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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021988 ID=TCONS_00021988|Name=TCONS_00021988|organism=Clytia hemisphaerica|type=transcript|length=452bp
AAAAGAAAAGATCTATGGAATAAATATGTCTGATAATAATTCAGCATGGG
AAGAAGGTCATCGTCGTGAAACTCGAAAAAGTTATCAAGCTTATATTGAA
GAAATCACTGGTGTGGGTGATACAAATCCAGAAACATCAGGGGCCACAGA
AGAAGATGATGCAAGTAATAAAAGACGTTCAAAAAGAACACCTATACCCA
AACGAAATTTCAAACTGATTGATAATTATCAAGATTCATCTTCTAAGGaa
ccttcaaaaaagaaagacCGAAAATCTAAAGGAAGGAAATCAGTAGATGC
TGCAGACAATATAAAGACAGAACCAGTTAACGACGATCAACCAGCACTAC
CGCCTTCTGAAGAAGCTCCAGAACCTCAACAAAGCGAGAGGAAATCTTCA
AAGAAATCTGTCTCGTGGAGTGTCAAAGAAGAGCAAGTAGAGCAAGAGCT
AG Run BLAST on NCBI transcript from alignment at sc0000401:138937..141409- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021988 ID=TCONS_00021988|Name=TCONS_00021988|organism=Clytia hemisphaerica|type=transcript|length=2473bp|location=Sequence derived from alignment at sc0000401:138937..141409- (Clytia hemisphaerica)
AAAAGAAAAGATCTATGGAATAAATATGTCTGATAATAATTCAGCATGGG
AAGAAGGTCATCGTCGTGAAACTCGAAAAAGTTATCAAGCTTATATTGAA
GAAATCACTGGTGTGGGTGATACAAATCCAGAAACATCAGGTGAGAGTTC
CAGATACATTTAGCTAATTTCCACTCTCATGGAGGGTATAGCTAGCTGTA
TGTGTTTTCATTCTTAAAGCATTTCCAGATATCATTTATGACCAGTGCTC
TTCGTTCTCAACAAAGTTTAAAACAAAGTTTTTCAATCTTCAGCTAAATT
CAAGTTTGTTATATGTAAAACCTATTGTCCTGCAGACTAAGAACCTTTGT
TTTTGTCACTATCTAGAGATTTTTCATGTTTTGTTAAGTTATGTAACTGC
TGCTATTAGGGCCAATTGGAGAAATTGTTAACCACGATTGGAGCCTTTGC
CTGATTGAACAGCCTCTATGGGTGCTATTAAATGCTGCATGGGTCGCTAC
GCTCCTAGATAGGTCCCTACCTGGTAGTTTCAGTCCCAAAATGAATGTGT
TGTAATTTACCCCTTCTTCAGGAATGGCCAATTATTAAAGCAAGTTTGAT
TTGCAAAAGGGGTCGCCACTACAGATTCAAACAATAGATCTTATCAGGGT
TTTTGATTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCAGGGTATT
ACAATAGAAATCTCTTAGGAATTCCTGCTATTGTAATACCCCCGAAACTA
TCCCACAATGCATCGCTGTTTCAGAAATCAAAAACTTTAATAAGGTCTAT
TGCTTCCATAATGGCGGAAATAACTAAACCTAGAAAAACCTCTATTAATA
TTTTTTTAAATTATTTTTCTAGCAGGGGCCACAGAAGAAGATGATGCAAG
TAATAAAAGACGTTCAAAAAGAACACCTATACCCAAACGAAATTTCAAAC
TGATTGATAATTATCAAGATTCATCTTCTAAGGAACCTTCAAAAAAGAAA
GACCGAAAATCTAAAGGTACTGTTGTTATAATTTTTGATTGTGTTTTAAC
TTGGTGGACATAATGATATGGCGGTGCTTTTGTGCTTTGATAACCATGGG
GTTAAATGTTTTTGAGCCTCGCTATGCTTTGAAACATACGTCATGAAGCT
GAAGTATGTCTACTCGATGTCTTGTACCACGCGATGAATTACACATCGTA
TCATGCTTAAAGATACACGCTTTTTTTATAAGAATATACTTTATAAGAAA
GTCCATGATGAAAATGGCCAAAAAATTAAGAATAGTGCTAAGAATCACCA
TCATGGAATTCAAGCTAAGAATGCCATTTTTAGAGCATTTTCAATTATAA
ATTGACAATTACCCCAAAGTAAGGCTCACTTCTTTCACAAAAATGACATT
TTATGCTTGAGACGTATGTACTAAATGTTAAATCTAGTGTGAATTAGGAT
CCTAACCTTAGAATGCTGTAAGACTATCCATGATGAAATGGATTTACACC
GTTCTTATAAAAAAAGCGTGTATGCTTATTTTAAGCTTTTTCAAGATTTC
TGTCGTGATACTGATGAGGCTTATGTTAAAAAAAAAAAACGTTTGGTTCA
TTAGGCCATTTCGTACTTCACAACTTATGTATTATAAGTAAAGCCTGAAT
TTAAAACGCAAAATTAAAGGTTTTGTTTTTAAATATAAGAGTGATCGTTT
GCTTACTCATCAATTTTGATTTACAAGCTTTTTGATATTGAATTGACACG
GGTGTGGAGCAAGATTGGTCAGAAAGAGGAAAAGAAAAACCTTTTTTTGC
TTATCCAGTACAATATAACAATAGGCAGACACTGTCCTGATGTAAAACAT
GTGTCTAATATGAAACAGGAACACTTATTTAAAAAGGAAACCTTTATTGT
TCGAATAAAGCTTCATTTTGTTAAAATTGCTGAAACTGTCATTACTCACA
TGAATGTGGTTCAAGTTTTAATCAAATCTGCTGTATTATTTTTAAGAAAA
TAGGCTACAGAGGGTATAATAAAAAGACTTTTTCCTTTCGTGATGATTTT
TAAAAAGTTTTGGAAGAATTCAGGATCTACAATCTCTTAATAAATATATG
GAGACTGACCACTTTCTTACTAATTCCGTCCCCTGTACCCCATTCGTAAT
GTCCTGGAGTTCCGAACATTGCCAATGGAGTGGAGGGGGCGACGTCTCAA
CTATTTATAGTAGGATTGTAGATATATGAAGATTTACCAAGAAACAGCTC
ATAAAGTGAATCCATTATCATAAAGAGTACATATTACTGTTGTTTCTCAC
AGGAAGGAAATCAGTAGATGCTGCAGACAATATAAAGACAGAACCAGTTA
ACGACGATCAACCAGCACTACCGCCTTCTGAAGAAGCTCCAGAACCTCAA
CAAAGCGAGAGGAAATCTTCAAAGAAATCTGTCTCGTGGAGTGTCAAAGA
AGAGCAAGTAGAGCAAGAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021988-exon-sc0000401-1575043694:141270..141409 | TCONS_00021988-exon-sc0000401-1575043694:141270..141409 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1575043694:140394..140534 | TCONS_00021988-exon-sc0000401-1575043694:140394..140534 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1575043694:138937..139107 | TCONS_00021988-exon-sc0000401-1575043694:138937..139107 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1510915933:141270..141409 | TCONS_00021988-exon-sc0000401-1510915933:141270..141409 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1510915933:140394..140534 | TCONS_00021988-exon-sc0000401-1510915933:140394..140534 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1510915933:138937..139107 | TCONS_00021988-exon-sc0000401-1510915933:138937..139107 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1491911889:141270..141409 | TCONS_00021988-exon-sc0000401-1491911889:141270..141409 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1491911889:140394..140534 | TCONS_00021988-exon-sc0000401-1491911889:140394..140534 | Clytia hemisphaerica | exon |
| TCONS_00021988-exon-sc0000401-1491911889:138937..139107 | TCONS_00021988-exon-sc0000401-1491911889:138937..139107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:138937..141409 - |
Blast
The following BLAST results are available for this feature:
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