TCONS_00022142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022142
Unique NameTCONS_00022142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022142 ID=TCONS_00022142|Name=TCONS_00022142|organism=Clytia hemisphaerica|type=transcript|length=877bp
ATGTGCAATCTGATACTTTAGCTCAAGGATTTGGTTCCTTGGGACTCATG
ACAAGTGTGTTGCTCCACCCTGATGGAAAGACAATCGAATCTGAAGCTGC
ACATGGAACAGTCACCCGCCATTACCGCGAGTACCAGAAGGGTAACCCAA
CCAGTACCAACCCCATTGCTAGCATCTATGCATGGACGCGCGGTCTCGTG
CAACGtgcaaaccttgatgaaaacgATGATTTGAATACTTTTGCTCTCGC
TCTCGAGAAAGCCTGCGTTGACTGCGTGGAAGCTGGACAAATGACCAAAG
ATTTGGCTGGATGTATCTATGGATTGAAAAACGTCAAACCAGAGCATTAT
CTACTCACAGACGAATACTTAGATGCTGTCCGACAAAAACTCATGGAAAT
CTGGACTCCACCACAAGCCTAAATCTCGGACACTCAAATTTTTGTAACGA
ACTAATTCTACATCGAATTTTTTACATTAcataaaaaacatgttttatat
acacattttttggaatttttactGGCAAAGAATGAATATTGTGTCGGTAG
CAGGGTAGGTATACTATTTAGTTTTTTAAGGATTCATTATTGTTTaggga
tttttttgaaattttttgttctTTCTTGTGGCTAACCCATATCTTGTAAA
TAGTTTCGTCAATCATTAACTTTCTTTAATACTTTTTGTTCGGTTTTTGT
CCCCTCACCCAAGAAGTTTTAGCTCACTTTAAAACGcgttttatttaatt
tgtaGCAATTTTGTAGTAACCTTTTTTGTATTTAGTAGTCCTGAAAGACA
ATTATATACATCCAATATTCAAATAAATCGAAAGCTGCGATTACTTTTGA
AAACTCCTTGATACTTTTCTTGACATC
Run BLAST on NCBI

transcript from alignment at sc0000406:17045..19420+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022142 ID=TCONS_00022142|Name=TCONS_00022142|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0000406:17045..19420+ (Clytia hemisphaerica)
ATGTGCAATCTGATACTTTAGCTCAAGGTTAGTTAAATTCACAGTCATCT
ATATTTAagaaacatgttggaaatttgaagcaaaataatacGCCATCTTT
AATGAAGTGAAGCCATAATTCAGCTAGCACGAGCCTTGACATTTGTCATT
ACAGTGTCCAACTGCCTGCCATTTTGTATTATACCAgggtttttctaatt
ttcttgaACACTATCTCAGGTCAAGAATAATGATCTTAGAGCATAATTGG
ATCTTAATGGTACGGCTCAAAACTTAAACAAACACATGATTTGCTGAGAT
AATATTCAACAATCTGATTCTTTTGCGCCGTATAATTGGCGCTTATTGTT
TGCGATTCTACATCTAAGAGACTTAGAACTCGAAACTTCCCATGATTCAA
TCGTATTCAACTCTTTTTGCAGGATTTGGTTCCTTGGGACTCATGACAAG
TGTGTTGCTCCACCCTGATGGAAAGACAATCGAATCTGAAGCTGCACATG
GAACAGTCACCCGCCATTACCGCGAGTACCAGAAGGGTAACCCAACCAGT
ACCAACCCCATTGCTAGCATCTATGCATGGACGCGCGGTCTCGTGCAACG
tgcaaaccttgatgaaaacgATGATTTGAATACGTAAGAATAATTCGTTT
CGTTTTTGGTTTACTTTTGCCAGTGTTAGAAGTATTTCCGTCTCATACAG
ATTtcagtctcagtgaaaaatatAAAGAGGCTTGTCTGTCTTAAAATTCT
GCTTAaggtaccaaaatttcaagaatatattctttgccacggaaagtcac
gtgacatctttttcaaccaataagatttactaatttcgagggtaaaacaa
GCACTATATGGTTTAAAtcactaaaagattatgtttactgaaaacacata
attaatctttagtaagtgttctgttgtaccccagttctgacgtcatgccg
tggcGAAGAATGCTTATTTGGAGTATTGTAAAATCCAATCTCTTTTTTCA
CTATTATGTCAGCTTCAGATCTTGGCCAGATAATCAAGCTTCTAAGGCTT
AATCTATTTGTATAGAACCCCTAAAGAAAGGTTTTTGTAGTATTTTATTA
TATAGGGTTTTATCTTACATAAAACAATTCCCTTGCAAGTTCATCGAATA
TGACTTATAAGGGATAGCACTATTCGTTCAAGATTTCCCAGTAGCATGTA
CTACTGCAGTAGTTTAATTTGATGAATAATACATTATGGATTACCCTTTT
TCAGTTTTGCTCTCGCTCTCGAGAAAGCCTGCGTTGACTGCGTGGAAGCT
GGACAAATGACCAAAGATTTGGCTGGATGTATCTATGGATTGAAAAAGTA
AGTTTGATTTCTTTGCTCCTTGTGATGtgtctttaaactttttttagttt
ttgagctCCGTCATATAACAAGTTATTTTCAGGTGAAGGTAAGATATGCA
ATGTCTGCCGGTAGGACGGGATCAGGCCTGGTCACCAGACCAAAGTAATA
AGTACGAAGAAATCTGTGTTTCGCTTAATATGAAGAGCTGATAGAATAAC
CATCGTAGAATTTCCACCGGTTgtgatcactgacctttataattATATCC
CTGGATATATACCCCAAATTTGATCGAAAcctttttgaattggtacccgt
aaaaaagccattgcagtgttaaaaattagggaaagtagatctagcgctct
cgatgcatttacaccgctattgagtagtgtcGCCATTacggtaccacttt
tcaaaaaatttgagaaacttggtccagggtatataaaggtcagtgttgtG
ATATACTTTTTCAACTAATTCTCTTTCTAGCGTCAAACCAGAGCATTATC
TACTCACAGACGAATACTTAGATGCTGTCCGACAAAAACTCATGGAAATC
TGGACTCCACCACAAGCCTAAATCTCGGACACTCAAATTTTTGTAACGAA
CTAATTCTACATCGAATTTTTTACATTAcataaaaaacatgttttatata
cacattttttggaatttttactGGCAAAGAATGAATATTGTGTCGGTAGC
AGGGTAGGTATACTATTTAGTTTTTTAAGGATTCATTATTGTTTagggat
ttttttgaaattttttgttctTTCTTGTGGCTAACCCATATCTTGTAAAT
AGTTTCGTCAATCATTAACTTTCTTTAATACTTTTTGTTCGGTTTTTGTC
CCCTCACCCAAGAAGTTTTAGCTCACTTTAAAACGcgttttatttaattt
gtaGCAATTTTGTAGTAACCTTTTTTGTATTTAGTAGTCCTGAAAGACAA
TTATATACATCCAATATTCAAATAAATCGAAAGCTGCGATTACTTTTGAA
AACTCCTTGATACTTTTCTTGACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012421XLOC_012421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022142-exon-sc0000406-1491911889:17045..17071TCONS_00022142-exon-sc0000406-1491911889:17045..17071Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1510915933:17045..17071TCONS_00022142-exon-sc0000406-1510915933:17045..17071Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1575043694:17045..17071TCONS_00022142-exon-sc0000406-1575043694:17045..17071Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1491911889:17467..17677TCONS_00022142-exon-sc0000406-1491911889:17467..17677Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1510915933:17467..17677TCONS_00022142-exon-sc0000406-1510915933:17467..17677Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1575043694:17467..17677TCONS_00022142-exon-sc0000406-1575043694:17467..17677Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1491911889:18299..18391TCONS_00022142-exon-sc0000406-1491911889:18299..18391Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1510915933:18299..18391TCONS_00022142-exon-sc0000406-1510915933:18299..18391Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1575043694:18299..18391TCONS_00022142-exon-sc0000406-1575043694:18299..18391Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1491911889:18875..19420TCONS_00022142-exon-sc0000406-1491911889:18875..19420Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1510915933:18875..19420TCONS_00022142-exon-sc0000406-1510915933:18875..19420Clytia hemisphaericaexon
TCONS_00022142-exon-sc0000406-1575043694:18875..19420TCONS_00022142-exon-sc0000406-1575043694:18875..19420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:17045..19420 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
281.288	276.233	319.278	321.043	62.8763	46.7755	55.393	61.315	83.2151	85.5181	99.9062	94.8517	136.744	126.707	215.095	244.933	170.717	166.161	40.2217	45.9012	91.8476	96.1019	134.222	128.822	48.0246	59.0455	96.6061	74.405	96.9959	72.3786
Blast
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BLAST of TCONS_00022142 vs. Swiss-Prot (Human)
Match: IDHP (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.066e-57
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 3 
Query:    3 VQSDTLAQGFGSLGLMTSVLLHPDGKTIESEAAHGTVTRHYREYQKGNPTSTNPIASIYAWTRGLVQRANLDENDDLNTFALALEKACVDCVEAGQMTKDLAGCIYGLKNVK-PEHYLLTDEYLDAVRQKL 392
            VQSD LAQGFGSLGLMTSVL+ PDGKTIE+EAAHGTVTRHYRE+QKG PTSTNPIASI+AWTRGL  R  LD N DL  FA  LEK CV+ VE+G MTKDLAGCI+GL NVK  EH+L T ++LD ++  L
Sbjct:  315 VQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445
The following BLAST results are available for this feature:
BLAST of TCONS_00022142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDHP1.066e-5772.52Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
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