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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021981 ID=TCONS_00021981|Name=TCONS_00021981|organism=Clytia hemisphaerica|type=transcript|length=1628bpRun BLAST on NCBI transcript from alignment at sc0000401:76444..78138- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021981 ID=TCONS_00021981|Name=TCONS_00021981|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at sc0000401:76444..78138- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021981 vs. Swiss-Prot (Human)
Match: ZN568 (Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 PE=2 SV=2) HSP 1 Score: 198.749 bits (504), Expect = 5.348e-58 Identity = 120/315 (38.10%), Postives = 169/315 (53.65%), Query Frame = -1
Query: 291 KPFHCTLCGKRFQFFNNLIAHSRFHTKN----------SFEKNVNDI---KIHKQDVPKK-----KSVDTQETSDIKQIILNNTESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 1175
KP+ C CGK F +NLI H R HT +F + N I +IH + P + KS +Q+ + I+ ++ E Y+ GR + V + RS G+ KC+ CGK++ Q HM +H+ + + C+ CGK F H+++ EKPYEC CG+ FS + +L H +H E + C+ CGK F +SNL +H R+HTG KP+ C VC KAF Q SNL H +IHTGE+P+ C CGKAF Q +L H +IHTGEKPF+CN CGK F++ + L H+R H +
Sbjct: 276 KPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSF-SQKQNLIEHEKIHTGEKPYACNECGRAFSRM-----SSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHT-GEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGE 583 HSP 2 Score: 45.4394 bits (106), Expect = 5.348e-58 Identity = 20/29 (68.97%), Postives = 21/29 (72.41%), Query Frame = -3
Query: 166 HTGEKPFECNVCGKTFNQSAGLKTHLRIH 252
HTGEKPFECN CGK F+Q A L H R H
Sbjct: 608 HTGEKPFECNECGKAFSQRASLSIHKRGH 636 HSP 3 Score: 189.119 bits (479), Expect = 1.414e-54 Identity = 114/314 (36.31%), Postives = 164/314 (52.23%), Query Frame = -1
Query: 291 KPFHCTLCGKRFQFFNNLIAHSRFHTKN----------SFEKNVNDIKIHKQDVPKKK-------SVDTQETSDIKQIILNNTESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 1175
KP+ C CGK F NLI H + HT +F + N I+ H+ +K +Q+++ I+ ++ E Y G+ K + ++ G+ C+ CG+++ ++ S+ HM +H+ + ++C CGK F +F H++S EKPY C+ CG+ FS SSL+ H H E + C CGK F NL H ++HTG KP++C C KAF Q SNL H RIHTGE+P+ CTVCGKAF Q +L H +IHTGEKP+ CN CGK F+Q L H +IH +
Sbjct: 248 KPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQ-----KQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHT-GEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGE 555 HSP 4 Score: 43.5134 bits (101), Expect = 1.414e-54 Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = -3
Query: 166 IHTGEKPFECNVCGKTFNQSAGLKTHLRIH 255
IHTGEKPF+CN CGK F++ + L H+R H
Sbjct: 551 IHTGEKPFKCNECGKAFSRISSLTLHVRSH 580 HSP 5 Score: 185.267 bits (469), Expect = 1.522e-50 Identity = 122/338 (36.09%), Postives = 165/338 (48.82%), Query Frame = -1
Query: 291 KPFHCTLCGKRFQFFNNLIAHSRFHTKN----------SFEKNVNDI---KIHKQDVPKKKSVDTQETSDIKQIILNNTESKYSNINQGRHVQSLFMKCKDQVFV-DKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHH---------------------------HQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 1175
KP+ C C K F +NLI H R HT SF + N I KIH + P + + S + + L+ + F +C VF+ RS G+ C CGK++ Q SL HM H+ + + ++C+ CGK F H + EKPY CTVCG+ FS +S+L++H +H E ++CN CGK F NL +H ++HTG KPFKC+ C KAF + S+L +H+R HTGE+P++C CGKAF Q L H R HTGEKPFECN CGK F+Q A L H R H +
Sbjct: 304 KPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQC--SVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGHTGE 639 HSP 6 Score: 161.77 bits (408), Expect = 1.714e-46 Identity = 75/165 (45.45%), Postives = 103/165 (62.42%), Query Frame = -1
Query: 291 QCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 785
+C CG+ F ++ H + EKPYEC CG+ FS + +L H +H E + CN CGK F +SNL +H R+HTG KP+ C C KAF Q SNL H RIHTGE+P++C CGK+F Q +L H +IHTGEKP+ CN CG+ F++ + + H+R H +
Sbjct: 223 KCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGE 387 HSP 7 Score: 43.8986 bits (102), Expect = 1.714e-46 Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = -3
Query: 157 HTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 252
HTGEKP+ C+ CGK F+QS+ L H+R H A+
Sbjct: 412 HTGEKPYVCSECGKAFSQSSSLTVHMRNHTAE 443 HSP 8 Score: 156.377 bits (394), Expect = 6.583e-41 Identity = 78/195 (40.00%), Postives = 110/195 (56.41%), Query Frame = -1
Query: 291 LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 875
KC+ CG+ + L +H H+ + ++C CGK F + H K EKPY+C CG+ F S+L +H +H E + C C K F SNL +H R+HTG KP++C C K+F Q NL H +IHTGE+P+ C CG+AF + + H R HTGEKP++CN CGK F+Q + H+R H +
Sbjct: 222 FKCNQCGQDFSHKFDLIRHERIHA-GEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGE 415 HSP 9 Score: 141.739 bits (356), Expect = 1.053e-39 Identity = 68/139 (48.92%), Postives = 87/139 (62.59%), Query Frame = -1
Query: 291 PYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAK 707
P++C CG+ FS + L +H +H E + C CGK F NL H ++HTG KP+KC+ C KAF Q SNL H RIHTGE+P+ C C KAF Q +L H RIHTGEKP+EC CGK+F+Q L H +IH +
Sbjct: 221 PFKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGE 359 HSP 10 Score: 41.2022 bits (95), Expect = 1.053e-39 Identity = 20/53 (37.74%), Postives = 29/53 (54.72%), Query Frame = -3
Query: 97 IHTGEKPFECNVCGKTFNQSAGLKTHLRIHIAKDSI*MNSI*SIKFYESLFII 255
IHTGEKP+ CN CG+ F++ + + H+R H + N S+FII
Sbjct: 355 IHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFII 407 HSP 11 Score: 150.214 bits (378), Expect = 8.734e-39 Identity = 96/271 (35.42%), Postives = 135/271 (49.82%), Query Frame = -1
Query: 372 KPFHCTLCGKRFQFFNNLIAHSRFHTKNSFEKNVNDIKIHKQDVPKKKSVDTQETSDIKQIILNNT-ESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEK 1175
KP+ C CGK F + I H R HT K V + ++S + + N+T E Y G+ K+ + ++ G+ +C CGK+++Q+ +L +H H+ + + C CGK F + +H K EKPY C CG+ FS +L +H +H E F CN CGK F IS+L H R HTG KP++C+ C KAF Q S L +H+R HTGE+P +C CGKAF Q L H R HTGE+
Sbjct: 388 KPYKCNKCGKAFSQCSVFIIHMRSHTGE------------KPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSR-----KENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHT-GEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGHTGER 640 The following BLAST results are available for this feature:
BLAST of TCONS_00021981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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