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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022004 ID=TCONS_00022004|Name=TCONS_00022004|organism=Clytia hemisphaerica|type=transcript|length=1558bp
actcgtgcaaattactattttctcctttgttactcgtgattaatcgttaa
ttgcactccaaaccatacgattactagtactaatacaCAAatggggaaga
aattttgtaaaaaacgtgTCTTCTAAAGATCCGAAAATTGTAGAGCCATT
CCATATTTTCTTAACCGGTGGCAGAGGCGTGGGAAAAAGCCATTTACTTA
CAACAATTTATCACTCATTGTCTAAACTTTAAATGTACAGAGGAGGAGAA
CCTACTAAACAAAGGATTCTTGTGCTTGCCCCAACAGGTGTAGCAGCGAT
AAATGTCAATGGAACCACAATTCACACTGGTTTGATTATTCCTACAAAAA
AGCTATTTCCCTTGAATGCTatgtcaaaacaaaatttgcaaaaaaaactt
gCTTGCGTTGAGATTATAATGATAGATGAAATTTCCATGGTACCTAGTCG
CTTATTTCGAAATATTGATTCAAGGTTACGTGATAAACCTTTTGGTGGAA
AATCAGTCTAATATTGTGGTGATTTGTATCAACTCCCACCAATTTACAAA
GCTGATTGTTCATCTATGCAAAGTGTTGTCGGATTTTAATAATGGAGAAG
TTTCCAAATGGCAGAATTGACAGAGGTCATGAGACAGAGAGATGATATAG
ATTTTCTAGATCTATTAAATCAAGTACGTTTAGGTGAActtgatgaagaa
aaagaagaactttttcTTACTAGATTCATTACAAAGGACAGTCCAGACTA
CCCTGCTAATATAACTCATATTTATGCAGAAAATAAGCCAGTAGATTTTG
TAATAGACGGGTGTTCACCAATTTAGGCAAGCTCTTTGTAATCTTTCAAA
GAATGATTCAAaactaaaatagaaatacaaaagaaaaataagaataaaga
aataagataaaaacattttaaccaGATCAAAACATAAtatatgaaatttt
gcatttcatGAGTTTCTTTAGTTTACAGATTTATACAATTTGcaaatgct
tgaaaaattacCTACTGAAAAGCATCTAATTACTGCGAGGTACCAAAAAA
TCTGACAAGAagtgatttgaattttattgaaaatgctAAAGCAAGAGATA
CAGGTGGTCTAGCTCGTATTATTGAAATGAAAGTAGGTGCTCGtgttttg
atatcaaaaaatattgacattgCTGATAGATTAGTCAATGGACAAGTTGG
AACAGTAATGAGATTCAAATTTCATTGCAATAATAAAATATCTGGTTTCT
ATGTAAAGCTTGATGATGTCACTGCAGGTAAAAAAGGATCCAATTTTGAT
AGTGTATGTAGAGAAAACAATTGGACTTTGATCGAAAGAGCAGAATCTAC
CTTTGCGACTAGAAAAAATAAGCAAAAGTCAACTATGGTTAGAAGAACTC
AATTTCCACTGATACTATCGTATGCATGTACTAGGTCACAAAGTCCAAGG
GCTAACACTTCAATCAGCAGTCGTTACCGTTCCACCTTTAACGTCCCACC
TGATTGTCCCACCTTAACATCCTAATAGCGTCTCACCTGATCGTCCCACC
TTAATGTC Run BLAST on NCBI protein sequence of TCONS_00022004-protein >TCONS_00022004-protein ID=TCONS_00022004-protein|Name=TCONS_00022004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MKVGARVLISKNIDIADRLVNGQVGTVMRFKFHCNNKISGFYVKLDDVTA
GKKGSNFDSVCRENNWTLIERAESTFATRKNKQKSTMVRRTQFPLILSYA
CTRSQSPRANTSISSRYRSTFNVPPDCPTLTS Run BLAST on NCBI transcript from alignment at sc0000401:17622..19179 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022004 ID=TCONS_00022004|Name=TCONS_00022004|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at sc0000401:17622..19179 (Clytia hemisphaerica)
GACATTAAGGTGGGACGATCAGGTGAGACGCTATTAGGATGTTAAGGTGG
GACAATCAGGTGGGACGTTAAAGGTGGAACGGTAACGACTGCTGATTGAA
GTGTTAGCCCTTGGACTTTGTGACCTAGTACATGCATACGATAGTATCAG
TGGAAATTGAGTTCTTCTAACCATAGTTGACTTTTGCTTATTTTTTCTAG
TCGCAAAGGTAGATTCTGCTCTTTCGATCAAAGTCCAATTGTTTTCTCTA
CATACACTATCAAAATTGGATCCTTTTTTACCTGCAGTGACATCATCAAG
CTTTACATAGAAACCAGATATTTTATTATTGCAATGAAATTTGAATCTCA
TTACTGTTCCAACTTGTCCATTGACTAATCTATCAGcaatgtcaatattt
tttgatatcaaaacaCGAGCACCTACTTTCATTTCAATAATACGAGCTAG
ACCACCTGTATCTCTTGCTTTagcattttcaataaaattcaaatcactTC
TTGTCAGATTTTTTGGTACCTCGCAGTAATTAGATGCTTTTCAGTAGgta
atttttcaagcatttgCAAATTGTATAAATCTGTAAACTAAAGAAACTCa
tgaaatgcaaaatttcatataTTATGTTTTGATCtggttaaaatgttttt
atcttatttctttattcttatttttcttttgtatttctattttagttTTG
AATCATTCTTTGAAAGATTACAAAGAGCTTGCCTAAATTGGTGAACACCC
GTCTATTACAAAATCTACTGGCTTATTTTCTGCATAAATATGAGTTATAT
TAGCAGGGTAGTCTGGACTGTCCTTTGTAATGAATCTAGTAAgaaaaagt
tcttctttttcttcatcaagTTCACCTAAACGTACTTGATTTAATAGATC
TAGAAAATCTATATCATCTCTCTGTCTCATGACCTCTGTCAATTCTGCCA
TTTGGAAACTTCTCCATTATTAAAATCCGACAACACTTTGCATAGATGAA
CAATCAGCTTTGTAAATTGGTGGGAGTTGATACAAATCACCACAATATTA
GACTGATTTTCCACCAAAAGGTTTATCACGTAACCTTGAATCAATATTTC
GAAATAAGCGACTAGGTACCATGGAAATTTCATCTATCATTATAATCTCA
ACGCAAGcaagttttttttgcaaattttgttttgacatAGCATTCAAGGG
AAATAGCTTTTTTGTAGGAATAATCAAACCAGTGTGAATTGTGGTTCCAT
TGACATTTATCGCTGCTACACCTGTTGGGGCAAGCACAAGAATCCTTTGT
TTAGTAGGTTCTCCTCCTCTGTACATTTAAAGTTTAGACAATGAGTGATA
AATTGTTGTAAGTAAATGGCTTTTTCCCACGCCTCTGCCACCGGTTAAGA
AAATATGGAATGGCTCTACAATTTTCGGATCTTTAGAAGAcacgtttttt
acaaaatttcttccccatTTGtgtattagtactagtaatcgtatggtttg
gagtgcaattaacgattaatcacgagtaacaaaggagaaaatagtaattt
gcacgagt Coding sequence (CDS) from alignment at sc0000401:17622..19179 >TCONS_00022004 ID=TCONS_00022004|Name=TCONS_00022004|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000401:17622..19179 (Clytia hemisphaerica)
TTAGGATGTTAAGGTGGGACAATCAGGTGGGACGTTAAAGGTGGAACGGT
AACGACTGCTGATTGAAGTGTTAGCCCTTGGACTTTGTGACCTAGTACAT
GCATACGATAGTATCAGTGGAAATTGAGTTCTTCTAACCATAGTTGACTT
TTGCTTATTTTTTCTAGTCGCAAAGGTAGATTCTGCTCTTTCGATCAAAG
TCCAATTGTTTTCTCTACATACACTATCAAAATTGGATCCTTTTTTACCT
GCAGTGACATCATCAAGCTTTACATAGAAACCAGATATTTTATTATTGCA
ATGAAATTTGAATCTCATTACTGTTCCAACTTGTCCATTGACTAATCTAT
CAGcaatgtcaatattttttgatatcaaaacaCGAGCACCTACTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022004-exon-sc0000401-1491911889:17622..19179 | TCONS_00022004-exon-sc0000401-1491911889:17622..19179 | Clytia hemisphaerica | exon |
| TCONS_00022004-exon-sc0000401-1510915933:17622..19179 | TCONS_00022004-exon-sc0000401-1510915933:17622..19179 | Clytia hemisphaerica | exon |
| TCONS_00022004-exon-sc0000401-1575043694:17622..19179 | TCONS_00022004-exon-sc0000401-1575043694:17622..19179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:17622..19179 . |
Blast
BLAST of TCONS_00022004 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 8.101e-18 Identity = 72/198 (36.36%), Postives = 97/198 (48.99%), Query Frame = 2
Query: 155 IFLTGGRGVGKSHLLTTIYHSLSKL*MYRGGEPTKQRILVLAPTGVAAINVNGTTIHT--GLIIPTKKLFPLNAMSKQN--LQKKLACVEIIMIDEISMVPSRLFRNIDS-----RLRDKPFGGKSV*YCGDLYQLPPIYKAD-----CSSMQSVVGF**WRSF--QMAELTEVMRQRDDIDFLDLLNQVRLGELDEE 700
IF TG G GKS+LL I SL PT + A TGVAA ++ GTT+H G+ L A++++ Q L C ++ IDEISMV + LF +++ R ++KPFGG + CGD QLPP+ K C +S W+ ELT+V RQ D F+ LL VRLG +E
Sbjct: 224 IFFTGSAGTGKSYLLKRILGSLP---------PTG--TVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWLNCQRLV-IDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSKS------WKRCVPVTLELTKVWRQADQT-FISLLQAVRLGRCSDE 402
The following BLAST results are available for this feature:
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