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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022190 ID=TCONS_00022190|Name=TCONS_00022190|organism=Clytia hemisphaerica|type=transcript|length=2025bp
TAAATATTGATTATAAGAATTATCGCTGTTTAGAAAATCAATTGGgagat
ttttttaagaaacgcCGTTCCGATATTCTATACAACTTTGACGTTATTTT
TGGTCCCTTTATTTCTTCTCTATTTTGGAGAATGGCTAAACAGTAAGTTT
ATTTATAATAATAgtcttttaaagggacataacagtacttgtgaaatttg
aaaacaagctgtatgcagcggatacaaaatcaaaacaaatgtcacatgtc
aaaataaaaaatcaaaccaaattcGGCTaaatttgattgttcaattgttt
tacaagtttgttttggacacgcgNAATTCGGCTAATTTTGaatgttcaat
tgttttacaagtttgttttggacacgcgattttaattgttctctttaatg
acacatGGTTCGCGCGATGTTtatattttactactttaatgtccctttaa
gtgtGTCTGTAAAAGCGCTTAATTCGAAATATACACGATTGAAATCAAAG
GTTTCCATATAGTTTAAGCAGTGTAAACCATCCACCCCAAAgacaaaata
tctcaaaaccaaaattgaaaactaaaaaaaagaaTCCGCTTATGAATGAA
AGCAAGCTAAAAAGTATGAAAAACTGAATTATCAGATTAACAATTTCAAG
CAAGGGTGACTAGGCTAGGTAATCAGTATTTCCAAAAGTGCCGGAGTAAA
AATCAGGCGTCATTCCTTAAATCGTTGGCGAAAAAAACCAACTGAATAGA
TGTGCACAAGAACTTACTATAAACATCAGTTTCGTCAACAATTTCATCTT
GGATGATTTCTTCAATGATATCTTCCAAAGTGACGATTCCGATACATTCA
TAGAAGGGATCACCATCTCCTCCATCATTGATCTTCAATACAAGTGACAT
GTGTGAACGACCTTGTTTGAACTCCTCTAAAGCTTTATCCAAACTGGTAT
CATAGAACACTTTGTGGACTGGATGGTTGTAGAATTTCAACACACTCAAC
AATGGGATGCAATCATCAGGATCAACAAACGCTAGATCTTTAACGAAGAG
GACAGCAACTAGATTGTGTCGTTCACCAGAATATACTGGGATTCGACTGT
AACCACTTTTAACAATCGAAGACATTGTTTTAAAATCCAAGATGGCTTCT
TCGTCTAACAGGAAACAATCGTCAATGGCTGTCATCACTTCAGATACTGT
TTTGTCTTTGTACTTCAACGCACCAGAGATGATGCCAACTTCGTCTTGCT
CCAaatcattgaattcattctgaatGTTTAACAACTCCAATAATTGCTTC
TTGGAATATACATTTCCGATCTCCTTGCCAAGGATGCAATCGAGAAGTTT
ACTGATTGGGAAAGAGAGCGGGAAGGTAAGGATCATGAAAAGTTTGGTCA
TGTTGATGGTGAACGCACCAACTGCTAAGCCATAACGGGAACAAATACTT
TGTGGTACGATCTCACCAAAGATGACAATAGCCATTGTTGAACCAACAAC
TGCAACGATACCACTGGTCAAACTGTCCAACAAAATAGTGAAGGATGAAT
TGACTAACGTGTTACCTAGCAACAATGTACACAGGAGGAAATTCCCTTGA
CGACGAACAGGTTCAATCTTTTTGGCATATCTCTTTTGTCGAGGTGTTCC
ACTCTTAGAAACCAATTTCAATTCTTGGACATCCAGAGCCATCAGCCCGA
GATTCAAACCAGAGAACATTCCAGAGAGAACCATGAGGACACCAATCAAA
ATGATTTTTGCCCATATTGGCATCAGTGTTTCCTTCTTCTCGATGACCAA
CATGACTGTTTTGTCTTGGTGAATCCAGGTGGTAGTAGTTCCATTTTGTG
AAAGATCTTTAGTACAAAGGTATGCTTTCCCTACATTTCGAGCCTACAAA
GTAAACAGAACACGATGTTTTAGATTTGTTTCTAGATACAAGGTTCATAG
AAAAATTGTCAGGTCGATTTTCAATATGGAAAGGTGGAACATGTAATTTT
ATTATTCCTAAATCTTTTGGAAAAG Run BLAST on NCBI transcript from alignment at sc0000408:41514..44868+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022190 ID=TCONS_00022190|Name=TCONS_00022190|organism=Clytia hemisphaerica|type=transcript|length=3355bp|location=Sequence derived from alignment at sc0000408:41514..44868+ (Clytia hemisphaerica)
TAAATATTGATTATAAGAATTATCGCTGTTTAGAAAATCAATTGGgagat
ttttttaagaaacgcCGTTCCGATATTCTATACAACTTTGACGTTATTTT
TGGTCCCTTTATTTCTTCTCTATTTTGGAGAATGGCTAAACAGTAAGTTT
ATTTATAATAATAgtcttttaaagggacataacagtacttgtgaaatttg
aaaacaagctgtatgcagcggatacaaaatcaaaacaaatgtcacatgtc
aaaataaaaaatcaaaccaaattcGGCTaaatttgattgttcaattgttt
tacaagtttgttttggacacgcgNAATTCGGCTAATTTTGaatgttcaat
tgttttacaagtttgttttggacacgcgattttaattgttctctttaatg
acacatGGTTCGCGCGATGTTtatattttactactttaatgtccctttaa
gtgtGTCTGTAAAAGCGCTTAATTCGAAATATACACGATTGAAATCAAAG
GTTTCCATATAGTTTAAGCAGTGTAAACCATCCACCCCAAAgacaaaata
tctcaaaaccaaaattgaaaactaaaaaaaagaaTCCGCTTATGAATGAA
AGCAAGCTAAAAAGTATGAAAAACTGAATTATCAGATTAACAATTTCAAG
CAAGGGTGACTAGGCTAGGTAATCAGTATTTCCAAAAGTGCCGGAGTAAA
AATCAGGCGTCATTCCTTAAATCGTTGGCGAAAAAAACCAACTGAATAGA
TGTGCACAAGAACTTACTATAAACATCAGTTTCGTCAACAATTTCATCTT
GGATGATTTCTTCAATGATATCTTCCAAAGTGACGATTCCGATACATTCA
TAGAAGGGATCACCATCTCCTCCATCATTGATCTTCAATACAAGTGACAT
GTGTGAACGACCTTGTTTGAACTCCTCTAAAGCTTTATCCAAACTGGTAT
CATAGAACACTTTGTGGACTGGATGGTTGTAGAATTTCAACACACTCAAC
AATGGGATGCAATCATCAGGATCAACAAACGCTAGATCTTTAACGAAGAG
GACAGCAACTAGATTGTGTCGTTCACCAGAATATACTGGGATTCGACTGT
AACCACTTTTAACAATCGAAGACATTGTTTTAAAATCCAAGATCGCTTCT
TCGTCTAACAGGAAACAATCGTCAATGGCTGTCATCACTTCAGATACTGT
TTTGTCTTTATACTTCAACGCACCAGAGATGATGCCAACTTCGTCTTGCT
CCAaatcattgaattcattctgaatGTTTAACAACTCCAATAATTGCTTC
TTGGAATATACATTTCCGATCTCCTTGCCAAGGATGCAATCCAGAAGTTT
ACTGATTGGGAAAGAGAGCGGGAAGGTAAGGATCATGAAAAGTTTGGTCA
TGTTGATGGTGAACGCACCAACTGCTAAGCCATAACGGGAACAAATACTT
TGTGGTACGATCTCACCAAAGATGACAATAGCCATTGTTGAACCAACAAC
TGCAACGATACCACTGGTCAAACTGTCCAACAAAATAGTGAAGGATGAAT
TGACTAACGTGTTACCTAGCAACAATGTACACAGGAGGAAATTCCCTTGA
CGACGAACAGGTTCAATCTTTTTGGCATATCTCTTTTGTCGAGGTGTTCC
ACTCTTAGAAACCAATTTCAATTCTTGGACATCCAGAGCCATCAGCCCGA
GATTCAAACCAGAGAACATTCCAGAGAGAACCATGAGGACACCAATCAAA
ATGATTTTTGCCCATATTGGCATCAGTGTTTCCTTCTTCTCGATGACCAA
CATGACTGTTTTGTCTTGGTGAATCCAGGTGGTAGTAGTTCCATTTTGTG
AAAGATCTTTAGTACAAAGGTATGCTTTCCCTACATTTCGAGCCTACAAA
GTAAACAGAACACGATGTTTTAGATTCGTTTCTAGACACAAGGTTCATAG
AAAAATTGTCAGGTCGATTTTCAATATGGAAAGGTGGAACATGTAATTTT
ATTATTCCTAAATCTTTTGGAAAAGGTTATATTAAACCTTatgattaaga
aaaagaaaaatctaatAGTTTTATACAAAAAATAGAGCTCATTATAATCT
TAAAACAAATCTCTTAAAACAGATCCACATGTCACGAGACATTTTTTGTA
TGATAAGGAGGCCATCGATCAATCATCACATCAACACTTTATCAATAGAA
CAAGAAAATTTGATGACTCGATGACAATTTCGTTAATTGGTTACAACATT
GAGTTGCAATCGTGAAACTGAAACAGATTTGTTGATTTTGTCTGGTAGGT
AGTAGGACTTGCTATTGAGAAATTATAAAAACAGAATTTAAAACGATTTC
CCAATAATAAGTCTACCATGATTAAATTTCTCTAGCGAGGTATATTTGCG
ATAAGCCTTAAATCANTGGGATTCGACTGTAACCACTTTTAACGATCGAA
GACATTGTTTTAAAATCCAAGATGGCTTCTTCGTCTAACAGGAAACAATC
GTCAATGGCTGTCATCACTTCAGATACTGTTTTGTCTTTGTACTTCAACG
CACCAGAGATGATGCCAACTTCGTCTTGCTCCAaatcattgaattcattc
tgaatGTTTAACAACTCCAATAATTGCTTCTTGGAATATACATTTCCGAT
CTCCTTGCCAAGGATGCAATCGAGAAGTTTACTGATTGGGAAAGAGAGCG
GGAAGGTAAGGATCATGAAAAGTTTGGTCATGTTGATGGTGAACGCACCA
ACTGCTAAGCCATAACGGGAACAAATACTTTGTGGTACGATCTCACCAAA
GATGACAATAGCCATTGTTGAACCAACAACTGCAACGATACCACTGGTCA
AACTGTCCAACAAAATAGTGAAGGATGAATTGACTAACGTGTTACCTAGC
AACAATGTACACAGGAGGAAATTCCCTTGACGACGAACAGGTTCAATCTT
TTTGGCATATCTCTTTTGTCGAGGTGTTCCACTCTTAGAAACCAATTTCA
ATTCTTGGACATCCAGAGCCATCAGCCCGAGATTCAAACCAGAGAACATT
CCAGAGAGAACCATGAGGACACCAATCAAAATGATTTTTGCCCATATTGG
CATCAGTGTTTCCTTCTTCTCGATGACCAACATGACTGTTTTGTCTTGGT
GAATCCAGGTGGTAGTAGTTCCATTTTGTGAAAGATCTTTAGTACAAAGG
TATGCTTTCCCTACATTTCGAGCCTACAAAGTAAACAGAACACGATGTTT
TAGATTTGTTTCTAGATACAAGGTTCATAGAAAAATTGTCAGGTCGATTT
TCAATATGGAAAGGTGGAACATGTAATTTTATTATTCCTAAATCTTTTGG
AAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022190-exon-sc0000408-1491911889:41514..42636 | TCONS_00022190-exon-sc0000408-1491911889:41514..42636 | Clytia hemisphaerica | exon |
| TCONS_00022190-exon-sc0000408-1510915933:41514..42636 | TCONS_00022190-exon-sc0000408-1510915933:41514..42636 | Clytia hemisphaerica | exon |
| TCONS_00022190-exon-sc0000408-1575043694:41514..42636 | TCONS_00022190-exon-sc0000408-1575043694:41514..42636 | Clytia hemisphaerica | exon |
| TCONS_00022190-exon-sc0000408-1491911889:43967..44868 | TCONS_00022190-exon-sc0000408-1491911889:43967..44868 | Clytia hemisphaerica | exon |
| TCONS_00022190-exon-sc0000408-1510915933:43967..44868 | TCONS_00022190-exon-sc0000408-1510915933:43967..44868 | Clytia hemisphaerica | exon |
| TCONS_00022190-exon-sc0000408-1575043694:43967..44868 | TCONS_00022190-exon-sc0000408-1575043694:43967..44868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000408 | supercontig | sc0000408:41514..44868 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022190 vs. Swiss-Prot (Human)
Match: CNNM2 (Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=1 SV=2) HSP 1 Score: 425.246 bits (1092), Expect = 3.182e-136 Identity = 213/339 (62.83%), Postives = 279/339 (82.30%), Query Frame = -1
Query: 826 TTWIHQD--KTVMLVIEKKETLMPIWAKIILIGVLMVLSGMFSGLNLGLMALDVQELKLVSKSGTPRQKRYAKKIEPVRRQXXXXXXXXXXXXXLVNSSFTILLDSLT-SGIVAVVGSTMAIVIFGEIVPQSICSRYGLAVGAFTINMTKLFMILTFPLSFPISKLLDCILGKEIGNVYSKKQLLELLNIQNEFNDLEQDEVGIISGALKYKDKTVSEVMTAIDDCFLLDEEAILDFKTMSSIVKSGYSRIPVYSGERHNLVAVLFVKDLAFVDPDDCIPLLSVLKFYNHPVHKVFYDTSLDKALEEFKQGRSHMSLVLKINDGGDGDPFYECIGIVTL 1833
TTWI+ D T M+V E+K+ L+P W ++I I +L+ LSGMFSGLNLGLMALD EL++V GT ++K YAK+IEPVRRQGN+LLC+LLLGN LVN++ TILLD + SG+VAVV ST+ IVIFGEIVPQ+ICSR+GLAVGA TI +TK FM++TFP S+P+SKLLDC+LG+EIG VY++++LLE+L + + +NDL ++E+ II GAL+ + KTV +VMT + DCF++ EAILDF TMS I++SGY+RIPV+ GER N+V +LFVKDLAFVDPDDC PL ++ KFYNHP+H VF DT LD LEEFK+G+SH+++V ++N+ G+GDPFYE +GIVTL
Sbjct: 231 TTWIYHDGEDTKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRVTDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTL 569
The following BLAST results are available for this feature:
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