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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022156 ID=TCONS_00022156|Name=TCONS_00022156|organism=Clytia hemisphaerica|type=transcript|length=3540bpRun BLAST on NCBI protein sequence of TCONS_00022156-protein >TCONS_00022156-protein ID=TCONS_00022156-protein|Name=TCONS_00022156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=807bp MADENNVVSTTSEISTEQTVDESGNAVTVTTEVITETIVVTEGAEGQAAGRun BLAST on NCBI transcript from alignment at sc0000406:161985..177800+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022156 ID=TCONS_00022156|Name=TCONS_00022156|organism=Clytia hemisphaerica|type=transcript|length=15816bp|location=Sequence derived from alignment at sc0000406:161985..177800+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000406:161985..177800+ >TCONS_00022156 ID=TCONS_00022156|Name=TCONS_00022156|organism=Clytia hemisphaerica|type=CDS|length=46056bp|location=Sequence derived from alignment at sc0000406:161985..177800+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022156 vs. Swiss-Prot (Human)
Match: ACBG1 (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Homo sapiens GN=ACSBG1 PE=2 SV=2) HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0 Identity = 294/652 (45.09%), Postives = 403/652 (61.81%), Query Frame = 1
Query: 532 ADAEDYYTTKRDGSYKIQFSGREGHITNRPAISVEEFMDQAVKSYGTRVAMKVERDGKWISWTYKEYFEEIKTAAKGFIKLGLEPYNGVGIIGFNSPEWLFSDLGAIYAGGLATGVYTTNNPEACQYVCSDANCNIVVVENDVQLQKILQVWDQLPALKAVVQYLGEVSEKRDNIYSWNEFMEIGRKENEDELNKRIDMQSPNRCCTLIYTSGTTGNPKGVMMSHDNIIIATE--GVIEQLHPAINVNSNVQETCISYLPLSHIAAQMTDVWIPIRAGAVVWFAKPDALKGSLSTTLQQARPTLFVGVPRVYEKIEEKIKGIGANVKGVKRKLADWAKGVSLTANTNKERGASTPFGYSVAS-MFLKKVSKALGLDRAKFIWTAAAPISKSTLQYFQSINLPLNEIYGMSETAGALTMGVPGKCRITSIGTIMPEAEYKIANPDEDGSGELCFRGRMNFMGYLNNLEKVKETIDEENWLHTGDVGKIDKDGFFYITGRIKELIITAGGENIAPVPIEDEIKTELPFIGTAMVIGDKKKFLSCLLTCQVEIDLDTGLAKDNLQASAVHYLKSIGVEATKAEDLTTDMPEVLKTAIQTGIXXXXXXXXXXXXRVQKWKLLPIEFTTAGGELGPTQKLRRPHVMKMYKETIDAFY 2478
A E +TT+ DG +++ + +V +A+ YG +A+ +R KW +Y +Y+ + AAKGF+KLGL+ + V I+GFNSPEW FS +G ++AGG+ TG+YTT++PEACQY+ D N+++V+ QL+KIL++W QLP LKAVV Y K N+Y+ EFME+G + E+ L+ ID Q PN+CC L+YTSGTTGNPKGVM+S DNI + PA QE +SYLPLSHIAAQ+ D+W I+ GA V FA+PDALKGSL TL++ PT +GVPRV+EKI E+I+ + A ++RK+ WA V+L N PF +A + L KV +ALG + + + AAP+ T +F +N+ L YG+SET+G M P R+ S G ++P K+ N D +G GE+C GR FMGYLN +K E IDEE WLHTGD G++D DGF YITGR+KELIITAGGEN+ PVPIE+ +K ELP I AM+IGD++KFLS LLT + +D DT DNL A+ + + +G AT ++ E + AI+ GI N A + +QKW +L +F+ +GGELGPT KL+R V++ YK ID+FY
Sbjct: 76 APEEALWTTRADGRVRLRIDPSCPQL----PYTVHRMFYEALDKYGDLIALGFKRQDKWEHISYSQYYLLARRAAKGFLKLGLKQAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSSPEACQYIAYDCCANVIMVDTQKQLEKILKIWKQLPHLKAVVIYKEPPPNKMANVYTMEEFMELGNEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDIRPA----EVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQNLTCPGSDLKPFTTRLADYLVLAKVRQALGFAKCQKNFYGAAPMMAETQHFFLGLNIRLYAGYGLSETSGPHFMSSPYNYRLYSSGKLVPGCRVKLVNQDAEGIGEICLWGRTIFMGYLNMEDKTCEAIDEEGWLHTGDAGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISNAMLIGDQRKFLSMLLTLKCTLDPDTSDQTDNLTEQAMEFCQRVGSRATTVSEIIEKKDEAVYQAIEEGIRRVNMNAAARPYHIQKWAILERDFSISGGELGPTMKLKRLTVLEKYKGIIDSFY 719 The following BLAST results are available for this feature:
BLAST of TCONS_00022156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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