TCONS_00022192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022192
Unique NameTCONS_00022192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022192 ID=TCONS_00022192|Name=TCONS_00022192|organism=Clytia hemisphaerica|type=transcript|length=1324bp
CTTTTCGAAAGTAGGCAAGTCAAAAATTGCCCGTGTTGAAGGCCTTTGGT
ATTTTGCTTTGGCAAGCTTCTCCCGACTGGTGAAACTTCAAAAGAATTTC
GAAAGAAGTTCCCAATACCATAATAATTACATCCTTGGAATTGTTCATAA
TTACACATCGACTTAAATATTAGAATGGCAGAAGATCCCAGAATTGACAC
CAGTCGTATTGATCCTAAACCACAAAGTATATCTGAAGCATACGCTGTTC
CtgcaaattttttagaaattgatGTGTGTAGTCCACAAACACATGGTGTT
GGTAAAAAAAGATATACAGATTATGAAGTACGAATGAAGaccAATATCCC
GATATTCAAACAAAAAGAATCCAGTGTGCGTCGAAGATATAGCGATTTCG
AATGGGTGCGATCGGAGCTAGAACGGGATAGTAAAATTGTAGTCCCATCA
TTACCGGGTAAAGCGTTAAAGAAAATGTTACCGTTTCGCGCAGACGATGG
TATTTTCGAGGACGAGTTCATTGAAGAACGAAGACAAGGCCTTGAAGGGT
TCATTAACAGAGTTGCTGGCCATCCATTGGCACAAAACGAACGTTGCCTT
CACATCTTTTTACAAGAAGCAATCATCGATAAAAATTACGTCCCTGGTAA
AATACGCAACGTGTAATCTACGCATGCGCAGTAGTAGGTTTTTATCACAC
AGTGAATCAATTCAAAACACACTCTTCTTCCTTTAAGTAGATATGTCATT
TTTGTCTTTCTTTCCTACTCAATATAAAACTGTGTAGGTAAAAATCCAAA
agctttcactttcgttttacTGGTTGAAATCATGACAAAATGACTTTTTC
GAAGAATTTGTCTTTTTGGTACAAAAgcaagtcttttatgttttctttca
tattattcgacgttgaaatcattttttttccaTATAGATCAAAAATCAGT
CATGAAAAAATGACTTATTAATTTAGTCCTTTCTGTTGTCCTTCATATAT
CCTGTTTTGAACCAGTAAAATACTGAGCATTGAAAGCTTTTGAGAGATCT
ACCTTTTTAAGTTATATCTTgtattgtaattttttataCATCAATGTTAT
GGAAAATTGAATTTGTTTCTCCTCAAACTTGACATCTCAATGAACTTATA
CTAATTGACTGATGatgctgaattttttttaaatgatgaaaTGTAAAACA
CCCGAGGGTAATAAGGCGTATATAtatttgtaaaagatttcttttttttt
tgcggaATTTACTTTAATTGTAGAaataaatatttgataaaataaacATC
AATACACTTCTTAATATAATCTAT
Run BLAST on NCBI

transcript from alignment at sc0000408:98023..111567+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022192 ID=TCONS_00022192|Name=TCONS_00022192|organism=Clytia hemisphaerica|type=transcript|length=13545bp|location=Sequence derived from alignment at sc0000408:98023..111567+ (Clytia hemisphaerica)
CTTTTCGAAAGTAGGCAAGTCAAAAATTGCCCGTGTTGAAGGCCTTTGGT
ATTTTGCTTTGGCAAGCTTCTCCCGACTGGTGAAACTTCAAAAGAATTTC
GAAAGAAGTTCCCAATACCATAATAATTACATCCTTGGAATTGTTCATAA
TTACACATCGACTTAAATATTAGAATGGCAGAAGATCCCAGAATTGACAC
CAGTCGTATTGATCCTAAACCACAAAGTATATCTGAAGCATACGCTGTTC
CtgcaaattttttagaaattgatGTGTGTAGTCCACAAACACATGGTGTT
GGTAAAAAAAGATATACAGATTATGAAGTACGAATGAAGGTAAAATTGTT
TAATTCGATGAATTTCTAGAAATCTGGTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNttacgttcgattggttcgattgcgatttttgttcgaagttgtt
caattgacaccgtctggccatTGCGATTTTCGTTCGAAGTTATTCGGTTG
ATGACACCGTCTGGACAAACTCAGTAGTAAAAACATGTTTGCCTTTTTTG
GCTTTGCACTGAAGACTTTTCGCATTTCCAAGgcgataaaaatatttttt
tatcaaaggcaaaaataagaacatctacGTATCTGATCGGATCTGATTCA
TACTTTACCCCCAATGGTCCTGTCGTCCTGTTTCAGCTCTGGTTTTTATT
GTCTGTGTCTGCTGCCGCCTGGTGTTTTAAGGGTTTTCGCTTCCTCTTTT
CATTTttcgcatttttttgtttacgaaTTGGCTCGATGTCTCAGTtgcaa
aaataatctttaattcAGGAATTCTTTTGATAAGTGAGACAAAACCCTCC
TTGCGGACCTAGGATCTGACGCCGAAGAATAGGTCAGTCACATGTCCCGA
AAAAGGAGAAAGTAAGAACACTTGTCTCGATGGTTTTTCTATCTTCTTCA
TCCCCGTGAACCTTTTCGAAAGTAGGCAAGTCAAAAATTGCCCGTGTTGA
AGGCCTTTGGTATTTTGCTTTGGCAAGCTTCTCCCGACTGGTGAAACTTC
AAAAGAATTTCGAAAGAAGTTCTCAATACCATAATAATTACATCCTTGGA
ATTGTTCATAATTACACATCGACTTAAATATTAGAATGGCAGAAGATCCC
AGAATTGACACCAGTCGTATTGATCCTAAACCACAAAGTATATCTGAAGC
ATACGCTGTTCCtgcaaattttttagaaattgatGTGTGTAGTCCACAAA
CACATGGTGTTGGTAAAAAAAGATATACAGATTATGAAGTACGAATGAAG
GTAAAATTGTTTAATTCGATAAATTTCTAGAAATCTGGTTTTTTACCTCC
TCCAACAATTAAGATCAATTGCGATCGATTGTGCTAATTTTCTGTTATGT
ATGATCGCTACTCTGTctgtgtaccagagtgtatctcacaaTAATATCGT
AGCGTactttaagagaagaaatttttgcggaatttaatttcgcggttcac
agctcaaaattctgAAGTTTCGAGGGAATTCAATTTCGCGGTTGAGGCCA
AATACCACGACTCTCGACATGGCTcaagaattctcgggccaaaactttta
ttggaatgcgCATAAAGCCGGAGGATGGCCCGAGCATGGCCCGAGTTTTC
GGGTCGTGGGCGGGCCTCACGCGAGCCACACGCGGGCTAACTTTTGAAAT
CATGATTTAAAcccgcgtgtaatttcaggactgcattttttcaatatttt
ctctagaaaaacttgatttcactTANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTATTAACGC
ATagccaaaattctgcataattaatTTCACTCTAATTATTGCAGGTGATC
AAGCCTTGGACACAAGAAAAATTAGACaggaaagttttatttttgataaa
cttctttctttcaaaaacacaaattaAAGGGATCTTCGTCATCCTCCTCT
GGCTCCTCCAAATCAGCTAATGATTGTTAATACATTAGACAATCTATATG
TAATATATATTACACAAGCCTTTAACGCGTACTTAAAACACTTGAATATC
ATAATTAATTGTTCTCTAGTTTTTCACGCGTAGCgtcgaaaataattatt
tattgccaagcgttaaattagaaaaaccacggTAGGGTTGCGTTTTTAGC
GAATATAAAGaaatcgatattaatcgataACAATCAAAAGCAATCAGCGA
TTAATTGATAGCaatcgataacaatcgaatCCAATCGATAAGAACGTAAA
GTCTTAGTATCGTCACTATCGATaattatcgattaaaatcgattaatatc
gattgATTTCCCGTATCGATTTCATCGATTGGGTACGCCTGGTTTATAAG
GGCGTACCCTCTGAGACCTAaacttaggatcccgtagggatcgGGGATTT
ATCCTGGTAGGGGCactggtagggttgggagctttcttgataaaggtctg
taaatttcatgctataagtatttgtgaatgacagctttCTGCCGTGTCTT
GTTGGCGCAAGCAGCGTGATTAGGCATTGGGTATGttaaccaaggttgct
tgcattcgGTTGTTCCAGCTGGGGTTGGAGAACTatcgtgagattgggta
acttgcatcagtggaggctaacatgcacaGTCAGGACCTCacttcacttt
atcgatattactcaaacggcagtgtgcgctaaattattttggtttcgctt
tcgatttcaagagaaggtcttagcaacagggctgggtagaaaaatctaaa
catagaattcaaaaaaaatattgatcatcgtatagagcaccaAAAAATat
cccctttctatgtttagtttgctCTACCTtagattataactgaaaatatc
ttcaaataacctttgtccgctatcagccgGCGCAGTAATCTTTGCCCGtt
ccaattcttagataatgaataagagaggtgcgcttagctaagccgtgctc
gcgggtGATAACTTTATGTTTACttctcttgtatattttagtggtattta
tccaatgaaaaggatattgacaaaatatgcacggcattgattatgacatc
attaaatttGTCAGTGTCGATTCAATatatagttctttttatcgtgaaat
ttagaaatacaaacaaaaaagaatcaaatttaatatttgtttcctatgta
gattatattagcgttagaatacggtaaattttcacgaaaaatattgcgcg
atggcggtacgcccaatcgcgcccacaggaaagttccaatttttaattat
cgggaaatcagggaaaccggttcaccttGTGGATAAAAaagtacggaatg
aaacctgacagaaggttttcgactagatttattcagataaagctataaga
ggttcattacttgtggattttaaaacttacataagcaaaaacgaaagttg
ttgggaaggaaagagtaaacacaagacagaaggtttggttgtattgatca
ggtatgtttttattctatctgaACTAATATTGAGACCCTGACtgaacatg
catagccctcaaatgaaagacctggctggtcattaaaatacaaagttaaa
tcacatcaaaaatggtagagtagagctgcgagcggagctgcgtagttgtt
attttaatgaccagccaggtcttttatttatttgggggctatgcatgtta
gcctccactgatggaAGTTACCGAATCACACGGTATTTCACGGGTacagg
caaatttcagaaaaatacttagaaaacacttgagaaagtcagaaaatctg
gatagaagataggaaagtagaaaataggggggggaataagagaggatgca
tcctcctggtggatgatatcgtttgccaattgttttagagataggaataa
tattaAGGTTAGAATCACtgataaatttctttttcctcTCTGGACGCTAA
GCAACAAAATATAGTTTCCATCAGCCATTCCAACCTTCCTgctattccta
tctctaaaaagAAGGGTGACTGGATGATTTTAAGAGGTATGTCAACATTT
ATTTAGACCaagttactcttaggtgccaaataaacggcccctcccgcttg
ttaatttttcaatttttttccaacccccccccccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAAGAATAATATGTCA
ATATTGTGTTTTAGTTTAGTATTATTTATTGACCCTGACTGAAAATAAAT
AGAATAGGATAGAAAATTAGACAAAATACATCAAATAGTACGATAGCAGA
TCAATAAGTTTATGTCTACAATTGTTCATTTgatgtcagttaggaacatt
tggcaagTTCCCTTCAGCTTGGGAAATACTGTGTATTTCCATTTAAAGAA
ATGACATGCAAGTCAGGGGTAATACATCGTTTAGTAGTGTCAACTGCGCA
cgcgtccaaacaattttccttaataaccccttacaaaaaaaaaaagtcaa
aacgcaatttaccttacctcctgagtttgtttttgttatgctaaaatata
acaaacctttgtcatgctgtctaattacaaaaacctccaatccCTACTTC
TCTGCCATCTAGTTTTactttaaatgccgtgttttaaaattcctttgcta
cattatatgtacggaaaaggttttctccaggttttttcaatcccgggatt
aaactacgaggACAGTTCCGCCTGCTTATTTTCCTTTCCACGTTGAGCCC
CGGGGCTACTTAACAATAAAGAGATTTTATTGATTAagagattaatgttg
aaatgcGTATTTTTTCGATTAAATTAGGcaatactcaacaaaaaataagg
tggttttaaacaaatctttgacaagttggcgtttctttctgttctaatat
atgcaaatcacgttGAGAAAAGAAcatatttccgcctttactttcgcttt
cgtgttaGGCGAATCTGATTGGattgattggatgaataccgctcgctaac
aaattctgattggctgtaagtctttagcttcgggattctgattggatcat
ttctTGCGCCACGGTTGAACTTTGAatggttgaaagtttctgagcttgaa
ttctgattggatgaatacctgaaaagtaaacaatagtatgtaagtatttt
gcttatcaaaactGTAACTATGCCCGGGGcacccgttgctaagaccttat
tttaaaaacgaaagtgattaccgcaaaaattcatcaaaaatagcgatttt
cgtaatagctcaaatattgatacttgactgtactggtcttagcctggata
tccaggctgtaaactatttcacagcctagtcattctttttcttttcatat
gCTTTTATATGTAATAATGAACATTCATGTTTAAAGctacttaaatatat
agatagatatagATGCAGTTCGCTTGCTTgtgctcacttcgctaaagccg
taaagGCCAATCTACACTACATGACGCAGAGAAATTCTGCAACAAAAATA
TGGTAACCCTCTACttactaccgtcaactgctcttacttgggacgattgg
tcacaACATGGggctgttgatatctggcctgtattttcacttactgttaa
ttTAACAgtaatctctttgacaacaaatttgttttgataactccaccaag
tttatcaatcatactttctgtcatagcatttcacgataactttcactgat
agcgcgccctttttaacttttttgttttcattaaaaatgacTGGACGCCG
ATTGCAGAATTAGACAACGCCCACCGCTTAACTGCCTATCGctcgatggg
attaacaaataacaactGTGTAACTTGTAACTTAAGGTAAAGCATCATCA
AATCAGAaaggattctttgaaaaatcacactcgcatcaaattcccgcttt
cgtTTTGAGaactaaagataagaaaaaattcaatccTTAGAATCaacgat
tgaaacaaataaagttaTATGACAACTGGCCGAAAAGCCATTAGTGGCAA
AAATTAGGTTAACTTTCATTATACACGGCAATCTCAtcagtttaaaaaaa
ctttctgaTGGAGCGAATTTTTAAtgcagatttcaatataaaaattGCGT
GGGGAATACTTCTGTCAATCTGTTGTTAACtatgtaccgtaagttggtct
attgtctacatccctcttctaattccaaCATCCAGTtttagataggaata
atagtaaggtcggaatcactgatagacaaaagattttttcctctctggTG
GCTAAGAAAAGAAATATAGTTTCCATAAGCCATTTTGACCTTTcttttcc
tatctctaaagaagggtgtcaggaTTACAAGAGGGATgccaacattagac
caagttacggtaagctttttattatattgttggaatagaaaagagaaaag
aggtaCGTCTAGCCTAGTCTAATTGTCAGCCGTCAGGATGAATGTGAATG
AGCTTATTcgtatcaaaaataaaacacaGGGAATTTCCCAAGCTGCCTGT
AACCGgctgcaatcaaaaaaatcataactgcACTCATAAAAACATACATT
AGCGTCTTTGTTTACCATTTTATGCCTTGACGATAGATGTCGATATGGTG
CGCCAAAGTGGAAATAAATACTAGTTTCAAATATAGCCCCTTTGCGGGGC
TTTGACGTTAATATACAGGCCAGTTAAACAAATTAATGAAAATCAGGTTA
TTTCttaaaagatagtatcgttttatcAAAGATAATATCGTTtcaaaaaa
gatagtattgttttgaCAAAGATAGCACTgtcattttaaaaagatagtat
ttatttttgGTTTGGTNCCCTTAGAATCaacgattgaaacaaataaagtt
aTATGACAACTTGCCGAAAAGCCATTAGTGGCAAAAATTAGGTTAACTTT
CATTATACACGGCAATCTcatcagtttaaaaaaaactttctgatgGAGCG
AATTTTTAAtgcagatttcaatataaaaattGCGTGGGGAATACTTCTGT
CAATCTGTTGTTAACtatgtaccgtaagttggtctattgtctacatccct
cttctaattccaaCATCCAGTtttagataggaataatagtaaggtcggaa
tcactgatagacaaaagattttttcctctctggTGGCTAAGAAAAGAAAT
ATAGTTTCCATAAGCCATTTTGACCTTTcttttcctatctctaaagaagg
gtgtcaggaTTACAAGAGGGATgccgacattagaccaagttacggtaagc
tttttattatattgttggaatagaaaagagaaaagaggtaCGTCTAGCCT
AGTCTAATTGTCAGCCGTCAGGATGAATGTGAATGAGCTTATTcgtatca
aaaataaaacacaGGGAATTTCCCAAGCTGCCTGTAACCGgctgcaatca
aaaaaatcataactgcACTCATAAAAACATACATTAGCGTCTTTGTTTAC
CATTTTTTGCCTTGACGATAGATGTCGATATGGTGCGCCAAAGTGGAAAT
AAATACTAGTTTCAAATATAGCCCCTTTGTGGGGCTTTGACGTTAATATA
CAGGCCAGTTAAACAAATTAATGAAAATCAGGTTATTGCttaaaagatag
tatcgtttcaTCAAAGATAATATCGTTtcaaaaaagatagtattgttttg
aCAAAGATAGCACTgtcattttaaaaagatagtatttatttttgGTTTGG
TGTGCCATAtcatatgccgacatgagcgACCACAGAGCTTACAGTGGTCG
AAATAAGCTTTTTCATTGTGATTGGTTATTTTAGACCGTGTTTAGTGTCA
CCTGAAGAGCAACCATGGTTCAGGCTGAGgggtagaaaattttgaaaatt
tgcccctcatatttggcttaaaactgtttcattttgatgttatcaattat
ttaattttttacttGCCTTCTGATGGCTGATCATATTGGGTGTTTTGTTA
CCACTCTCGACGCAGCAGGCTACCGCaatttatcgatattttttgctgag
taaGGAGTTTTTTAGCATATTTACCCATTTAAAACATGAATTATCTCGTG
ATCTAGATGCCgggaaatttaaattttttagttGCTTTATCGGACCCTGT
TTCTTGTTGGATAGTAAGGACTTGATGTCTTTGtcttgcttgattttatt
gacaaaTGTTTTCttagtctgtacacagacccgatatctatggctaattt
caaaattcattaccgtggagggtctgttgtcattgtcttttctcgtttga
gatttttcaaaccaagcgctgcgatggagtgctgtTGAGGTTTGGCAAAA
AATGGAAGGCGATAAGAGAAAATGGCCGTCAGAATTGTCAGAAAGTATAG
AAGTTTgttgaaaaaaagtgtttcatAACAAAACTGGCTTCTTATGTTTT
ATTAATTGGAATGGAAGAGAGCTCTAAATGAAGGcattctattgcaaaat
aactctttttgcacaaatcgaatgttttttgtttacattttggatttttg
agttCACGAACGTGAGAAAGAAGTTGTTTGATTGGaatcttgtttttaaa
gtggttttaacttcagttctttgcAAAAGAATATACTCAAAGTATCTCTG
TATGTTTTTATGATCAAATTCAGTATTACTTTTACGGCATATAATCTATG
TAGAGTGGCTATAGTGTTTTTTTGGCATGGCTTTTGTAGAAAATGTTTAT
AATATAGGGTAATGGGAAAATAATTTTCGTTGGACAATTTTGTCTTCGtt
acttttcagcttttagtttggctcaaaaacattaaaaactaAAAAGCAGC
CAAAACATGTTTAGAAAAGTGACCCTCAATCATGGACCCCACCCCTTTGT
TTACAGTTGTCGTAGCTTTGGCTgccatttttgttaaaattataCTTCAT
CGAAGAGGTCTCCTTAcgggaaaatttttatcaaacagacaatgcgcaca
gaatGAACTACGCTatgataatcgtgagatacactctggtacagagtaat
gTTTTCCAGGCCAAAGGATTGTACTTTTCAGTAACTTATAGATGAAAGAA
GAATAAAAACTCTTTTACATCAAGCATCATACCCACATATTACTCATGTG
AAGCATCTAAGCAAATCGAAAAGGTATAAAGATATGNCAAAACATGTTTA
GAAAGTTGACCCTCAATCATGGACCCCACCCCTTTGTTTACAGTTGTCGT
AGCTTTGGCTgccatttttgttaaaattataCTTCATCGAAGAGGTCTCC
TTAcgggaaaatttttatcaaacagacaatgcgcacagaatGAACTACGC
TatgataatcgtgagatacactctggtacagagtaatgTTTTCCAGGCCA
AAGGATTGTACTTTTCAGTAACTTATAGATGAAAGAAGAATAAAAACTCT
TTTACATCAAGCATCATACCCACATATTACTCATGTGAAGCATCTAAGCA
AATCGAAAAGGTATAAAGATATGTCCACTCATTTCTActcatgttttttg
ttttcagaccAATATCCCGATATTCAAACAAAAAGAATCCAGTGTGCGTC
GAAGATATAGCGATTTCGAATGGGTGCGATCGGAGCTAGAACGGGATAGT
AAAGTAAGTATTCTTTCATATTTGACGAATTAATTATCTTAAAAAGACGA
CTTCAACCAGTGTATACCCGCgggtttatcgttctacatctgaaATGCGA
GCTTTATTAAGCTTGTTTGACGTCAAACGATACTTCACAATCATCAGCCG
GTTTGAGAGAAAAGATTAGTGAAGAGCGCCTATCGAAATTTCTTCCCAAA
CACCATAACACATCAAACTAGTGTTACACTTGCAGATGATATCCGTTCAC
GTCAGATACCAATAGAGTCACCCATCTTTCGTGGTAGACGGATTTCGGAC
AATAATTTTAAACCAAAAACTTTCAATCATTTACGTCTAGATTCGTAAAA
CCTTTTTACAATACTGAAGATGTTCAATTATTGGTGTTTCTATTCATTCA
ATTCATTCATCTTGTTACAAAATCTTGTTtgtaaatctttttaaaattct
tCTTGACAGATTGTAGTCCCATCATTACCGGGTAAAGCGTTAAAGAAAAT
GTTACCGTTTCGCGCAGACGATGGTAAGTATGACTTTTAATAGTATAGTT
TTGTACGGAAATCGATGAGTGCGATTAATCAGACGTCACGAATAAGGATC
ATACTACGGTGTTTGTTCTTATCACACGCCTGAAACTGGGAAGTCTATGG
TAAGATGACCAGAATCCTTCGAGAAaattgttttatcaaaaaatggAGTG
GGTTTCAAAAACAACCATAAAATCTTCGCAAACTACCTTTTTAAACAAAC
AGTAACCTGTCACCTTTTCAGGTATTTTCGAGGACGAGTTCATTGAAGAA
CGAAGACAAGGCCTTGAAGGGTTCATTAACAGGTAAGCAACCATACAGTA
GACTATCCATAACTTGAATGACCAAGGAGTTCAATGTTTTACAGACACAA
AATACCTATCGTTACGGTTAGAGGGTCAATTTGTAAAAGTGTCACTTACT
ATGACAAAAATTCTATCTTCAAACTATCTTCAAACATAAGATTCTCTTTT
TAACCCAAATGACTCTTGTTTAATTAACTGAAATGAATACCTGGTGGACT
TTTggtcaaaatagatgaaattgGGAACTGAAATTAATTACGGCCTAATT
CGATTGATTTACATTTAGCTTTTCTTTGCTTTCTGTCTCGTGTCTTACTT
TGACTGAGCATGCGTCACTGTGATGTTTTCACGTTTCAAACCTTGACCAC
ATTGAAACAATTAACAATGATTATTAAGTATTGTTATTAAGTACTTTGAC
AATCATCAGATATCTCGATTGAGACTTAAACCTTACGAAATCAATATTTA
AGACTCGTCTTAATtggcttttactttttttgtgaaTTACTTAGTGAATT
TTTTcatatctttttttaattttaatctcATGTATTTCATGTAATCGTTG
CTATTCATTTCCGTTCATTATCAAGTCTTAATTGGATTTCTTCTCGTGCA
TGTTCTGTTTTGAATAAATATAATTGTAAGGGTGATGCTGAAATGAGATC
TCCTTATGAAATCATTGAATTGATCActcttttaaaaaagatatttgaga
ACGGTTATCAACAATCTCCCAAttagtttttcaaacttatctTAGGTGAA
TAACACTTTTTACTTTCATACAACGGAACATAtgtcttttcaatttttac
atTATAGACGATCTTTCTAATTTTCTTGCAGAGTTGCTGGCCATCCATTG
GCACAAAACGAACGTTGCCTTCACATCTTTTTACAAGAAGCAATCATCGA
TAAAAATTACGTCCCTGGTAAAATACGCAACGTGTAATCTACGCATGCGC
AGTAGTAGGTTTTTATCACACAGTGAATCAATTCAAAACACACTCTTCTT
CCTTTAAGTAGATATGTCATTTTTGTCTTTCTTTCCTACTCAATATAAAA
CTGTGTAGGTAAAAATCCAAAagctttcactttcgttttacTGGTTGAAA
TCATGACAAAATGACTTTTTCGAAGAATTTGTCTTTTTGGTACAAAAgca
agtcttttatgttttctttcatattattcgacgttgaaatcatttttttt
ccaTATAGATCAAAAATCAGTCATGAAAAAATGACTTATTAATTTAGTCC
TTTCTGTTGTCCTTCATATATCCTGTTTTGAACCAGTAAAATACTGAGCA
TTGAAAGCTTTTGAGAGATCTACCTTTTTAAGTTATATCTTgtattgtaa
ttttttataCATCAATGTTATGGAAAATTGAATTTGTTTCTCCTCAAACT
TGACATCTCAATGAACTTATACTAATTGACTGATGatgctgaattttttt
taaatgatgaaaTGTAAAACACCCGAGGGTAATAAGGCGTATATAtattt
gtaaaagatttcttttttttttgcggaATTTACTTTAATTGTAGAaataa
atatttgataaaataaacATCAATACACTTCTTAATATAATCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012449XLOC_012449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022192-exon-sc0000408-1491911889:98023..98314TCONS_00022192-exon-sc0000408-1491911889:98023..98314Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1510915933:98023..98314TCONS_00022192-exon-sc0000408-1510915933:98023..98314Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1575043694:98023..98314TCONS_00022192-exon-sc0000408-1575043694:98023..98314Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1491911889:100176..100222TCONS_00022192-exon-sc0000408-1491911889:100176..100222Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1510915933:100176..100222TCONS_00022192-exon-sc0000408-1510915933:100176..100222Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1575043694:100176..100222TCONS_00022192-exon-sc0000408-1575043694:100176..100222Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1491911889:109030..109125TCONS_00022192-exon-sc0000408-1491911889:109030..109125Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1510915933:109030..109125TCONS_00022192-exon-sc0000408-1510915933:109030..109125Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1575043694:109030..109125TCONS_00022192-exon-sc0000408-1575043694:109030..109125Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1491911889:109582..109645TCONS_00022192-exon-sc0000408-1491911889:109582..109645Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1510915933:109582..109645TCONS_00022192-exon-sc0000408-1510915933:109582..109645Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1575043694:109582..109645TCONS_00022192-exon-sc0000408-1575043694:109582..109645Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1491911889:109894..109954TCONS_00022192-exon-sc0000408-1491911889:109894..109954Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1510915933:109894..109954TCONS_00022192-exon-sc0000408-1510915933:109894..109954Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1575043694:109894..109954TCONS_00022192-exon-sc0000408-1575043694:109894..109954Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1491911889:110804..111567TCONS_00022192-exon-sc0000408-1491911889:110804..111567Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1510915933:110804..111567TCONS_00022192-exon-sc0000408-1510915933:110804..111567Clytia hemisphaericaexon
TCONS_00022192-exon-sc0000408-1575043694:110804..111567TCONS_00022192-exon-sc0000408-1575043694:110804..111567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:98023..111567 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.5824	82.1456	107.488	118.892	230.031	183.642	158.681	166.618	24.234	24.3784	22.2991	25.8479	27.7805	31.286	30.0781	27.9501	22.9018	24.96	22.0183	25.8472	34.9372	35.5423	42.0129	40.0847	95.3126	101.376	57.4972	42.6841	34.1504	37.107
Blast
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BLAST of TCONS_00022192 vs. Swiss-Prot (Human)
Match: SNX12 (Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 1.722e-70
Identity = 113/159 (71.07%), Postives = 137/159 (86.16%), Query Frame = 1 
Query:  175 MAEDPRIDTSRIDPKPQSISEAYAVPANFLEIDVCSPQTHGVGKKRYTDYEVRMKTNIPIFKQKESSVRRRYSDFEWVRSELERDSKIVVPSLPGKALKKMLPFRAXXXXXXXXXXXXRRQGLEGFINRVAGHPLAQNERCLHIFLQEAIIDKNYVPGK 651
            M++    DT R++ KPQ +++AY  P+NFLEID+ +PQT GVG+ R+T YEVRM+TN+PIFK KES VRRRYSDFEW+++ELERDSKIVVP LPGKALK+ LPFR D+GIFE+ FIEERRQGLE FIN++AGHPLAQNERCLH+FLQE  ID+NYVPGK
Sbjct:    1 MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGK 159
The following BLAST results are available for this feature:
BLAST of TCONS_00022192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX121.722e-7071.07Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=... [more]
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