TCONS_00021984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021984
Unique NameTCONS_00021984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021984 ID=TCONS_00021984|Name=TCONS_00021984|organism=Clytia hemisphaerica|type=transcript|length=522bp
AGCAGCTACGGTATCTGAACTATCATTATCACCGCAATTAAGATTGCTTT
CGTTTTCACCGATACGGCTattcatatcaaatttttcattgagATTGCCA
ATGGTTTCAGCAGTGACgttatcatttttattttttgcagcATTACTCTC
GTCTGGTTTAAAACTTTCATTGATATTAATATCATTTAGATGTTCTATGT
TCATCTCTCCTTTAATAACGCTATCCAATGTTGAACTTTCgacattttca
tgaattttttgatgttttttcagATTATGAGGTctcttgaaatttttatc
acaCACAGTACATTCATTGTTCGATGGCTGTTTGGACTCAATGACGTCAT
GCACATCTTCATGTGTTTGCAAGCTATGTAATTTCTTGAATTCCTTACCA
CATGCCTTGCACTCATAAACTTCTGACGTCTTCTTCGTTTTGGATTCGTT
AATTGAATGGTTCGTACTTCTcgttttcattttattgatttttattcTAA
TATTTATTGAACTGTTGATTCc
Run BLAST on NCBI

transcript from alignment at sc0000401:94224..94800-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021984 ID=TCONS_00021984|Name=TCONS_00021984|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at sc0000401:94224..94800- (Clytia hemisphaerica)
AGCAGCTACGGTATCTGAACTATCATTATCACCGCAATTAAGATTGCTTT
CGTTTTCACCGATACGGCTATTCATATCAAATTTTTCATTGAGATTGCCA
ATGGTTTCAGCAGTGACGTTATCATTTTTATTTTTTGCAGCATTACTCTC
GTCTGGTTTAAAACTTTCATTGATATTAATATCATTTAGATGTTCTATGT
TCATCTCTCCTTTAATAACGCTATCCAATGTTGAACTTTCGACATTTTCA
TGAATTTTTTGATGTTTTTTCAGATTATGAGGTCTCTTGAAATTTTTATC
ACACACAGTACATTTATTGTTCGTNCAGATTATGAGGTCTCTTGAAATTT
TTACCACACACAGTACATTCATTGTTCGATGGCTGTTTGGACTCAATGAC
GTCATGCACATCTTCATGTGTTTGCAAGCTATGTAATTTCTTGAATTCCT
TACCACATGCCTTGCACTCATAAACTTCTGACGTCTTCTTCGTTTTGGAT
TCGTTAATTGAATGGTTCGTACTTCTCGTTTTCATTTTATTGATTTTTAT
TCTAATATTTATTGAACTGTTGATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012338XLOC_012338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021984-exon-sc0000401-1575043694:94490..94800TCONS_00021984-exon-sc0000401-1575043694:94490..94800Clytia hemisphaericaexon
TCONS_00021984-exon-sc0000401-1575043694:94224..94434TCONS_00021984-exon-sc0000401-1575043694:94224..94434Clytia hemisphaericaexon
TCONS_00021984-exon-sc0000401-1510915933:94490..94800TCONS_00021984-exon-sc0000401-1510915933:94490..94800Clytia hemisphaericaexon
TCONS_00021984-exon-sc0000401-1510915933:94224..94434TCONS_00021984-exon-sc0000401-1510915933:94224..94434Clytia hemisphaericaexon
TCONS_00021984-exon-sc0000401-1491911889:94490..94800TCONS_00021984-exon-sc0000401-1491911889:94490..94800Clytia hemisphaericaexon
TCONS_00021984-exon-sc0000401-1491911889:94224..94434TCONS_00021984-exon-sc0000401-1491911889:94224..94434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:94224..94800 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566737	0.773721	0.385013	0.251117	0.152855	0.241577	0.582904	1.22784	0.66861	0.473246	0.344508	0.0754888	0.60307	1.40916	0.772349	1.31234	1.78688	0.784926	0.120491	0.126085	0.328772	0.481091	1.42958	1.06339	0.121696	0.543054	0	0.16587	0.37742	0.384532
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top