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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021990 ID=TCONS_00021990|Name=TCONS_00021990|organism=Clytia hemisphaerica|type=transcript|length=1702bp
GCCAAACATGGCTATACATCTCGATAATCAAACAGATTGCCGAACTTAAC
AAACACAGTAAAAATGCGTTTATAGTGGAAAAAATTTACAACTGTTTTAC
GAGCTTTTAATCTTTAAAATCAAACCAGACATTTTGCCAAGAAAAGTGGA
TTAATTGATGTGGTTCTATAATACAGGTAAGCTTCACCAGCAACAGCTAT
GAACTCATCAGCTATCGGACTTCTCATCATCGTCATTGCATCCGATCAAT
TATCTGTAATCCAAGGTTTCATATCAACCAATTTCGATCAATGCCGTCAA
GATTACTTTTACAATGGAAGACCTCCTAGAagcattaaaaaaattaataa
tgtTGATAATCTTGGAAATGATGCAGATACAGAAGAAATTTGTCAATCAT
ATGAAggaattaaatattttgcaacACTTTATGATAAGAAGTACAAGATA
CCAAGATACTCCGCTTACCTCCTTGACCCGAATTCCAATAATGGTGGACA
ACCAAGTAGACGGAGCACTTGGTTTATTGAACCAGATTTAGTTGAAAAAG
ATAAATTCAAAGATATGAGCACTTTAAGTGTATTTGGAAAAGCCAAAGAG
AAGATGGAATTCGTTGCAAATTCTCAAGCAACGNAGTGTATTTGGAAAAG
CCAAAGAGAAGATGGAATTTGTTGCAAATTCTCAAGCAACGGACGATGAT
TATGAAGGATCTCTTTGGGACAAAGGCCACTTGAATCCAAACAATTTCCA
GAATGGTGCAGGCAGAACGGCAACATTTACATTAACGAATGCGGTTCCTC
AAGATTCTTGTTTGAATCGAAACTATTGGAAAGAAGCTGAAGACGAGGCC
AAAAAATTATTGTTCCAACATTGCACTGATGGCAAAGCTTATTTTATTAC
TGGTGCTGTCCCAGATGATGACAAAGCTATCTATGTTGATAATAAGCCAA
AAATATCAATTCCTAAGTATATGTATTCTGCTGCTTGTTGTGATCACAAC
ACAGAGAAATGGAATAGTTTCTCATTTGCATTTGCTGCAGAAAATAAAGC
TGGCGTGGCAGGAGTAGCAGTATTAAAGGTTTCGAGATTGTCAGAGATGA
CCGGTATTGACTTTTTTGATAATGGGCAGTGCTATTCTCATTCGATTCCT
ACTATGTTGCATGTAGGTAAATTCAGCGAATGGAATAAAGTCAGTTTAAA
GAAGCGAAAAGAAGAAGACACGAAATTGGAAGAACTTCAAAAGAAGTTTG
AGGAGGACATTAACAAGGGCCATAACAATTGAAACAAAACAATGCTGACA
TTACTAAAAATACACATTGTCGTAAATTATGTGAATAATAAACAAACAGA
ATAAACAGAATAACTTATTATATCTTTATATAATAAATGTCAAGAAGTTC
TGCACATGTTTTTATTAGGAGTACCTTATCGGCAAAAACTTAGTCGACCT
tgagtgactaaattttggcttagtgactaaaattagggccgactaaaact
ttgggccgactaaaattaaggccgactaaaagtttgggccaaattaaaag
tttataattaagctttccttattttccagtattttaagctttctcctatt
ttccatctgcttgtaaatttagaaatggcccaaattttcagtcggtctta
attattagtcggcctatagtgactaaattttgacgaggtgactaaaatta
gg Run BLAST on NCBI transcript from alignment at sc0000401:191869..199428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021990 ID=TCONS_00021990|Name=TCONS_00021990|organism=Clytia hemisphaerica|type=transcript|length=7560bp|location=Sequence derived from alignment at sc0000401:191869..199428- (Clytia hemisphaerica)
GCCAAACATGGCTATACATCTCGATAATCAAACAGATTGCCGAACTTAAC
AAACACAGTAAAAATGCGTTTATAGTGGAAAAAATTTACAACTGTTTTAC
GAGCTTTTAATCTTTAAAATCAAACCAGACATTTTGCCAAGAAAAGTGGA
TTAATTGATGTGGTTCTATAATACAGGTAGGTTTTGTAGTATTATTTTAA
ACTTACACGTTTTTTTCTTTATAAGAACAAACTATATAGAACATAAGGCT
TCGATTGCCAAAGAATTAAGAACATATTAAGAGCAATCTGAAGCTTGGCG
GACTCGAAAACGTGCTGTTTCTTAGGAATTTGCACAGAATTTGCTCAGAA
GATGTTGAGAATAAGAACATTTTTAGAACATTTTTAGGCGTAAACTCGAA
AAAGTCAATAACATTTGAAGGCTTCAATATAGTTTTTAACGTTTTCATAA
AGGCGACAAAAACGACCAAAATTAGTCCAAAACATAAGCAGGTTGTTTTT
GGTCATAAATTAAGTACGGGATATATTGACACGACCAATAGATATTTACT
TTATCTCACTTTCAATAAATGGAATCCATATACAATTCAATAAGATTTTC
ATGAATGTGACTCGAGTCAGGGACTCATTTACCAAGTTTCTGTAGATCTT
TTTTTTCTCGTAAGGCTGCATCAATAAGGAAAAAAAATATCCAACACTCG
TGTTTACTTTGCTTTATCTGTTAAGAGTAATTTATTCAGGATAAACTCCC
GAACGGGAAAATCTTCCCGATGAGGTTTCGAAAATATCTCGGCTAAAATC
CAGAAAATCGTCCTCTCAACATGAAGCTTTTCATTTTTGGTTTTTAATCA
AGCTGTTAACATGACAAATTTCAGATGAAAATATGTTTTAGGTATTTGTT
AACAAGGCTTTTGTTATCTTTCGTCAAATTTTTTCCTCTGATTTTTGTTT
TTTTCCACTTACTACCAACTAGAAGAACCATCATTTTTTCAACAGAAACA
GAAACGTTTTTATAAATGTTCTGCAACTCTCTCGAAGGCAGATCTCTTAT
CTAACCCTATTCAACCTAGGCTTTTAGGGGCGTTTCATCAGAACTGGGGG
GGGGGGGGCTTTTCTGTACCACCCCTTAACTTTTGATCTATTTGGTCTTT
TTGGATGAAATTTGGCACACACGATCCTTGTCACATAGGGTAACTTTTGC
CAAAAATTTTTTTGCGCAAAGTGATATAAATAGCTATTATATTCTAAAAA
AGGCTTGAGAAAAAAGTTGCCTGGGTTTAAATTGGTTAATTTATCCTAAA
TATTCAATAAATTACGGTTTAAACGATATATTTGACATAAAAAATACATT
TGTATTGGAAAAGTGTCAATTTTTGTGACACCTTACTATACTGTCAGAAT
TGTCATCATGTGCAAGGTATGAAAATTTTTATTTATTTTGAAGCTAAGTA
AAAGTTAGAAATTTACAGAAAATTTCATGACAAAAGCTCTATTATTTCAG
GAGCTAATACCAATAATTTGATCTCCGAACAGAAACAGCCCCCCCCTAGG
CCGAATAGGGTTAAATACATTATCCATTTTAGAAGTGTAAATTATTATGA
CTCAAACTTGCTTGAATCCGATTTTTTTTAAATCAAATACTTTTTAATTT
TTCAATGTAACTTGATAGGAGTTGACTTCTGTAAATGCCGGAAGAAAATA
TAATTAAAAAACAGTTTTGGGAATCTTCATATCTCGAATTTTCTCTGAAT
GTCACATAAGTAACCAAGGAATGCTCCAATTGTGTAATTTTTATATGTCT
TTGAACAAAACTAATCAATCCAGAAGTTTTTATTGCTTTTTGTGTAAAAT
GCCCCCACCAGCGGTTTGCGTGAATGCTTGAATGGGCTTTTTCAATTGCG
TGAATGCGTGAGGCCTCGGGGAGGCCTCGTAAACCAACACACATATTTTG
CTTTGAGAAGTTCATCTTGAGTGGATTAAATGTTCGATTAAAGACGATAC
AGTGTGTGGCCCCTAAAATGTAACCTGATAACAAGTGTTCATAATTTTCG
TACACGCACAGTAAACCTCTGAAGGTGCTTGAAAATTAAACATCTGAGGA
AAATAGTCCTACCGCATGAAATTCTACAACAAGAATCTTGTTGTGCGCTG
GAAAGTCAAAAACTAAACTTTCCTAAAAGGAATGGCAATGTCAACAAAGT
TGCATGATTGTTTGAAAATAGGGCACCATTAATTTCAAACACAATTACGC
AACTTTTTTGACATTGCCAGTCCTTTTAGGCGAGCGCGGTCCTTACGATT
TTGAGATAGTATATTTGTCAGATTGTTATGCTTTCGTCCATCCCTTTAGA
ACTTCAGTGTGGTGGGCAGAAAACAATCACAATCTGATCTCAGGTTACTT
AAATGCTGGTGGCCCCTAAAATGTAGGTTTTGCTTTGATTGACCACAGTG
GTTGCAAAACTGGCTCGATTATACTGAACTTTCGCCCAGTCCTTCCTGGT
GTAAATCTCTTGGTGCGAGAAACGAAAATTTACTAGTATCATATAATTAT
TTTTAAGTATCAGCTACACTTCTTTGAAAGAAGATCGCTGAAAATATTGA
TATTTATACATTTAACATGGAAAATGACAATACCATTTGAGATTAACATT
TTATAAGTGCCTACATTTAAGAACATCAAACATAGAACGACTTAGAAACT
CGAAAATTTATTGGTAATTAGTAAAATAATTCGAGAAAATCATTATGATA
GCAAACCATCATTTCAGTACCCTGAGTATCAGAGGTTAAGGTTTCAAAGA
ATATATTAGCCTCTGAAGACTAATAATATCAATTTTATCGCGCATGTGTC
AATCTTATCACTGTAGAAAGAATCAAAGATGAAGAGCAAATATTACTTTA
TTAATGTCTAGCAGACTGTATCAGTATGCAGTTTACTGTTTACGAATCCC
CCAGAAACCTCCAAGTGTAATTGAAGTGAGTTTCTTTCGAAAGAAATCTA
ATGTATAACAGTAATTACTAAACTATTAATTATGGGAAATGTCACTTTAA
TTTAATCGAAATAATAGACAAACTTAATGTTATGATTCTCTATCACTGAC
TCTTTTTAAAAAGCATTGATGATATTTTTTAGTCCCGTTTTTCAACGACG
GGAATAAAAATATCAACTTTGAACTTCATCCAAGATCTTGGATGGTCGTC
ATGGTTACTTTGGTCTTCGCTGATTGCGCGCTGAATAGAATCTCGATTCG
TCGGCACATCATCGATATATGATTTCGACCTGTGCTTTTCACGGTATCAT
TTCAGGGGAACTCTGAGCTGTGATCAAACACGGAAATATTACTGTTCTTT
TGAATTTTACTTTCAACTATTCTTGTCATCAAAGGTTTTGAACCATCTGC
AGAGTGGCAAGCTATACAAATTATACTTTGTTTCAAACTGATTGTTTCAC
ATTTTACGCTTGGTCTACAGTATCACATTTACATTTTCCTTTGTAAAGAA
GGAATATTTCATTTTCCTTCCGCTTTCGTTAATTGTTTTCCATTTTTTTT
CCGCTCTTTCTCTTTATTAATCTTGGAATTGCTTTCCTTTACTCGCTGTA
GAATGTTTTTTCGGTCATTGACCCATGGACGGAGATTATCCTTTGGTTCT
TTGACTTTTAGGTTTTTTCTATACTAAAGCACGTATCCGGAGCTTCATGG
AATCAATTGACGCGCTTTCCAGTTGTTTTAATCTCTTCATCTTGCTCAAA
TTTGTATTATCCTCACTAAAGTCTGTCTCAATATAATTTGCAGCGGAGAC
AAAAAAGTTGTCACTTTTGAATGTTATCAAAAATTACACTAGCTAAAAGA
ATCCTACCGGGTCTGTGAGAAGGGGGCGCTATCATAACAGATTGCCTCCA
TAAGAATTGTTAACAATTTCATGTTTGCAATTGTGATTCTTTGTTAAAAT
ATGGCAGTAAAACGAAACCTACAATATAGGGGCCAATGAAAAAAGCGACA
TCACTATGAGCGATTAAAAGATATTGTCAACATCAAAGCTTTAGTAGAAT
AACTTTTGGGAAAGAAAATTGACATACGAAAGTTTCCAACACTGCAAAAA
GTTCGGTAAAATATCTTTAACTAGGGTCTCTAGAAAGATTTTAAATTCAA
CCTACATTTCAAGGGCCATACACTGTATACAGCGTGTCCGAAATACAAAA
TAGGGTTTTTTTATAAAATCAATTTACTTTACGCGAAAAAATCTAAGCCT
GCTGCGCAAAAATAAGTGCTAGTAAGGCACATATTGTGACTGTCTTTATC
ATTGGCGTGGTGGGTGATGGCAGTTTATTAATTCTACCTAATTCTATAGT
GAATTTTTAGTATTTGCCACTTACAAAATATGAAATTCTGCCTGATGTAG
CGGACAAAACTTTGACATTTTATACATTTTCTGTTAGGCCAACCATCTGT
GAGTCTGAAAATTTTAGAATCGCAATGAAAAGAATTGATAAAGAAAAAAA
TGAAGACTTTTGCGGTATATGGTGTATCTTTTATCAACCTAAAATTATTT
TTTCGGAAAATCTTTCTAAAAGCTTATTTGCTTCAAAATTATGAAAATAG
TGCTTTTTGACCAACTTTCCATCCCAATTTTTCATAGAAAAACAACCATA
ACTTTTGATGCATTAATTTAGAAAAATTTTCCGAAAAATTTAAAACAGCT
CAATTCTTTGCGGACAGTTTGAAAAAACTTCGAAACAACCATTAAAACTT
AGCACTTTTTAGAAAAGAAGGGGCGCGTTCACACTGGAAAGTTTACTTAA
TTAAATCTATCAAAGTTAAACAAAGAGATTTATGATGGATGAATACACTG
GTTTATTACAGTTTTTTGTAGGTTCACGAGATCTATTATAACACGGTAAT
TGATTTTGCTTAAGGCTTCTCATTGGTTGATTTTTTATTGAGAGTTTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCGTTTGCACTATTTCTAATTTTTTCCTCAGTTCAT
TCGTTTTTGAAATCGTAAAACTTTTTGTTCACTGCACGCATTCTTTGTTT
ATGCTTCCTTAATAAAATATTTTGTTTTAAGGGAAGCCTCTACCCTACCC
TTAAAACAATAGAGCTTACGACTCTTAATTAAGGAAGATCGATTAAAAAT
TACAATACTACGCGTTCGACTCTTTGTTAAATGCACGTTCTGTATTGTAG
TCAACAAAAGATTCTCCTAACTACATTTTTATTAAGGAAGGTCTGTAGTG
TGAACACGACCAAGGTGATGCAACATATTATTAACAACTTTTTAAAGTTC
ATAACGTCATTTTTGCAATTAAATCTTTAATTACACTTAAGGCATTTGAT
TAAAAAGCAATTTATAAAGGCAATTCTTTATTAAAAGTGTTAAAGAATCT
AAAACATAACTTTTATGTTCAAATACTAAAATCAATTTTCCAACAATGGT
CAGAGCCCTTAATTCTACTTTATCATTCCAACAGGTAAGCTTCACCAGCA
ACAGCTATGAACTCATCAGCTATCGGACTTCTCATCATCGTCATTGCATC
CGATCAATTATCTGTAATCCAAGGTTTCATATCAACCAATTTCGATCAAT
GCCGTCAAGATTACTTTTACAATGGAAGACCTCCTAGAAGCATTAAAAAA
ATTAATAATGTTGATAATCTTGGAAATGATGCAGATACAGAAGAAATTTG
TCAATCATATGAAGGAATTAAATATTTTGCAACACTTTATGATAAGAAGT
ACAAGATACCAAGATACTCCGCTTACCTCCTTGACCCGAATTCCAATAAT
GGTGGACAACCAAGTAGACGGAGCACTTGGTTTATTGAACCAGATTTAGT
TGAAAAAGATAAATTCAAAGATATGAGCACTTTAAGTGTATTTGGAAAAG
CCAAAGAGAAGATGGAATTCGTTGCAAATTCTCAAGCAACGNAGTGTATT
TGGAAAAGCCAAAGAGAAGATGGAATTTGTTGCAAATTCTCAAGCAACGG
ACGATGATTATGAAGGATCTCTTTGGGACAAAGGCCACTTGAATCCAAAC
AATTTCCAGAATGGTGCAGGCAGAACGGCAACATTTACATTAACGAATGC
GGTTCCTCAAGATTCTTGTTTGAATCGAAACTATTGGAAAGAAGCTGAAG
ACGAGGCCAAAAAATTATTGTTCCAACATTGCACTGATGGCAAAGCTTAT
TTTATTACTGGTGCTGTCCCAGATGATGACAAAGCTATCTATGTTGATAA
TAAGCCAAAAATATCAATTCCTAAGTATATGTATTCTGCTGCTTGTTGTG
ATCACAACACAGAGAAATGGAATAGTTTCTCATTTGCATTTGCTGCAGAA
AATAAAGCTGGCGTGGCAGGAGTAGCAGTATTAAAGGTTTCGAGATTGTC
AGAGATGACCGGTATTGACTTTTTTGATAATGGGCAGTGCTATTCTCATT
CGATTCCTACTATGTTGCATGTAGGTAAATTCAGCGAATGGAATAAAGTC
AGTTTAAAGAAGCGAAAAGAAGAAGACACGAAATTGGAAGAACTTCAAAA
GAAGTTTGAGGAGGACATTAACAAGGGCCATAACAATTGAAACAAAACAA
TGCTGACATTACTAAAAATACACATTGTCGTAAATTATGTGAATAATAAA
CAAACAGAATAAACAGAATAACTTATTATATCTTTATATAATAAATGTCA
AGAAGTTCTGCACATGTTTTTATTAGGAGTACCTTATCGGCAAAAACTTA
GTCGACCTTGAGTGACTAAATTTTGGCTTAGTGACTAAAATTAGGGCCGA
CTAAAACTTTGGGCCGACTAAAATTAAGGCCGACTAAAAGTTTGGGCCAA
ATTAAAAGTTTATAATTAAGCTTTCCTTATTTTCCAGTATTTTAAGCTTT
CTCCTATTTTCCATCTGCTTGTAAATTTAGAAATGGCCCAAATTTTCAGT
CGGTCTTAATTATTAGTCGGCCTATAGTGACTAAATTTTGACGAGGTGAC
TAAAATTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021990-exon-sc0000401-1575043694:199253..199428 | TCONS_00021990-exon-sc0000401-1575043694:199253..199428 | Clytia hemisphaerica | exon |
| TCONS_00021990-exon-sc0000401-1575043694:191869..193394 | TCONS_00021990-exon-sc0000401-1575043694:191869..193394 | Clytia hemisphaerica | exon |
| TCONS_00021990-exon-sc0000401-1510915933:199253..199428 | TCONS_00021990-exon-sc0000401-1510915933:199253..199428 | Clytia hemisphaerica | exon |
| TCONS_00021990-exon-sc0000401-1510915933:191869..193394 | TCONS_00021990-exon-sc0000401-1510915933:191869..193394 | Clytia hemisphaerica | exon |
| TCONS_00021990-exon-sc0000401-1491911889:199253..199428 | TCONS_00021990-exon-sc0000401-1491911889:199253..199428 | Clytia hemisphaerica | exon |
| TCONS_00021990-exon-sc0000401-1491911889:191869..193394 | TCONS_00021990-exon-sc0000401-1491911889:191869..193394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:191869..199428 - |
Blast
The following BLAST results are available for this feature:
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