TCONS_00022173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022173
Unique NameTCONS_00022173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022173 ID=TCONS_00022173|Name=TCONS_00022173|organism=Clytia hemisphaerica|type=transcript|length=207bp
TGTTAATTCTTTGTTAATAATTTCCCAGTCAATTTTATCACTTTGGAAGT
TGTAGAGGTCAAATTTGCTTATTAAGTTACGTTCTTCAGTTTCTCCGAAA
TTTGATTATCAAAATTCAGATGTGTTGTAACATCTACAACAAGATGATCT
GAATAAATAGTAGGTGAGCATGTGTAATTAAATACAGTGTCTGTGTTGTT
TGTGAAT
Run BLAST on NCBI

transcript from alignment at sc0000406:3398..3604

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022173 ID=TCONS_00022173|Name=TCONS_00022173|organism=Clytia hemisphaerica|type=transcript|length=207bp|location=Sequence derived from alignment at sc0000406:3398..3604 (Clytia hemisphaerica)
ATTCACAAACAACACAGACACTGTATTTAATTACACATGCTCACCTACTA
TTTATTCAGATCATCTTGTTGTAGATGTTACAACACATCTGAATTTTGAT
AATCAAATTTCGGAGAAACTGAAGAACGTAACTTAATAAGCAAATTTGAC
CTCTACAACTTCCAAAGTGATAAAATTGACTGGGAAATTATTAACAAAGA
ATTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012434XLOC_012434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022173-exon-sc0000406-1491911889:3398..3604TCONS_00022173-exon-sc0000406-1491911889:3398..3604Clytia hemisphaericaexon
TCONS_00022173-exon-sc0000406-1510915933:3398..3604TCONS_00022173-exon-sc0000406-1510915933:3398..3604Clytia hemisphaericaexon
TCONS_00022173-exon-sc0000406-1575043694:3398..3604TCONS_00022173-exon-sc0000406-1575043694:3398..3604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:3398..3604 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.0255	0	15.3504	3.33732	8.12573	6.0947	19.2673	18.131	5.07758	0	6.10464	8.75639	4.00737	3.12127	1.71074	0	0	3.47719	14.2953	3.35131	1.45645	6.39365	3.45436	1.57026	3.23466	8.38352	10.3277	13.2264	8.3598	10.2208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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