TCONS_00022109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022109
Unique NameTCONS_00022109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022109 ID=TCONS_00022109|Name=TCONS_00022109|organism=Clytia hemisphaerica|type=transcript|length=1027bp
AAATATACAATTACAGAAGATGATGAAGACTTCACAGATGTCTCTGATGA
ATTACTGtgttcgaattctatcaaacaTTACGCATTAGACATTAATCATT
TTAAACATACGTACGCATTCGGTATCGCACAATTTGATTCAATCGATGAA
TTATCCGAACATTTTAAATGTATGCCAGTGCTTGGCAGTGAATCAGGAAC
TTCGGTGACACTCAGACACCCATATAAACACGACATTCCAGAACCAACTC
AATATGAACACGTAGTCAGACACGCTGAACTTGGGAAGCAAACATCATTC
AATCAAGACATGGCGAAACCATCACCAGATCTACATATAGCTTCAAAAGA
AGGTTATCTCATCAAGAGAGGTGCAATTCATAAAAACTGGAAGAAAAGAT
GGTTTGTCCTGCAAAAGAACTTATTAAaatattacaaagaaaaagaggaA
TCGACTCCAATTAAGACCATCGATTTAGTTGACGCAATGCATGCAGTGGA
AGACTTCTGTGATGGACGAAATAATTGCTTCCGATTAGCCATGCCAACAA
GGATATTTTATTTTGTGGCTAGTTCACCTTCAGAAGCTAAATCATGGATT
GAACTTTTACAGTGGAAAATTGAATATTACCAAGAAAGGAAAACGAATCA
ATCGAAGACTCGTTTAAACAATAATGGTAGCACCAGTAGTGCTGGTAGTC
AAGGCAACAACGAGAACAACACGGCAACGTCAGGGTGGAACCAAAACGAT
TCTCTGTTTGTCTCTTTTCCAGCAATTCGTTGAAAACAGCTGGCGAATTA
GCGGAACATGCTGCATACCTTGGACAGCACTATAAGCAGTGATTGTGTTT
TTATGTAGAGAAAATTTATTTggacaaaaattaagaacacaaCGATGCTG
GCTATCGATACCCAAAGTTCTTTCAACAACCATTTGGCGTCAAAATAACG
TCCATAACGTCCGTACGTATACCGTCAGATAAACATTGAAATAATGTTAC
GAGTCAGCTAGTTACTGGAAATTGAGA
Run BLAST on NCBI

transcript from alignment at sc0000405:40498..46317-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022109 ID=TCONS_00022109|Name=TCONS_00022109|organism=Clytia hemisphaerica|type=transcript|length=5820bp|location=Sequence derived from alignment at sc0000405:40498..46317- (Clytia hemisphaerica)
AAATATACAATTACAGAAGATGATGAAGACTTCACAGATGTCTCTGATGA
ATTACTGTACTAATATTTTTTTCAAGTTTTTTGTATATTTTGATGTCAAT
GTCTGAGTCTAAATGAATGATACCTCTCTGAATTTTTACGAAAAATTCGT
GGACTTTCTCTAGCAAACTTTCAAGGGATCTTTTTTGGATTCTTAGTCCA
TTACAAAGGGTCCCGTACAAAATTCTGCTTCCGCCACAATAGATTCTATT
ATGGGAACTGTTTATGGGACACTTTGTATATCAAAAGGAGAGAGATTTTT
CTCATATGAGGTTCAGTCAGAAACACAGTATTTCTACTGAAAGTTTAAAA
TGGCGTACTATAACGTATTCTAGTATAACTTAGCATAGAGCCTATCTGAG
CAATCTGAGATTGTCTCTACAGCAATAGATTTTGAAATTTCCGTTTACAG
ACAAACTATAACGTTTTTCTTACTCCTTTTTACATACAGGTGTTCGAATT
CTATCAAACATTACGCATTAGACATTAATCATTTTAAACATACGTACGCA
TTCGGTATCGCACAATTTGATTCAATCGATGAATTATCCGAACATTTTAA
ATGTATGCCAGTGCTTGGCAGTGAATCAGGTTAGCTTTTACAGTTTTTTT
TACATGTACGTAGAATTTAAAAACCCTTTAACCCCCCCGGTACGTATTAC
GGTACTTTATACAGCACTTAATCTATTAGAAGTTTTTTTTCGAGAACACA
GAGAAGAAAATTATCACGAATTCAGCAAATGCTAACTTCAAAGTGAATTA
ATTCTTTGATGATAATTGTTGTTCAAAATATACTTTGTACTTTAGCCTAT
ATGTTAACAAACTTAAGATCGTTGAAACTGTCTTTCATCTGATTGGTTGA
TGTCATTTCTTAGAAGCAGACACTTAAAAGACTTTCAAATGAATGAATCA
ATGATAACACTTCATCATTTTTTTTCTATTCAAGTCTGTCAAATCACTTT
TGTTTTTCTAGGAACTTCGGTGACACTCAGACACCCATATAAACACGACA
TTCCAGAACCAACTCAATATGAACACGTAGTCAGACACGCTGAACTTGGG
AAGCAAACATCATTCAATCAAGACATGGCGAAACCATCACCAGATCTACA
TGTAAGTTTACCATTGAACTTACTACGTAATGAACTAATCAAGTCTTTTA
TTTAATGCCTGAAAAAATCAATGCAACAATTTATTTAACGGTCGTGTGCA
GGATTTTTGAAAATTACTTTTTATCAATTTTTAAGATGTGTACCTGATAA
GGTCGACTTTTGGTTATTTTGGACAATTTTTAGAATGGAAATTAGAAAAT
GTTTCAATTTTTCGTCTACATTTCGTCACTTTTCCTACTTTTCGGGCTGA
AAATGGAATTTTTTTTCTCGATTTTTCGTAACAATTTTTCCGAACATTCA
TATCTGACAGGGTCATCTTCTCAAACTCCCCCCCCCCCATACTGGGATTT
CGTCACACTGAGACACATAAAATATACAGTTTTTTCTATTTCTCACTTTA
GATAGCTTCAAAAGAAGGTTATCTCATCAAGAGAGGTGCAATTCATAAAG
TAAGCATTCTGAACAGAGGGTGTTACAGACACATTCATACCTCGGCCCCA
CTTGAAAATGTGTCCAAAATTACGTTCCCGATGGGAAAGATACCCTATAA
TTTCAGCCCCACTGGGAGTTCATTCCTTTAAGAAAGTGACGTGCTTACTG
CACGGAGTCTGATGTAAAAACTGATCTTTCGATATAAGATTACGGGCTCT
ATACAAAATGAATAAAATGCAGACCAAAGTGGTCTTTATAATATATCACA
ATCCCCATTCGAAATTCAATACGTAAGAAATTGCACTTCAAACTATCCCA
ACTGGATGTTTTTAACTTGGAACAATATAATTTCTATGCCTGCTGTAGAG
AAAAATTTCACTGAGGTTGTGAGACAGGGGTTTATCTGAAACTCATCTGG
CAACGATTGTGAATAAACTATTTCTTTTGAATAATTTTTTCCGAATTTCT
CTGTAGTTCGAACTATAATAATGACCTACTTAGATTTTAAAAATTTATTG
CAAAAGACACACAAAGCATTTTTAAATTTTAAGAAAAGTTTTACACTCTT
GATATCATTTTTAAAATTCATTGCTTATTTTCTTAGAACTGGAAGAAAAG
ATGGTTTGTCCTGCAAAAGAACTTATTAAAATATTACAAAGAAAAAGAGG
TTAGTCCTCCCTTTGTTGTGCCTAGACCTTTAGTTCGTCCAACGAACATT
GTGCCAAATCTATTTTCTGTTTAAGCAGTCATTTGAATCCATGTCATTAA
AATGACACGTGTAATGCGTAAGATAGTGGTCAATAAAGTCGTTGCATAAA
GGCCAGTCTCCACTTTCGCGCGAAGTGAGCGAAAATTTTTAACGTTTTTG
TAAGGTTATTGGTCGGTTGAAAAATGAAGCAATTCCATTGGCCAAAATTG
ACGTAACGGTTGAAAAAAGTTGAGCTTTCTGCAACTTTTTTTTGTTCACG
CGAAACTCTTTTATGACGTAATCTTTTCTTTAGGCAAAAAAGGTTGAGAA
AAAAACTGTCGCCCATTTCGCACGAAAGTGGATACCGGCCTTTAGAATTG
CAATATGACGTCACTTAGTTTAAGGAACTTAGAATGCCCATCGATATTAA
TCACATGCCCAAAATAAAATGGAATTCAATTTTTTCACCAGTATTTCCTG
ACCAGGTAGATATTCAATGACTTGAGTTCTTGGCCTCACCGTATATGAAA
ATCTTTGCAATTTGTCTGAAATTTGGTGGAGTTTTCCTTGGATTTTCCTT
GGATTTTCTTGGATTATTTGAAACGTTTTTTAAGAAAGTCAAGCTAAAAT
TTCATTATTTTTAATTTCAGGAATCGACTCCAATTAAGACCATCGATTTA
GTTGACGCAATGCATGCAGTGGAAGACTTCTGTGATGGACGAAATAATTG
CTTCCGATTAGCCATGCCAACAAGGATATTTTATTTTGTGGCTAGTTCAC
CTTCAGAAGCTAAATCATGGATTGAACTTTTACAGTGGAAAATTGTGAGT
GTTGATATTTTTTTCAATAATGCATTGTCGTTTGAGCTATAATAATTAGT
CTGGTCTAAGGGGTCGATATGACACAGTTGAGTGGAGTGACACACAGGAG
TTGGGCTAGTAAGTGGGCTAGTAACCACATGCTTTATAAACTGAATACTG
CTCAAAGAGATCAAAACTAGTGCAAAACTTCAAAATAACTTCCTTAACAT
CCATATTAAGTTTTTTTTAATATTGAAGCAACGTTGCGTACCAGCTTGTA
ACTCCCTATGTTACCTAGCAATTATATTGATTAAGAACTCTATTTTTTTT
ACTACCTAATCGGCCCTTTTGACACCAGCCTTATTACGCTGGCGTAATAA
GGGCTAGCGTAAAAAGGGTCGATAAGGTATAAACCTGGGAAAAGGTTTGT
TCGTTAGTTCTTCTTTAATTCGCTATTTTATCATTGGTTATGAATTTGTG
TTGGGTTAGAGGAACCAAGCTGAAACAGAACGTCAAATCTTAATTTTTTG
GTTTTGAATTACTGTGACTTTAGTTTTAGACAAATATTGTCTATATATAA
TTTGCTTAAACATCCGTTTTTTTTCTTAGGAATATTACCAAGAAAGGAAA
ACGAATCAATCGAAGACTCGTTTAAAGTAAGTGGGCCATACTGTTACTTT
AGTAAGGCTTGCAACACAACAATTGTTTGGTCACCTAGTCACATCAATAT
TTATCTGCATGTACTAAAAAGTTTAAGTGGCACGTGAAAATATTTTGAAT
AAAATGAAAGACCTAGGGATGAGCTTTAAACTAGTGGGTTCCCAGCTGGC
ACACAACGTTGTTTTAACGTTCATCTAACATTATATGGACGTTGTGAACA
TTAGATTAACGTTGAAACGACGTTGTGTGCAGGCTGGTTTGGGAATTTTT
ACAGCTTAGTATTCCGGATAAGATTCTTAAAATTATAATATTTTGCATAA
AGCAGATTTAGCAGATTTCAGTAAAGTTTTCCTATGGGAAGGAAATGAAG
GTCTGCACCCTGTTTTTTGACAATTTTCTTGTCTTTAGAAAGTTCTACCC
ATAAGAGAAAGAGTGAAGTTTCCTTTTCTGCTTTGCACTGCACTTTCAAA
CTGCAACTGTATTGCACACAAAACATATCACAAAATGTCATCAAAAATTA
TGCATGCGTATGCGTCAACCTGCAAATGTACCTAAACCGCTATACTTTTT
CAAGAATATGATACCTCATCCATAGCATTTTTTACTTAGAACCACACTCA
AGTATACCGTGAGTATCACAGTGCATGAATTTTACACTGTGACGACAGAT
AAATTTAAGAGAAAGCTAAACTGTGACGACAGATAAATTTAAGAAAAAGC
TAAACTGTGAAGACAGATAAACTTAAGAGAAAGCTAAACTGTGACGACAG
ATAAACTTAAGAGAAAGCTAAACTGTGACGACAGATAAATTTAAGAGAAA
GCTAAACTGTGACGACAAATAAATTTAAGAGAAAGCTAAACTGTGACAAC
AGATAAATTTAAGAGAAAGCTAAACTGTGACAACAGATAATTTTAAGAGA
AAGCTAAACTGTGACGACAGATAAATTTAAGAGAAAGCTACACTGTGACG
ACAGATAAATTTAAGAGAAAGCTAAACTGTGACAACAGATAATTTTAAGA
GAAAGCTAAACTGTGACGACAGATAAATTTAAGAGAAAGCTACACTGTGA
CGACAGATAAATTTAAGAGAAAGCTAAACTGTGACAACAGATAATTTTAA
GAGAAAGCTAAACTGTGACGACAGATAAATTTAAGAGAAAGCTACACTGT
GACGACAGATAAATTTAAGAGAAAGCTAAACTGTGACAACAGATAATTTT
AAGAGAAAGCTAAACTGTGACGACAGATAAATTTAAGAGAAAGCTAAACT
GTGACGACAGATAAATTTAAGAGAAAGCTAAACTGTGGTGCTCACGGCTC
ACGCTAGCTCAATTACCGAAACCCAAAATAGATCAATCACACTTTCAGCA
TGAATATACCTTATCATTTAATATTCTCTGTTTTTCACTTTGACGGAGTT
CCAAATTTACACTTCTATATCATCAAATCAAGGCTCAGGTTTTGCTATAA
TCATTTGCACATAAATCTTTTTTATATCTAGAGCATTGAGTCCAAAGCAA
AAGGCTCTAAGAATCTCCGACCTTTACTAAGCAAGAACAAGTGAAGCCTT
ACGATTTGATGCAAGGATTGAATTTAACGTTTTCTTTGTATTCACACGGA
ACATTTTTCGAAATTAAAATAGCTCGAATTTTAAAATAAAATATTAAAAA
TGCGTTCTAAATAACATGATCAAAACAAAATAATTGATGACGTTTTGTTA
TTGTTTTGCAGCAATAATGGTAGCACCAGTAGTGCTGGTAGTCAAGGCAA
CAACGAGAACAACACGGCAACGTCAGGGTGGAACCAAAACGATTCTCTGT
TTGTCTCTTTTCCAGCAATTCGTTGAAAACAGCTGGCGAATTAGCGGAAC
ATGCTGCATACCTTGGACAGCACTATAAGCAGTGATTGTGTTTTTATGTA
GAGAAAATTTATTTGGACAAAAATTAAGAACACAACGATGCTGGCTATCG
ATACCCAAAGTTCTTTCAACAACCATTTGGCGTCAAAATAACGTCCATAA
CGTCCGTACGTATACCGTCAGATAAACATTGAAATAATGTTACGAGTCAG
CTAGTTACTGGAAATTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012399XLOC_012399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022109-exon-sc0000405-1575043694:46262..46317TCONS_00022109-exon-sc0000405-1575043694:46262..46317Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:45689..45828TCONS_00022109-exon-sc0000405-1575043694:45689..45828Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:45167..45306TCONS_00022109-exon-sc0000405-1575043694:45167..45306Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:44719..44766TCONS_00022109-exon-sc0000405-1575043694:44719..44766Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:44069..44131TCONS_00022109-exon-sc0000405-1575043694:44069..44131Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:43224..43397TCONS_00022109-exon-sc0000405-1575043694:43224..43397Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:42592..42638TCONS_00022109-exon-sc0000405-1575043694:42592..42638Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1575043694:40498..40856TCONS_00022109-exon-sc0000405-1575043694:40498..40856Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:46262..46317TCONS_00022109-exon-sc0000405-1510915933:46262..46317Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:45689..45828TCONS_00022109-exon-sc0000405-1510915933:45689..45828Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:45167..45306TCONS_00022109-exon-sc0000405-1510915933:45167..45306Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:44719..44766TCONS_00022109-exon-sc0000405-1510915933:44719..44766Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:44069..44131TCONS_00022109-exon-sc0000405-1510915933:44069..44131Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:43224..43397TCONS_00022109-exon-sc0000405-1510915933:43224..43397Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:42592..42638TCONS_00022109-exon-sc0000405-1510915933:42592..42638Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1510915933:40498..40856TCONS_00022109-exon-sc0000405-1510915933:40498..40856Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:46262..46317TCONS_00022109-exon-sc0000405-1491911889:46262..46317Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:45689..45828TCONS_00022109-exon-sc0000405-1491911889:45689..45828Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:45167..45306TCONS_00022109-exon-sc0000405-1491911889:45167..45306Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:44719..44766TCONS_00022109-exon-sc0000405-1491911889:44719..44766Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:44069..44131TCONS_00022109-exon-sc0000405-1491911889:44069..44131Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:43224..43397TCONS_00022109-exon-sc0000405-1491911889:43224..43397Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:42592..42638TCONS_00022109-exon-sc0000405-1491911889:42592..42638Clytia hemisphaericaexon
TCONS_00022109-exon-sc0000405-1491911889:40498..40856TCONS_00022109-exon-sc0000405-1491911889:40498..40856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:40498..46317 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.739649	0.543735	1.12947	0	1.95396	2.43217	2.61196	3.63063	3.71153	2.81605	1.58213	2.78715	6.27873	3.78951	3.08876	1.18649	3.94197	3.57605	7.75878	15.4061	8.5309e-08	0.0162273	1.53662	1.75747	4.90319	6.97703	23.2129	19.9928	1.89678	0.788484
Blast
[Close]
BLAST of TCONS_00022109 vs. Swiss-Prot (Human)
Match: DAPP1 (Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide OS=Homo sapiens GN=DAPP1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.301e-37
Identity = 73/206 (35.44%), Postives = 116/206 (56.31%), Query Frame = 1 
Query:    4 YTITEDDEDFTDVSDELLCSNSIKHYALDINHFKHTYAFGIAQFDSIDELSEHFKCMPVLGSESGTSVTLRHPYKHDIPEPTQYEHVVRHAELGKQTSFNQDMAKPSPDLHIASKEGYLIKRGAIHKNWKKRWFVLQKNXXXXXXXXXXSTPIKTIDLVDAMHAVEDFCDGRNNCFRLAMPTRIFYFVASSPSEAKSWIELLQWKI 621
            Y + + +E     S  +   +S+KH+   + +  +++ FG  +F S+ +  +HF   P++GSE+GT + L+HPY   + EP+ YE V  H  +  QT   +D   P+    + +KEGYL K+G + K WK RWF L +N LKY+K++    PI+ +DL +      D+   R NCF L  P R FY  A +  EA  WI++L+WK+
Sbjct:   58 YLLRDSNETTGLYSLSVRAKDSVKHF--HVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETGTLMVLKHPYPRKVEEPSIYESVRVHTAM--QTGRTEDDLVPTAP-SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKL 258
The following BLAST results are available for this feature:
BLAST of TCONS_00022109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAPP11.301e-3735.44Dual adapter for phosphotyrosine and 3-phosphotyro... [more]
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