TCONS_00021983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021983
Unique NameTCONS_00021983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021983 ID=TCONS_00021983|Name=TCONS_00021983|organism=Clytia hemisphaerica|type=transcript|length=1415bp
CTTTACCACAAACATTgcattcaaaatgtttttcacCAGTGTGGATACGA
AGGTGTTTATGAAGGTTGCTTAGATCGGAAAAGGCCTTCCCACAAACATT
GCAGTCATATGGTTTTTCACCTGTGTGGATACGATGATGTCTCTTTAAAT
TATGTGCCTGTTTAAAAGCTTTCCCACAAACAGTGCATTTGTGAGGTCTT
TCACCAGTGTGGATGCGAAGATGCACTTGCAAAGTAGTTGACTGATTAAA
AGCTTTCCCACAAACATGGCATTTAAAAGGCTTTTCACCAGTATGGATCC
GTAGGTGTCGTGATAAACTTTGAGAAAACTTGAATCCTTTACCACAAACA
TTACActgaaaacaatttttctccAGATGAACAGCTGAGTGAATTGCAAG
TGATGACTCAATTGAAAATCTCTTCCCACAAGTAGTGCATTCATATGGCT
TTTCACActtaccatttttcaaatgagTTCTAAAAAAACGAGCTTTGTCA
AACTCTTTTCTACAATCTGCACATTGCCAAATTTTACGAGATCCATTGTG
CGTTTTAATATGTTTTTGAAGTGAAAGTAAATACAAGTATGATTTTCCAC
AGATATGGCACTTCAACTGGTCTTGACCGGATCGTTTATCTACAAACATT
CGATCTTTACATTTCATAACAAATGACTGAAGATGATCTTCATCCATGCT
AACATTATTTGACTTTACCTGTAAAGTTTTTAGACCTCCATCAATACTCA
GTTTCCTTTTATTTGCTGAAATGATAGTAGCATTTCCTCCCACTTGTTGC
CCTGCTATTTCATTTTTGGATTCATCATTTGTATGGTACCGGCTGTGTGC
AGCAAAGTTTTTTACAAATTGAAACAGTTTTCCACAAAAACCACACTTGA
AAGGTTTATCGACAGTTCCAGCACCATCTGAAACTTCTTCTATAGAGTTC
AAATCATCATGATTGGTCTTAACGTCAATTAAATTATTAACTTGAAGATT
TAAATTGGGATTTTCATCCATATGATGATCATAGTTACCTAAATCAGAGT
TTAATGACTCTTTGTTAGGAGCTTTAATACCACTAGCCGATTCTTCTGTT
ACATTCTGGTCAATGTACTTGGAGAGAGAATGAAACTTCTTCGTAGAAGT
GCTATCGTCAAATCTGTCAGTAACATTAAATTCGGAAGATAATGGATCGA
TAGAGCACAAACTTTCATTATCATTAGAATCAATGTCGTGTATACGTTGA
TGTTTAATCAAATTGGTTCTCTTTTTGAACATTTTACCACACACAGTGCA
TTCATTTTTCACTGATTCTTTTGTCATCTGATTACTTTTAGATCTGGAAA
TGGCTTGTTGCTTCTTTCTACGTGTTTGCATTTTTAGAAATATAATCCTC
AAACCTCTTACTTTT
Run BLAST on NCBI

transcript from alignment at sc0000401:79164..80578-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021983 ID=TCONS_00021983|Name=TCONS_00021983|organism=Clytia hemisphaerica|type=transcript|length=1415bp|location=Sequence derived from alignment at sc0000401:79164..80578- (Clytia hemisphaerica)
CTTTACCACAAACATTGCATTCAAAATGTTTTTCACCAGTGTGGATACGA AGGTGTTTATGAAGGTTGCTTAGATCGGAAAAGGCCTTCCCACAAACATT GCAGTCATATGGTTTTTCACCTGTGTGGATACGATGATGTCTCTTTAAAT TATGTGCCTGTTTAAAAGCTTTCCCACAAACAGTGCATTTGTGAGGTCTT TCACCAGTGTGGATGCGAAGATGCACTTGCAAAGTAGTTGACTGATTAAA AGCTTTCCCACAAACATGGCATTTAAAAGGCTTTTCACCAGTATGGATCC GTAGGTGTCGTGATAAACTTTGAGAAAACTTGAATCCTTTACCACAAACA TTACACTGAAAACAATTTTTCTCCAGATGAACAGCTGAGTGAATTGCAAG TGATGACTCAATTGAAAATCTCTTCCCACAAGTAGTGCATTCATATGGCT TTTCACACTTACCATTTTTCAAATGAGTTCTAAAAAAACGAGCTTTGTCA AACTCTTTTCTACAATCTGCACATTGCCAAATTTTACGAGATCCATTGTG CGTTTTAATATGTTTTTGAAGTGAAAGTAAATACAAGTATGATTTTCCAC AGATATGGCACTTCAACTGGTCTTGACCGGATCGTTTATCTACAAACATT CGATCTTTACATTTCATAACAAATGACTGAAGATGATCTTCATCCATGCT AACATTATTTGACTTTACCTGTAAAGTTTTTAGACCTCCATCAATACTCA GTTTCCTTTTATTTGCTGAAATGATAGTAGCATTTCCTCCCACTTGTTGC CCTGCTATTTCATTTTTGGATTCATCATTTGTATGGTACCGGCTGTGTGC AGCAAAGTTTTTTACAAATTGAAACAGTTTTCCACAAAAACCACACTTGA AAGGTTTATCGACAGTTCCAGCACCATCTGAAACTTCTTCTATAGAGTTC AAATCATCATGATTGGTCTTAACGTCAATTAAATTATTAACTTGAAGATT TAAATTGGGATTTTCATCCATATGATGATCATAGTTACCTAAATCAGAGT TTAATGACTCTTTGTTAGGAGCTTTAATACCACTAGCCGATTCTTCTGTT ACATTCTGGTCAATGTACTTGGAGAGAGAATGAAACTTCTTCGTAGAAGT GCTATCGTCAAATCTGTCAGTAACATTAAATTCGGAAGATAATGGATCGA TAGAGCACAAACTTTCATTATCATTAGAATCAATGTCGTGTATACGTTGA TGTTTAATCAAATTGGTTCTCTTTTTGAACATTTTACCACACACAGTGCA TTCATTTTTCACTGATTCTTTTGTCATCTGATTACTTTTAGATCTGGAAA TGGCTTGTTGCTTCTTTCTACGTGTTTGCATTTTTAGAAATATAATCCTC AAACCTCTTACTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012337XLOC_012337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021983-exon-sc0000401-1575043694:79164..80578TCONS_00021983-exon-sc0000401-1575043694:79164..80578Clytia hemisphaericaexon
TCONS_00021983-exon-sc0000401-1510915933:79164..80578TCONS_00021983-exon-sc0000401-1510915933:79164..80578Clytia hemisphaericaexon
TCONS_00021983-exon-sc0000401-1491911889:79164..80578TCONS_00021983-exon-sc0000401-1491911889:79164..80578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:79164..80578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7453 1.41943 1.21808 0.449639 0.119014 0.0313489 0.34039 0.419059 0.421425 0.174551 0.357649 0.772559 0.644172 0.512872 0.708361 0.518513 0.245204 0.773032 0.0989507 0.130894 0.534278 0.398124 1.05061 1.71105 0.221091 0.519515 0.0403375 0.181536 0.845111 0.856472
Blast
BLAST of TCONS_00021983 vs. Swiss-Prot (Human)
Match: Z658B (Zinc finger protein 658B OS=Homo sapiens GN=ZNF658B PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.868e-65
Identity = 149/435 (34.25%), Postives = 218/435 (50.11%), Query Frame = -2
Query:    2 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSIDPLSSEFNVTDRFDDSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLGNYDH-HMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKRSGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 1303
            EC  CGK F K ++L  HQRIH  +       C                + T + K H LS +   +  E+           + NS L  +   H  E P    + ++      ++  L +   +  G    +KP++C  CG+ F  +    AH R HT ++        + G + T  SA +    I  G K  +          D  ++F      ++     +G+   KC+ C K++ +  +L+ H   H G  K+++C++C K F +     TH +    EKPYEC+ CGK FS +S L+ H  +H  +  ++CNVCGK F +  +L  H RIHTGEKP++C+ CGK F+Q T L  H RIHTGE+P++C  CGK F     L+ HHRIHTGEKPY+CN CGK FS  S+L  HLR  +GEK +EC+ CGK
Sbjct:  279 ECIECGKTFSKTSHLRAHQRIHTGEKPYECVEC----------------EKTFSHKTH-LSVHQRVHTGEKPYECNDCGKSFTYNSALRAHQRIHTGEKP---YECSDCEKTFAHNSALRAHHRIHTG----EKPYECNECGRSFAHISVLKAHQRIHTREKP---YECNECGRSFTYNSALRAHQRIHTGRKPYECS--------DCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGE-KLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGK 677          

HSP 2 Score: 222.631 bits (566), Expect = 9.499e-64
Identity = 152/440 (34.55%), Postives = 218/440 (49.55%), Query Frame = -2
Query:    2 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSID---PLSSEFNVTDRFD--DSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLGNYDH-HMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKRSGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 1303
            EC  CGK F + +NL KH RIH  +   + + C      PL          +    +   K   L  +    + E+    I+     S  S L  +   H  E P   ++       KT+   L+  + V  G    +KP++C  CGK F +     AH R HT ++       ++   + + + A+ R   I  G K  +   N       H+   V+K   R+   ++      +C+ CG+S+ Y  +L+ H + H G RK ++C+DC K F      + H +    EKPY+C  C K F+  S+L  H  +H  +  ++C+ CGK F     LS H RIHTGEKP++C  CGK F+Q + L  H RIHTGE+P++C VCGK F     L  H RIHTGEKPY+CN CGK FS  ++L  H RIHTGEK +ECN CGK
Sbjct:  201 ECNECGKAFCQNSNLSKHLRIHTKEKPCDNNGCGRSYKSPLIGHQKTDAEMELCGGSEYGKTSHLKGHQRILMGEKPYECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTFSHKTH---LSVHQRVHTG----EKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHR---IHTGEKPYEC--NECGRSFAHIS--VLKAHQRIHTREKP----YECNECGRSFTYNSALRAHQRIHTG-RKPYECSDCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGEKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGEKPYECNECGK 621          

HSP 3 Score: 204.912 bits (520), Expect = 1.512e-57
Identity = 148/437 (33.87%), Postives = 217/437 (49.66%), Query Frame = -2
Query:    2 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSIDPLSSEFNVTDRFDDSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLGNYDH-HMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKR--SGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 1303
            EC  CG+ F   + L  HQRIH   + +    C+    S  +N   R     + ++ H+  K  + +  E++ +          NS L  +   H  E P    + N       ++  L + + +  G    +K ++C  CGK F      + H R HT ++        +     + +S ++R   I  G K  +    NV       ++FV K    + V +R  +G+   +C+ CGK++     L  H + H G  K ++C +C K F      R H +    EKPYEC  CGK FS  S L  H      +  ++C+ CGK F     +S H R+HTGEKP++C+VCGK F  ++TL+VH RIHTGE+ ++C  CGK F Q  +L  H RIHTGEKPY+CN CGKAF+  S L  H RIHTGEK +EC+ CGK
Sbjct:  391 ECNECGRSFAHISVLKAHQRIH---TREKPYECNECGRSFTYNSALR-----AHQRIHTGRKPYECSDCEKTFA---------HNSALKIHQRIHTGEKP---YKCNECEKTFAHNSALRAHQNIHTG----EKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSYLSGHER---IHTGEKPYEC---NVCG-----KTFVYKAA--LIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQRIHTGE-KPYECNECGKTFADNSALRAHHRIHTGEKPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHTGEKPYECDECGK 789          

HSP 4 Score: 204.912 bits (520), Expect = 1.779e-57
Identity = 118/309 (38.19%), Postives = 168/309 (54.37%), Query Frame = -2
Query:    2 TVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKN-EIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKR--SGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLH-KHLRIHTGEKHFECNVCGK 916
            T +KP++C  CGK F      + H R HT ++     + G+     A +I   +    I  G K  +      +  +          +  +   +R  +G+   +C+ CGK++    +L+ H + H G  K ++C DC K F K    R HL+    EKPYEC+ CGK FS +S ++ H  VH  +  ++CNVCGK F  + +L  H RIHTGEK ++C+ CGK F+Q + L  H RIHTGE+P++C  CGKAF Q   L+ H RIHTGEKPY+C+ CGK F   + L   H R+HT EK   CN  GK
Sbjct:  525 TGEKPYECSKCGKTFSQKSYLSGHERIHTGEKPYECNVCGKTFVYKAALIVHQR----IHTGEKPYECNECGKTFSQ----------RTHLCAHQRIHTGEKPYECNECGKTFADNSALRAHHRIHTGE-KPYECNDCGKTFSKTSHLRAHLRTRSGEKPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHTGEKPYECDECGKTFVRKAALRVHHTRMHTREKTLACNGFGK 818          

HSP 5 Score: 176.792 bits (447), Expect = 9.877e-48
Identity = 128/420 (30.48%), Postives = 194/420 (46.19%), Query Frame = -2
Query:   83 ECTVCGKMFKKRTNLIKHQRIHDIDSNDNESLCSID-PLSSEFNVTDRFDDSTSTKKFHSLSKYIDQNVTEESASGIKAPNKESLNSDLG-----------NYDHHMDENPNLNLQVNNLIDVKTNHDDLNSIEEVSDGAGTVDKPFKCGFCGKLFQFVKNFAAHSRYHTNDESKNEIAGQQVGGNATIISANKRKLSIDGGLKTLQVKSNNVSMDEDHLQSFVMKCKDRMFVDKRSGQDQLKCHICGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHLEKNCFQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHH-RIHTGEKPYDCNVCGKA 1303
            EC  CG+ F   + L  HQRIH        S C      +S   +  R        K +   K    N    +   I    K    S+ G           +   H  E P    +       K+    L+  E +  G    +KP++C  CGK F +      H R HT ++        +     T + A++R   I  G K  +      +  ++      ++   R+     +G+   +C+ CGK++     L+ H++T +G  K ++C++C K F +  +   H +    EKPYEC  CGK F+  S+L +H  +H  +  ++CN CGK F     LS H RIHTGEKP++C+ CGKAF Q++TL+VH RIHTGE+P++C  CGK F +   L+ HH R+HT EK   CN  GK+
Sbjct:  419 ECNECGRSFTYNSALRAHQRIHTGRKPYECSDCEKTFAHNSALKIHQRIHTGEKPYKCNECEKTFAHNSALRAHQNIHTGEKLYECSECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTFSQKSY---LSGHERIHTG----EKPYECNVCGKTFVYKAALIVHQRIHTGEKPYECNECGKTFSQRTHLCAHQR---IHTGEKPYECNECGKTFADN----SALRAHHRI----HTGEKPYECNDCGKTFSKTSHLRAHLRTRSGE-KPYECSECGKTFSEKSYVSAHQRVHTGEKPYECNVCGKPFAHNSTLRVHQRIHTGEKSYECNDCGKTFSQKSHLSAHQRIHTGEKPYECNECGKAFAQNSTLRVHQRIHTGEKPYECDECGKTFVRKAALRVHHTRMHTREKTLACNGFGKS 819          

HSP 6 Score: 145.206 bits (365), Expect = 6.164e-37
Identity = 92/250 (36.80%), Postives = 120/250 (48.00%), Query Frame = -2
Query:    2 CGKSYLYLLSLQKHIKTHNGSRKIWQCADCRKEFDKARFFRTHLKNGKCEKPYECTTCGKRFSIESSLAIHSAVHL-EKNC-------------------------------------------------FQCNVCGKGFKFSQSLSRHLRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNLKRHHRIHTGEKPYDCNVCGKAFSDLSNLHKHLRIHTGEKHFECNVCGK 601
            C KS+ +   L +H + H+G  K +Q  +C K F  +     H       K YEC  CGK F   S+L+ H  +H  EK C                                                 ++C  CGK F  +  L  H RIHTGEKP++C  C K F+  T L VH R+HTGE+P++C  CGK+F     L+ H RIHTGEKPY+C+ C K F+  S L  H RIHTGEK +ECN CG+
Sbjct:  149 CRKSFYWKAHLIQHERPHSG-EKTYQYEECAKSFCSSSHPIQHPGTYVGFKLYECNECGKAFCQNSNLSKHLRIHTKEKPCDNNGCGRSYKSPLIGHQKTDAEMELCGGSEYGKTSHLKGHQRILMGEKPYECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTFSHKTHLSVHQRVHTGEKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHRIHTGEKPYECNECGR 397          
The following BLAST results are available for this feature:
BLAST of TCONS_00021983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
Z658B3.868e-6534.25Zinc finger protein 658B OS=Homo sapiens GN=ZNF658... [more]
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