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1575043694:146149..146164TCONS_00022203-exon-sc0000408-1575043694:146149..146164Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1491911889:146487..146664TCONS_00022203-exon-sc0000408-1491911889:146487..146664Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1510915933:146487..146664TCONS_00022203-exon-sc0000408-1510915933:146487..146664Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1575043694:146487..146664TCONS_00022203-exon-sc0000408-1575043694:146487..146664Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1491911889:146838..147026TCONS_00022203-exon-sc0000408-1491911889:146838..147026Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1510915933:146838..147026TCONS_00022203-exon-sc0000408-1510915933:146838..147026Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1575043694:146838..147026TCONS_00022203-exon-sc0000408-1575043694:146838..147026Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1491911889:147375..147598TCONS_00022203-exon-sc0000408-1491911889:147375..147598Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1510915933:147375..147598TCONS_00022203-exon-sc0000408-1510915933:147375..147598Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1575043694:147375..147598TCONS_00022203-exon-sc0000408-1575043694:147375..147598Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1491911889:149634..149717TCONS_00022203-exon-sc0000408-1491911889:149634..149717Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1510915933:149634..149717TCONS_00022203-exon-sc0000408-1510915933:149634..149717Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1575043694:149634..149717TCONS_00022203-exon-sc0000408-1575043694:149634..149717Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1491911889:149926..150947TCONS_00022203-exon-sc0000408-1491911889:149926..150947Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1510915933:149926..150947TCONS_00022203-exon-sc0000408-1510915933:149926..150947Clytia hemisphaericaexon
TCONS_00022203-exon-sc0000408-1575043694:149926..150947TCONS_00022203-exon-sc0000408-1575043694:149926..150947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:146149..150947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84356e-09	4.31343e-09	0.0774198	0.000646637	0	0	0	0	0	0	0	0	0	0.393021	0	0	0	0	0	0	1.076e-08	3.67448e-08	0.0510002	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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