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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022182 ID=TCONS_00022182|Name=TCONS_00022182|organism=Clytia hemisphaerica|type=transcript|length=1182bp
tcatttgttttgaaattttgatgctttgattggtcagtcattggaggggt
atgcatgttagcctccactgatgcaagctacctgacttcacggtacGTTG
TCTAATTCCATCgtagcaactatctggtcttcAAAATGTTTATACATGGA
CATGTTCATAAATGATGAGTAAATATTGGCCTTTTGGAAACATTTGAAAT
GACTGTTACAATTTTACtttatgataaaaatgtaacaaaatttcAGAGGT
CCTCACTGCTGCAGTGGTTAAGCTATGTAGCTATGGAGGTTTGTTTCAGG
GTCagtgaaatgataaaaaagtaacaagtaagaaataaataaaatgataa
aaatggccATAACTCATGAAATATGTATTTTAAAGATGTGAAAATGTTAC
ACATCACACGGACCTACATTAGACCTACATTATAGACCTCTCACGGACCT
ACATTAGACCTCTACACGGAGCTCTTGcgaatgaatgaaaaagaatggca
acaatcgatgaaaaatccactgaaaatgctgaaaaatatggATCCTGTAC
CGCCAATAAATGCTTCACaaatgaaataataaaggaTAATGACATGTTAC
AATGTAGGAAATGCCAGAGATTCGTTCATTATGCTTGTTCAGAGCTTCCC
GCATACCAAATTCAGCTTTGTCTGCAATACAAAAGCCGACGCttcgaatg
taaaaaatgtGGTACAGTCACGCCAatacttttggaaaaaaacaaaacaa
gtaaGCAAAGAGTCAGAAGTAACCAAATAACGCAAACAATAACGGAAGCA
GAATGTCAAGATGGAGGTCAGCAAATATTTGAATCTGTTTTCAACACTAG
ATTGCATAATCTAGAGAAGAAAATGGAGGAACTTATAGCTATGAACAAAG
AAGATGTCGCTAAAGAACCAAAACGGGCAACATATGCAGATATCAGAAAG
GAAGAGGTGAAGAAACAGGAGGTTATCAtcaagaaattcatcaaaaatga
aaaagaagaaagagaagaagatcGCTGGAAGAACTTAACTAGATGTAACA
TCATTGTCCATCATTTAggtgaaaataaagatgaaaataaagatgagaAC
AAAGAGGAACAGCGGGCCGGTGACAAAGATTACGTGGAGGAAGTTGTAGG
AAATCGTATGGGATTAAAGATAAATGTTGTCA Run BLAST on NCBI protein sequence of TCONS_00022182-protein >TCONS_00022182-protein ID=TCONS_00022182-protein|Name=TCONS_00022182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MATIDEKSTENAEKYGSCTANKCFTNEIIKDNDMLQCRKCQRFVHYACSE
LPAYQIQLCLQYKSRRFECKKCGTVTPILLEKNKTSKQRVRSNQITQTIT
EAECQDGGQQIFESVFNTRLHNLEKKMEELIAMNKEDVAKEPKRATYADI
RKEEVKKQEVIIKKFIKNEKEEREEDRWKNLTRCNIIVHHLGENKDENKD
ENKEEQRAGDKDYVEEVVGNRMGLKINVV Run BLAST on NCBI transcript from alignment at sc0000406:129466..130647 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022182 ID=TCONS_00022182|Name=TCONS_00022182|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at sc0000406:129466..130647 (Clytia hemisphaerica)
TGACAACATTTATCTTTAATCCCATACGATTTCCTACAACTTCCTCCACG
TAATCTTTGTCACCGGCCCGCTGTTCCTCTTTGTtctcatctttattttc
atctttattttcaccTAAATGATGGACAATGATGTTACATCTAGTTAAGT
TCTTCCAGCgatcttcttctctttcttctttttcatttttgatgaatttc
ttgaTGATAACCTCCTGTTTCTTCACCTCTTCCTTTCTGATATCTGCATA
TGTTGCCCGTTTTGGTTCTTTAGCGACATCTTCTTTGTTCATAGCTATAA
GTTCCTCCATTTTCTTCTCTAGATTATGCAATCTAGTGTTGAAAACAGAT
TCAAATATTTGCTGACCTCCATCTTGACATTCTGCTTCCGTTATTGTTTG
CGTTATTTGGTTACTTCTGACTCTTTGCttacttgttttgtttttttcca
aaagtatTGGCGTGACTGTACCacattttttacattcgaaGCGTCGGCTT
TTGTATTGCAGACAAAGCTGAATTTGGTATGCGGGAAGCTCTGAACAAGC
ATAATGAACGAATCTCTGGCATTTCCTACATTGTAACATGTCATTAtcct
ttattatttcatttGTGAAGCATTTATTGGCGGTACAGGATccatatttt
tcagcattttcagtggatttttcatcgattgttgccattctttttcattc
attcgCAAGAGCTCCGTGTAGAGGTCTAATGTAGGTCCGTGAGAGGTCTA
TAATGTAGGTCTAATGTAGGTCCGTGTGATGTGTAACATTTTCACATCTT
TAAAATACATATTTCATGAGTTATggccatttttatcattttatttattt
cttacttgttacttttttatcatttcactGACCCTGAAACAAACCTCCAT
AGCTACATAGCTTAACCACTGCAGCAGTGAGGACCTCTgaaattttgtta
catttttatcataaaGTAAAATTGTAACAGTCATTTCAAATGTTTCCAAA
AGGCCAATATTTACTCATCATTTATGAACATGTCCATGTATAAACATTTT
gaagaccagatagttgctacGATGGAATTAGACAACgtaccgtgaagtca
ggtagcttgcatcagtggaggctaacatgcatacccctccaatgactgac
caatcaaagcatcaaaatttcaaaacaaatga Coding sequence (CDS) from alignment at sc0000406:129466..130647 >TCONS_00022182 ID=TCONS_00022182|Name=TCONS_00022182|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000406:129466..130647 (Clytia hemisphaerica)
GACAACATTTATCTTTAATCCCATACGATTTCCTACAACTTCCTCCACGT
AATCTTTGTCACCGGCCCGCTGTTCCTCTTTGTtctcatctttattttca
tctttattttcaccTAAATGATGGACAATGATGTTACATCTAGTTAAGTT
CTTCCAGCgatcttcttctctttcttctttttcatttttgatgaatttct
tgaTGATAACCTCCTGTTTCTTCACCTCTTCCTTTCTGATATCTGCATAT
GTTGCCCGTTTTGGTTCTTTAGCGACATCTTCTTTGTTCATAGCTATAAG
TTCCTCCATTTTCTTCTCTAGATTATGCAATCTAGTGTTGAAAACAGATT
CAAATATTTGCTGACCTCCATCTTGACATTCTGCTTCCGTTATTGTTTGC
GTTATTTGGTTACTTCTGACTCTTTGCttacttgttttgtttttttccaa
aagtatTGGCGTGACTGTACCacattttttacattcgaaGCGTCGGCTTT
TGTATTGCAGACAAAGCTGAATTTGGTATGCGGGAAGCTCTGAACAAGCA
TAATGAACGAATCTCTGGCATTTCCTACATTGTAACATGTCATTAtcctt
tattatttcatttGTGAAGCATTTATTGGCGGTACAGGATccatattttt
cagcattttcagtggatttttcatcgattgttgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022182-exon-sc0000406-1491911889:129466..130647 | TCONS_00022182-exon-sc0000406-1491911889:129466..130647 | Clytia hemisphaerica | exon |
| TCONS_00022182-exon-sc0000406-1510915933:129466..130647 | TCONS_00022182-exon-sc0000406-1510915933:129466..130647 | Clytia hemisphaerica | exon |
| TCONS_00022182-exon-sc0000406-1575043694:129466..130647 | TCONS_00022182-exon-sc0000406-1575043694:129466..130647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000406 | supercontig | sc0000406:129466..130647 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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