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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022098 ID=TCONS_00022098|Name=TCONS_00022098|organism=Clytia hemisphaerica|type=transcript|length=4269bpRun BLAST on NCBI protein sequence of TCONS_00022098-protein >TCONS_00022098-protein ID=TCONS_00022098-protein|Name=TCONS_00022098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp MFTKTRGKINMAGTRRKRKKITRPTRRKASSKKIKTDKDEHVQSEDETPIRun BLAST on NCBI transcript from alignment at sc0000405:200498..210978+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022098 ID=TCONS_00022098|Name=TCONS_00022098|organism=Clytia hemisphaerica|type=transcript|length=10481bp|location=Sequence derived from alignment at sc0000405:200498..210978+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000405:200498..210978+ >TCONS_00022098 ID=TCONS_00022098|Name=TCONS_00022098|organism=Clytia hemisphaerica|type=CDS|length=23310bp|location=Sequence derived from alignment at sc0000405:200498..210978+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022098 vs. Swiss-Prot (Human)
Match: WDR76 (WD repeat-containing protein 76 OS=Homo sapiens GN=WDR76 PE=1 SV=2) HSP 1 Score: 208.379 bits (529), Expect = 6.011e-56 Identity = 129/389 (33.16%), Postives = 199/389 (51.16%), Query Frame = 1
Query: 2263 VKMTKEDDESN---YSEIIQTWL-EEKPGTVKQEASEVEFSNYSKEINSLFVS--NCGKVTKSRICSIAIHPSESKTIAAFGDKQGAVGIWDVGSNAQCKGYPASEEVLVFEPHSSPINCLKFRTDDCTKLMSCSYDGTLRQGDFAKQKFTQVFAFDDSDNRCYSFSNPLNKPNIFLLSTSEGSVALIDSVSGKAEMESFILQK--NVKCIDCHPSNEYIFAAVGHDGTMGTWDIRNLKTKGTSNPIFVVKSFKTGSGLYFSPGTGNKLAYTSNDDTVRIFDVKKSGEFSKSASW--TLKHDNHTGRWLTPFRATWDPKTENCFVIGSMGHPRKLDVYSCVGPGRLEWIPLRDDNFG-----TVGSVNAFHPTKNILISGNSSGKAHVW 3384
++MT E+ E N + + TW KP + E +Y +N + +S KVT I S+A+HPSE++T+ A G K G VG+ D+ P + V VF PHS P++CL F + ++S SYDGTLR GDF++ F +V+ + S + F + ++ +G+++L+D + E ++ + HP + F G T +D R L ++ + I + + K+ + YFSP TGN++ T D +RIFD S S T++H+ TGRWLT F+A WDPK E+C ++GSM HPR+++++ G R +FG +V S+NA HPT+ IL GNSSGK HV+
Sbjct: 252 LEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDLTQQ------PKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFL--AEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTH-IYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFD---SSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGK--------RVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVF 620 The following BLAST results are available for this feature:
BLAST of TCONS_00022098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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