TCONS_00022131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022131
Unique NameTCONS_00022131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022131 ID=TCONS_00022131|Name=TCONS_00022131|organism=Clytia hemisphaerica|type=transcript|length=504bp
CAAGAGTCTTGGATGATTAAAATGATTGCCTTctatttgttaatttttca
aaatatatttggctGTCTTTAGATGTTCATTTAAGTTATTAAAAGTATGT
AAGTTATTATttgactaaaaatttgaatatttttcaaaatccctGTTTAT
TAGATGACACCTAAAAGGACAAAAGACATTGGTCTGTGCCCAGATGAGTT
TTGGTTACAATGAACTAATAGGCCGAAAggtaaaaagtttgaaaaaatag
gcttttaaagaaaaagggctggttaatttcaaaataatatattttctttG
TAAAGAGAAAGGTCAAAGCTCTAAAGCTTTAAAAAACCAGTTTGAAAGAG
AACTTCTTCGTGTTATACTCAAGCACTAAAAACTTAGCAATCCTACAGTA
GTAGTGTAAAGATAACCGAAGGACAAGAGCAATGATGGGAAATTCCTCAA
tagcaaaagattttcaaacaCCACTGAAAGGTGTAAAACTTGCCCTTTTA
GCCC
Run BLAST on NCBI

transcript from alignment at sc0000405:162559..163062

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022131 ID=TCONS_00022131|Name=TCONS_00022131|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at sc0000405:162559..163062 (Clytia hemisphaerica)
GGGCTAAAAGGGCAAGTTTTACACCTTTCAGTGGtgtttgaaaatctttt
gctaTTGAGGAATTTCCCATCATTGCTCTTGTCCTTCGGTTATCTTTACA
CTACTACTGTAGGATTGCTAAGTTTTTAGTGCTTGAGTATAACACGAAGA
AGTTCTCTTTCAAACTGGTTTTTTAAAGCTTTAGAGCTTTGACCTTTCTC
TTTACaaagaaaatatattattttgaaattaaccagccctttttctttaa
aagcctattttttcaaactttttaccTTTCGGCCTATTAGTTCATTGTAA
CCAAAACTCATCTGGGCACAGACCAATGTCTTTTGTCCTTTTAGGTGTCA
TCTAATAAACagggattttgaaaaatattcaaatttttagtcaaATAATA
ACTTACATACTTTTAATAACTTAAATGAACATCTAAAGACagccaaatat
attttgaaaaattaacaaatagAAGGCAATCATTTTAATCATCCAAGACT
CTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012410XLOC_012410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022131-exon-sc0000405-1491911889:162559..163062TCONS_00022131-exon-sc0000405-1491911889:162559..163062Clytia hemisphaericaexon
TCONS_00022131-exon-sc0000405-1510915933:162559..163062TCONS_00022131-exon-sc0000405-1510915933:162559..163062Clytia hemisphaericaexon
TCONS_00022131-exon-sc0000405-1575043694:162559..163062TCONS_00022131-exon-sc0000405-1575043694:162559..163062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:162559..163062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.169028	0.0600895	0	0.286276	0	0	0.481133	0	0	0	0	0.141183	0	0.401719	0	0.661209	0	0.139223	0	0.318222	0.620655	0.1217	0.376091	0	0	0	0	0	0.176179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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