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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022015 ID=TCONS_00022015|Name=TCONS_00022015|organism=Clytia hemisphaerica|type=transcript|length=788bpRun BLAST on NCBI protein sequence of TCONS_00022015-protein >TCONS_00022015-protein ID=TCONS_00022015-protein|Name=TCONS_00022015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp MMKTRSTKECNDDIEDEHEDEKEHSDVEDAIKPFQCAFCGKKFQFPNNLIRun BLAST on NCBI transcript from alignment at sc0000401:90333..91120 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022015 ID=TCONS_00022015|Name=TCONS_00022015|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0000401:90333..91120 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000401:90333..91120 >TCONS_00022015 ID=TCONS_00022015|Name=TCONS_00022015|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000401:90333..91120 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022015 vs. Swiss-Prot (Human)
Match: Z658B (Zinc finger protein 658B OS=Homo sapiens GN=ZNF658B PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.187e-26 Identity = 77/222 (34.68%), Postives = 105/222 (47.30%), Query Frame = -1
Query: 57 KPFQCAFCGKKFQFPNNLIAHSRFHTNGESTKANS---TKMAPNNLIAHSRFH--------NNGESTKAKSAKFDNNENQPTSDETCQPRMINKEREKVSG--SALSYSSGAKSQQ-----KSITARSKRSTSQNTLKYVKEIQCNVCGNIFTRPDSLRRHRFIHSGDKSFSCKYCLKRFYRKDLLKDHIIVHTGEKPYECNVCGQVYAHRKTLGRHRRIHT 668
KP++C CGK F + LI H R HT + + N T +L AH R H N T A ++ + T ++ + K K S + L SG K + K+ + +S S Q K +CNVCG F +LR H+ IH+G+KS+ C C K F +K L H +HTGEKPYECN CG+ +A TL H+RIHT
Sbjct: 556 KPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHT 777 HSP 2 Score: 93.5893 bits (231), Expect = 4.030e-21 Identity = 64/209 (30.62%), Postives = 92/209 (44.02%), Query Frame = -1
Query: 57 KPFQCAFCGKKFQFPNNLIAHSRFHTNGESTKANSTKMA---PNNLIAHSRFHNNGESTKAKSAKFDNNENQPTSDETCQPRMINKEREKVSGSALSYSSGAKSQQ--KSITARSKRSTSQNTLKYVKEIQCNVCGNIFTRPDSLRRHRFIHSGDKSFSCKYCLKRFYRKDLLKDHIIVHTGEKPYECNVCGQVYAHRKTLGRHRRIHT 668
KP++C CG+ F + L AH R HT + + N + + L AH R H +P C+ + K+ + K + K+ S QN K +C+ CG F + L HR IH+G+K + C C K F +K L H +HTGEKPYECNVCG+ + ++ L H+RIHT
Sbjct: 388 KPYECNECGRSFAHISVLKAHQRIHTREKPYECNECGRSFTYNSALRAHQRIHTG---------------RKPYECSDCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGEKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHT 581 HSP 3 Score: 93.2041 bits (230), Expect = 4.619e-21 Identity = 71/225 (31.56%), Postives = 102/225 (45.33%), Query Frame = -1
Query: 57 AIKPFQCAFCGKKFQFPNNLIAHSRFHTNGESTKANST-KMAPNNLIAHSRFHNNGESTKAKSAKFDNNENQPTSDETCQPRMINKER--EKVS-GSALSYSSGAKSQQ---------------KSITARSKRSTSQNTLKYVKEIQCNVCGNIFTRPDSLRRHRFIHSGDKSFSCKYCLKRFYRKDLLKDHIIVHTGEKPYECNVCGQVYAHRKTLGRHRRIHT 674
K ++C CGK F +NL H R HT + N + + LI H + T A+ +E TS R++ E+ E + G S +S ++ Q K+ + ++ S Q K +CN CG FT +LR H+ IH+G+K + C C K F L+ H +HTGEKPYECN CG+ +AH L H+RIHT
Sbjct: 196 GFKLYECNECGKAFCQNSNLSKHLRIHTKEKPCDNNGCGRSYKSPLIGHQK-------TDAEMELCGGSEYGKTSHLKGHQRILMGEKPYECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTFSHKTHLSVHQRVHTGEKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHRIHTGEKPYECNECGRSFAHISVLKAHQRIHT 413 HSP 4 Score: 92.0485 bits (227), Expect = 1.277e-20 Identity = 70/225 (31.11%), Postives = 101/225 (44.89%), Query Frame = -1
Query: 57 KPFQCAFCGKKFQFPNNLIAHSRFHTN---GESTKANSTKMAPNNLIAHSRFH--------NNGESTKAKSAKFDNNENQPTSDET-----CQPRMINKEREKVSGSALSYSSGAKSQQ-----KSITARSKRSTSQNTLKYVKEIQCNVCGNIFTRPDSLRRHRFIHSGDKSFSCKYCLKRFYRKDLLKDHIIVHTGEKPYECNVCGQVYAHRKTLGRHRRIHT 668
KP++C CG+ F + + L AH R HT E + T + L H R H N E T A ++ ++N T ++ C K R + +G K + K+ + +S S + K +CNVCG F +L H+ IH+G+K + C C K F ++ L H +HTGEKPYECN CG+ +A L H RIHT
Sbjct: 416 KPYECNECGRSFTYNSALRAHQRIHTGRKPYECSDCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGEKLYECSECGKTFFQKTR---LSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHT 637 HSP 5 Score: 85.8853 bits (211), Expect = 1.330e-18 Identity = 62/207 (29.95%), Postives = 88/207 (42.51%), Query Frame = -1
Query: 57 KPFQCAFCGKKFQFPNNLIAHSRFHTNG---ESTKANSTKMAPNNLIAHSRFHNNGESTKAKSAKFDNNENQPTSDETCQPRMINKEREKVSGSALSYSSGAKSQQKSITARSKRSTSQNTLKYVKEIQCNVCGNIFTRPDSLRRHRFIHSGDKSFSCKYCLKRFYRKDLLKDHIIVHTGEKPYECNVCGQVYAHRKTLGRHRRIHT 668
KP++C CGK F ++L AH R HT E + T +L H R H GE +P N G + +Y+S ++ Q+ T K +C+ C F +LR H IH+G+K + C C + F +LK H +HT EKPYECN CG+ + + L H+RIHT
Sbjct: 276 KPYECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTFSHKTHLSVHQRVHT-GE----------------------KPYECND-----CGKSFTYNSALRAHQRIHTGE-------------KPYECSDCEKTFAHNSALRAHHRIHTGEKPYECNECGRSFAHISVLKAHQRIHTREKPYECNECGRSFTYNSALRAHQRIHT 441 The following BLAST results are available for this feature:
BLAST of TCONS_00022015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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