TCONS_00022202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022202
Unique NameTCONS_00022202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022202 ID=TCONS_00022202|Name=TCONS_00022202|organism=Clytia hemisphaerica|type=transcript|length=1612bp
TGGGCATCAGGAATTCAGAATGAATCATTAGATGGAAATGTATACACAat
aaaatTCAATGGCACTCCTTGGAGCTATGTGGATAAAATTCAATCATGTA
CATCTCGCTTGATGATCCGTGAAATTGTTGGTGCTTTAACTGGATATCAA
GTGATGCTTTACGGGAATACTAATCTCAAATCCACGGCTGATACTTTTTT
CTTCAGATATGTTCCAAACCAGCAAGCTGAGCAATTTACGACTGTCAGTT
TGAATCGAATGGATCGACTTCGATTGATCCATATGGAGCCCAACGTTGTT
TCTGCCATTGAAAATTGTGTACGTCAAACATGGGTTCGTGGAGTACAAGA
AGTCTTAGATAAAAGACCTTTGTGTTATGAATTGAAGTTGAGAGGCTATC
CATGGTGGTGCTATGGGGAGGAAGGAGTATCAGCTCGACTCCTCATTTGC
CGCATCCTGGAAACAATGGCAAGCATTGGATACTACATTGTGTCAGGTCT
AGATGTTACACGAAAAGATAACGATAAGTCGCTGTTATTGTTCAGACAGG
GTGCTCCGATGCAAGCACGTTTCTTGGTCTGTTCTTTGAATTCAACTGAT
AAAGTCAAACTTATAAACGCTCCCAATGAAGTTGTTCAGGCTGCTCAAAG
AATCTTTGCATTATGGGTATTAGGACATCAAGTGAAGCCGGCAGCTGAAC
TACCACCTGGCTGCTCTTACCAAgtgAAATTGAACGGAAACCCATGGTCG
AATATGATGGTCAAAGATGGTTACCACGGACGTGCTTTATTATTAGGATT
ACTAGGTGCTTTTTCTGACCTCGGTTGGCGTCTGGTCACATCAGCTGATG
TTTCTGCGAAGTATGTTCACCAGGACAAAGGACCGGACTATCCTCTTGAT
GTACACAGTTGGTATTTCATGTATGACCCAAGCCTTCTCGCACAACGTCA
ACCTATGCATCAACAATATGGATTACTATATCCCACCCTTCCTGTTCAGG
GTGGCCCGCCACCTGTTTATTATGCACCGCCACCAGCATACGCCCCACCG
CCCCCAGGTTACAATCAGGTCGCCCCACCTCTAATGCCACCTCAGTAAGA
TTTGGTTGtttcaaaatggaatattttgaattttatttgcttGGACGTTG
AATGGTATTATGTTTTTGGTTCTGGATCATCCAAATTCCAAGGTCATTTT
CATATAttatgatggtatgatggttgacaataaatttgaaaaatttaact
gactgttttaaatatattttaaaatggGAATTGATTGGTAGGTATTGATG
CTTGTTCAAGAGGGGGTAGTTAGAAATATGATGGtattaatatttttgta
agGTAATATTATCGAATATATAACTTTGATATAATCTTTAGTAGTATAAG
TGTCTTTAGAGTATTTGTGTATAATATACAATCTGTCTTGTAATTTTTGT
ATAATTAATGTTATTTCTGTTTTCTAGATTTGATAATTCTCACGTTTtct
gttttgttattttttctaataTTCAATCCACTATGTCCATactatattta
ttttttgagtgAGCTCGCTCAATACTTACTTTGTATTCTCCTCATACATT
TTTTGTTTGGtg
Run BLAST on NCBI

transcript from alignment at sc0000408:146117..149060+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022202 ID=TCONS_00022202|Name=TCONS_00022202|organism=Clytia hemisphaerica|type=transcript|length=2944bp|location=Sequence derived from alignment at sc0000408:146117..149060+ (Clytia hemisphaerica)
TGGGCATCAGGAATTCAGAATGAATCATTAGATGGAAATGTATACACAGT
AAGAATCTATCcataagatttttaaaatggcTTTCTGGTCATTTAAAAAC
AAGTTTGACACAATTTTTGTGTAGCTACACCTGGTAATATGCCAGAAATG
AGTTACCTTCATTGATATGCCTGTATTAAACAGTATtagtaagatttttg
aaattttttaaaaattgaaaattgggcTTTCTTCTTAACGATTCCCATTA
CCAATTTTTGATAGGTAGATTGGGGAAGCAAAAGttactttttttattaa
aatcaaaaacaacctttttttatttcctaTCTCTTTTTACTGGCTAGTAt
aatgatttgaaatttttaagataaaatTCAATGGCACTCCTTGGAGCTAT
GTGGATAAAATTCAATCATGTACATCTCGCTTGATGATCCGTGAAATTGT
TGGTGCTTTAACTGGATATCAAGTGATGCTTTACGGGAATACTAATCTCA
AATCCACGGCTGATACTTTTTTCTTCAGATATGTTCCAAACCAGCAAGGT
AACATTGGTCCTCATGACTTAACCTTTTGAGgtctttttcaaactttgaa
ttttttccgGGCCTAGGACCAGTTTCGAGCGTCAAAATAATTCTATCCTA
TGTACTGACTATCCTATACACATTTGACGTGCTTTTAACCTTTATTTTAC
CAACCTATCTATGATTTTTAGCTGAGCAATTTACGACTGTCAGTTTGAAT
CGAATGGATCGACTTCGATTGATCCATATGGAGCCCAACGTTGTTTCTGC
CATTGAAAATTGTGTACGTCAAACATGGGTTCGTGGAGTACAAGAAGTCT
TAGATAAAAGACCTTTGTGTTATGAATTGAAGTTGAGAGGCTATCCATGG
TGGTGCTATGGTAATTGAAATTGTTCTATTTACCAGGGAAAAATGGGAAA
GTGACCAAATCTTTGACCAGAAAATCCTACTCGGCCAACTATAGCGTGTA
TatgattttaaagttttgataaaGAGAGATATCTCTTTTCAAATTCTCTG
GTTACTTTGATTTCTCCCCAACTAGGTAAAGCAAATATTCTTTATCTAGC
TTCAATCACCTTGGGTACTGGTATTAgagatttgataaaattttagggtT
CCTAATTGAAGCTAGGTGCAGGTGCAGCTAATAAACTAATTGCTTGAGTA
CTGAACATTTGGTAACAGGAGTAACTGTTAAACCTTTGAACTCTTTCAAT
TTCTTTAGGGGAGGAAGGAGTATCAGCTCGACTCCTCATTTGCCGCATCC
TGGAAACAATGGCAAGCATTGGATACTACATTGTGTCAGGTCTAGATGTT
ACACGAAAAGATAACGATAAGTCGCTGTTATTGTTCAGACAGGGTGCTCC
GATGCAAGCACGTTTCTTGGTCTGTTCTTTGAATTCAACTGATAAAGTCA
AACTTATAAACGCTCCCAATGAAGTTGTTCAGGTTTGATATTCATTTCAT
TCAATAGCTTTATGAATATTTATTTAGCCTACCAAGCGTTGCACCCACCA
AGTAAAGTGGTATATACACACAAAAAAGTTCTCTGGATGGTGTTGGACAA
GGTTTCAGAGAAAGACTGAGCCCAAAGAACATGAAACTTAAAACCAATCA
AatcttgaaaatgttttgatttcattcTGTATGTTGTCATTGGTTCAATT
CTTTGAGAATTAAACAAAATTATCTAAAAGTATCAACAATTATTGACTCT
TAGGCTGCTCAAAGAATCTTTGCATTATGGGTATTAGGACATCAAGTGAA
GCCGGCAGCTGAACTACCACCTGGCTGCTCTTACCAAGTAAGAATACTAT
AGTTTTCATtatctttcaaacaaaaatgcTTTGGTGGAAatgttatacat
tttgaaaactcaagcaTTTTGCATTCATCGCCTCTATGATTTATCAAAGT
GAAGAtgtgtttttttaactttgcatTGATTTCATTATCTTAGactgaaa
ttgattttctcATCTCAAATTATTTACCCTGTAATtccatatttttactt
tttaggtgAAATTGAACGGAAACCCATGGTCGAATATGATGGTCAAAGAT
GGTTACCACGGACGTGCTTTATTATTAGGATTACTAGGTGCTTTTTCTGA
CCTCGGTTGGCGTCTGGTCACATCAGCTGATGTTTCTGCGAAGTATGTTC
ACCAGGACAAAGGACCGGACTATCCTCTTGATGTACACAGTTGGTATTTC
ATGTATGACCCAAGCCTTCTCGCACAACGTCAACCTATGCATCAACAATA
TGGATTACTATATCCCACCCTTCCTGTTCAGGGTGGCCCGCCACCTGTTT
ATTATGCACCGCCACCAGCATACGCCCCACCGCCCCCAGGTTACAATCAG
GTCGCCCCACCTCTAATGCCACCTCAGTAAGATTTGGTTGtttcaaaatg
gaatattttgaattttatttgcttGGACGTTGAATGGTATTATGTTTTTG
GTTCTGGATCATCCAAATTCCAAGGTCATTTTCATATAttatgatggtat
gatggttgacaataaatttgaaaaatttaactgactgttttaaatatatt
ttaaaatggGAATTGATTGGTAGGTATTGATGCTTGTTCAAGAGGGGGTA
GTTAGAAATATGATGGtattaatatttttgtaagGTAATATTATCGAATA
TATAACTTTGATATAATCTTTAGTAGTATAAGTGTCTTTAGAGTATTTGT
GTATAATATACAATCTGTCTTGTAATTTTTGTATAATTAATGTTATTTCT
GTTTTCTAGATTTGATAATTCTCACGTTTtctgttttgttattttttcta
ataTTCAATCCACTATGTCCATactatatttattttttgagtgAGCTCGC
TCAATACTTACTTTGTATTCTCCTCATACATTTTTTGTTTGGtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012451XLOC_012451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022202-exon-sc0000408-1491911889:146117..146164TCONS_00022202-exon-sc0000408-1491911889:146117..146164Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1510915933:146117..146164TCONS_00022202-exon-sc0000408-1510915933:146117..146164Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1575043694:146117..146164TCONS_00022202-exon-sc0000408-1575043694:146117..146164Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1491911889:146487..146664TCONS_00022202-exon-sc0000408-1491911889:146487..146664Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1510915933:146487..146664TCONS_00022202-exon-sc0000408-1510915933:146487..146664Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1575043694:146487..146664TCONS_00022202-exon-sc0000408-1575043694:146487..146664Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1491911889:146838..147026TCONS_00022202-exon-sc0000408-1491911889:146838..147026Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1510915933:146838..147026TCONS_00022202-exon-sc0000408-1510915933:146838..147026Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1575043694:146838..147026TCONS_00022202-exon-sc0000408-1575043694:146838..147026Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1491911889:147375..147598TCONS_00022202-exon-sc0000408-1491911889:147375..147598Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1510915933:147375..147598TCONS_00022202-exon-sc0000408-1510915933:147375..147598Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1575043694:147375..147598TCONS_00022202-exon-sc0000408-1575043694:147375..147598Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1491911889:147870..147953TCONS_00022202-exon-sc0000408-1491911889:147870..147953Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1510915933:147870..147953TCONS_00022202-exon-sc0000408-1510915933:147870..147953Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1575043694:147870..147953TCONS_00022202-exon-sc0000408-1575043694:147870..147953Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1491911889:148172..149060TCONS_00022202-exon-sc0000408-1491911889:148172..149060Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1510915933:148172..149060TCONS_00022202-exon-sc0000408-1510915933:148172..149060Clytia hemisphaericaexon
TCONS_00022202-exon-sc0000408-1575043694:148172..149060TCONS_00022202-exon-sc0000408-1575043694:148172..149060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:146117..149060 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13263e-09	1.24517e-08	0.00623079	0.00016142	0	0	6.609e-05	0	0.368277	0	0	0	0.300116	0.0984866	0	0	0	0	0	0	3.09518e-10	1.73904e-07	1.75255	0	0	0	0	0	0	1.77917e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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