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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021983 ID=TCONS_00021983|Name=TCONS_00021983|organism=Clytia hemisphaerica|type=transcript|length=1415bpRun BLAST on NCBI transcript from alignment at sc0000401:79164..80578- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021983 ID=TCONS_00021983|Name=TCONS_00021983|organism=Clytia hemisphaerica|type=transcript|length=1415bp|location=Sequence derived from alignment at sc0000401:79164..80578- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021983 vs. Swiss-Prot (Human)
Match: Z658B (Zinc finger protein 658B OS=Homo sapiens GN=ZNF658B PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.868e-65 Identity = 149/435 (34.25%), Postives = 218/435 (50.11%), Query Frame = -2
Query: 2 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSIDPLSSEFNVTDRFDDSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLGNYDH-HMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKRSGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 1303
EC CGK F K ++L HQRIH + C + T + K H LS + + E+ + NS L + H E P + ++ ++ L + + G +KP++C CG+ F + AH R HT ++ + G + T SA + I G K + D ++F ++ +G+ KC+ C K++ + +L+ H H G K+++C++C K F + TH + EKPYEC+ CGK FS +S L+ H +H + ++CNVCGK F + +L H RIHTGEKP++C+ CGK F+Q T L H RIHTGE+P++C CGK F L+ HHRIHTGEKPY+CN CGK FS S+L HLR +GEK +EC+ CGK
Sbjct: 279 ECIECGKTFSKTSHLRAHQRIHTGEKPYECVEC----------------EKTFSHKTH-LSVHQRVHTGEKPYECNDCGKSFTYNSALRAHQRIHTGEKP---YECSDCEKTFAHNSALRAHHRIHTG----EKPYECNECGRSFAHISVLKAHQRIHTREKP---YECNECGRSFTYNSALRAHQRIHTGRKPYECS--------DCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGE-KLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGK 677 HSP 2 Score: 222.631 bits (566), Expect = 9.499e-64 Identity = 152/440 (34.55%), Postives = 218/440 (49.55%), Query Frame = -2
Query: 2 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSID---PLSSEFNVTDRFD--DSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLGNYDH-HMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKRSGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 1303
EC CGK F + +NL KH RIH + + + C PL + + K L + + E+ I+ S S L + H E P ++ KT+ L+ + V G +KP++C CGK F + AH R HT ++ ++ + + + A+ R I G K + N H+ V+K R+ ++ +C+ CG+S+ Y +L+ H + H G RK ++C+DC K F + H + EKPY+C C K F+ S+L H +H + ++C+ CGK F LS H RIHTGEKP++C CGK F+Q + L H RIHTGE+P++C VCGK F L H RIHTGEKPY+CN CGK FS ++L H RIHTGEK +ECN CGK
Sbjct: 201 ECNECGKAFCQNSNLSKHLRIHTKEKPCDNNGCGRSYKSPLIGHQKTDAEMELCGGSEYGKTSHLKGHQRILMGEKPYECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTFSHKTH---LSVHQRVHTG----EKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHR---IHTGEKPYEC--NECGRSFAHIS--VLKAHQRIHTREKP----YECNECGRSFTYNSALRAHQRIHTG-RKPYECSDCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGEKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGEKPYECNECGK 621 HSP 3 Score: 204.912 bits (520), Expect = 1.512e-57 Identity = 148/437 (33.87%), Postives = 217/437 (49.66%), Query Frame = -2
Query: 2 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSIDPLSSEFNVTDRFDDSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLGNYDH-HMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKR--SGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 1303
EC CG+ F + L HQRIH + + C+ S +N R + ++ H+ K + + E++ + NS L + H E P + N ++ L + + + G +K ++C CGK F + H R HT ++ + + +S ++R I G K + NV ++FV K + V +R +G+ +C+ CGK++ L H + H G K ++C +C K F R H + EKPYEC CGK FS S L H + ++C+ CGK F +S H R+HTGEKP++C+VCGK F ++TL+VH RIHTGE+ ++C CGK F Q +L H RIHTGEKPY+CN CGKAF+ S L H RIHTGEK +EC+ CGK
Sbjct: 391 ECNECGRSFAHISVLKAHQRIH---TREKPYECNECGRSFTYNSALR-----AHQRIHTGRKPYECSDCEKTFA---------HNSALKIHQRIHTGEKP---YKCNECEKTFAHNSALRAHQNIHTG----EKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHER---IHTGEKPYEC---NVCG-----KTFVYKAA--LIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGE-KPYECNECGKTFADNSALRAHHRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHTGEKPYECDECGK 789 HSP 4 Score: 204.912 bits (520), Expect = 1.779e-57 Identity = 118/309 (38.19%), Postives = 168/309 (54.37%), Query Frame = -2
Query: 2 TVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKN-EIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKR--SGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLH-KHLRIHTGEKHFECNVCGK 916
T +KP++C CGK F + H R HT ++ + G+ A +I + I G K + + + + + +R +G+ +C+ CGK++ +L+ H + H G K ++C DC K F K R HL+ EKPYEC+ CGK FS +S ++ H VH + ++CNVCGK F + +L H RIHTGEK ++C+ CGK F+Q + L H RIHTGE+P++C CGKAF Q L+ H RIHTGEKPY+C+ CGK F + L H R+HT EK CN GK
Sbjct: 525 TGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQR----IHTGEKPYECNECGKTFSQ----------RTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHTGE-KPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHTGEKPYECDECGKTFVRKAALRVHHTRMHTREKTLACNGFGK 818 HSP 5 Score: 176.792 bits (447), Expect = 9.877e-48 Identity = 128/420 (30.48%), Postives = 194/420 (46.19%), Query Frame = -2
Query: 83 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSID-PLSSEFNVTDRFDDSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLG-----------NYDHHMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKRSGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHH-RIHTGEKPYDCNVCGKA 1303
EC CG+ F + L HQRIH S C +S + R K + K N + I K S+ G + H E P + K+ L+ E + G +KP++C CGK F + H R HT ++ + T + A++R I G K + + ++ ++ R+ +G+ +C+ CGK++ L+ H++T +G K ++C++C K F + + H + EKPYEC CGK F+ S+L +H +H + ++CN CGK F LS H RIHTGEKP++C+ CGKAF Q++TL+VH RIHTGE+P++C CGK F + L+ HH R+HT EK CN GK+
Sbjct: 419 ECNECGRSFTYNSALRAHQRIHTGRKPYECSDCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGEKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSY---LSGHERIHTG----EKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQR---IHTGEKPYECNECGKTFADN----SALRAHHRI----HTGEKPYECNDCGKTFSKTSHLRAHLRTRSGE-KPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHTGEKPYECDECGKTFVRKAALRVHHTRMHTREKTLACNGFGKS 819 HSP 6 Score: 145.206 bits (365), Expect = 6.164e-37 Identity = 92/250 (36.80%), Postives = 120/250 (48.00%), Query Frame = -2
Query: 2 CGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHL-EKNC-------------------------------------------------FQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 601
C KS+ + L +H + H+G K +Q +C K F + H K YEC CGK F S+L+ H +H EK C ++C CGK F + L H RIHTGEKP++C C K F+ T L VH R+HTGE+P++C CGK+F L+ H RIHTGEKPY+C+ C K F+ S L H RIHTGEK +ECN CG+
Sbjct: 149 CRKSFYWKAHLIQHERPHSG-EKTYQYEECAKSFCSSSHPIQHPGTYVGFKLYECNECGKAFCQNSNLSKHLRIHTKEKPCDNNGCGRSYKSPLIGHQKTDAEMELCGGSEYGKTSHLKGHQRILMGEKPYECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTFSHKTHLSVHQRVHTGEKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHRIHTGEKPYECNECGR 397 The following BLAST results are available for this feature:
BLAST of TCONS_00021983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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