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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021974 ID=TCONS_00021974|Name=TCONS_00021974|organism=Clytia hemisphaerica|type=transcript|length=1453bp
CTCTACACCCTCAAGACAAGATGGCGAGAGAAAGTTTACTATTTTTCCTG
TTGGCTCTCCACTGTTGTGAAGCCTTCTACAATGGTGATGTACCAAGAAG
ACGGAGTGAGGCTTCAAGACTTTTGATGGCTAAAGATGCTTCACAAAAAC
ATGCTTCAAGTGATACCTCAAGACTTTTGTTTGGTAAAGATGCTCCACAA
AGACATGTTTCAAGTGATTCAAGACTTTTGTTTGGTAAAGATGCTCCACA
AAGACATGTTTCAAGTGATACCTCAAGGCTTTTGTTTGGTAAAGATGCTC
CACAAAGACATGTTTCAAGCGATACCTCACGACTTTTAATAGGTAAAGAT
GTTCCACAAAGACCCGCTGGAGGAAGCGATTCTCGTACCTCCTATACGGC
TCACCTAATGCCCACCTTAGGTAAAGATGAATATGTAAACGCTCTAAAAG
AAAGACTTCTCAATGATtaccgaatgaaattacttcaacaacaacgacaa
caacaacacCAGCAACAAGAGGACGATGACGAGCTATACTTTGATCACAG
TTTCAGGAGGGGAAACAACCCATCGGCATCGGCGTTTAGACGTCGATATA
GTGACCAAACGGGTCAACCATTAAGCGGTAGTCGTGATCAAAAAGTCCAT
CAAGATGAAAACGCCCGAGACACACTCGAAAAGAAACAACAGGCTAGTTT
AGACCAAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTACA
AAAAAATGATAACAGAAAAACGAGAAAAACAAGAATTCGCAAAGAAGAGT
GATGCACCAGTGAGCAATGATTTTGATGATGAAATCCTTCGACATTTAGt
tGAATTCAAACTGAAGAAAGAAGATCCAATGAAACGCATGAGACGATAAA
TATGTACAGGATTGATCGGTAACACCCATAACTCCATACCTCCATCTTGC
CTGTTCTCTTCAGGCCTGTACAGAGCTCAAGTTTTCGTGGATGAATCTAA
CATCTGTATTTAAGAATGTGAACAGACAAAGTGGATTTTGAATATTGACA
ATGGATGTTATCAACCTTGACCTCAGTGATgtgatatacacgttttttta
taaaatgttcttaacttgctcatGACATTTTGACCAGCGaagcctttgtt
cttatatggtttgttcttataaaaaacgtgtacgcaACCTTTCATTGTAA
AGATTTCCatttataatatatattatacttttttaaagataactttgTAT
GGATCTAATAATATTAAATAATAAGTTGTCTGAAACTGTTTCAGATTATA
GCttgatctttttttataagaacaattttataggAACAATGATGATCATa
aatgccaaaaataagaaACAGTTTTAGGAACAATGCTGAGACTAGAATGA
ATATATGTTGAGAATTTCTTTGAAAACCACGCTGGTTACGCGCTTTTAAT
GGG Run BLAST on NCBI protein sequence of TCONS_00021974-protein >TCONS_00021974-protein ID=TCONS_00021974-protein|Name=TCONS_00021974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
LHPQDKMARESLLFFLLALHCCEAFYNGDVPRRRSEASRLLMAKDASQKH
ASSDTSRLLFGKDAPQRHVSSDSRLLFGKDAPQRHVSSDTSRLLFGKDAP
QRHVSSDTSRLLIGKDVPQRPAGGSDSRTSYTAHLMPTLGKDEYVNALKE
RLLNDYRMKLLQQQRQQQHQQQEDDDELYFDHSFRRGNNPSASAFRRRYS
DQTGQPLSGSRDQKVHQDENARDTLEKKQQASLDQTKEELKRSLLKDFYK
KMITEKREKQEFAKKSDAPVSNDFDDEILRHLVEFKLKKEDPMKRMRR Run BLAST on NCBI transcript from alignment at sc0000401:233688..237652+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021974 ID=TCONS_00021974|Name=TCONS_00021974|organism=Clytia hemisphaerica|type=transcript|length=3965bp|location=Sequence derived from alignment at sc0000401:233688..237652+ (Clytia hemisphaerica)
CTCTACACCCTCAAGACAAGATGGCGAGAGAAAGTTTACTATTTTTCCTG
TTGGCTCTCCACTGTTGTGAAGCCTTCTACAATGGTGATGTACCAAGAAG
ACGGAGTGAGGCTTCAAGACTTTTGATGGCTAAAGATGCTTCACAAAAAC
ATGCTTCAAGTGATACCTCAAGACTTTTGTTTGGTAAAGATGCTCCACAA
AGACATGTTTCAAGTGATTCAAGACTTTTGTTTGGTAAAGATGCTCCACA
AAGACATGTTTCAAGTGATACCTCAAGGCTTTTGTTTGGTAAAGATGCTC
CACAAAGACATGTTTCAAGCGATACCTCACGACTTTTAATAGGTAAAGAT
GTTCCACAAAGACCCGCTGGAGGAAGCGATTCTCGTACCTCCTATACGGC
TCACCTAATGCCCACCTTAGGTAAAGATGAATATGTAAACGCTCTAAAAG
AAAGACTTCTCAATGATtaccgaatgaaattacttcaacaacaacgacaa
caacaacacCAGCAACAAGAGGACGATGACGAGCTATACTTTGATCACAG
TAAGTTTTATTACCGTTATTAGAATCTTTTGTAGGTGACCCTCTTCTTTT
ATTGTCACTctttttcaaagataaaaaatgtattaGAAAGGACGGAATCT
ACTTTGATCTACTTTGGGAAAACGACTGAAAAAGAGAAAGATTTGTGtga
atttctgacgtcagaaaagaaaaatgaagacacaacctcgtccccgtgta
ttccaggctttatttatgttcctaatggacgccagagaatattatctaac
gctgtcagtaagcatcaaaaagccgaAAATACGTAGGGAACGAGGTTGTT
GTCAACGTAGCGACCATTTTCTTCGAGAACAACTGaagtcacaatgaatt
ttcttgACGACGAACAACTCCTTGCTATATGTAAGCCCGTCGTTATGcca
aaagaaccaattgcatcgCGTAAAAACTCAGACCAGAAAAAATTGACTGC
ATAAAAATCTGAAATGCCAAAACTGTCTGCACAAATGGAAATCCGCATTT
CGCAAAAATGTGATGAAATTTCGACTAATTTCTAAATTCCCTTCTTTACA
TAGGTTTCAGGAGGGGAAACAACCCATCGGCATCGGCGTTTAGACGTCGA
TATAGTGACCAAACGGGTCAACCATTAAGCGGTAGTCGTGATCAAAAAGT
CCATCAAGATGAAAACGCCCGAGACACACTCGAAAAGAAACAACAGGCTA
GTTTAGACCAAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTC
TACAAAAAAATGATAACAGAAAAACGAGAAAAACAAGAATTCGCAAAGAA
GAGTGATGCACCAGTGAGCAATGATTTTGATGATGAAATCCTTCGACATT
TAGGTAGGTGATTAATTTGATTTAaccaagttttttgaaaaatgttactT
ACCCTGAAAGGAAGAATTTAATTGGGTGGACGgccgaaaaagaattttta
gtgggaatttaatttggtgttTGCCTCATTAACccttgtcgtatatatca
gacatgggctatgtagggcTATGTATGTTATTTTTGGTCTAAATCGTAGG
AatcggattgggcttcatggccaagctaaaaaaaatcaaaagggaGTCTT
TTCAGTGAGATTGTAATCTAATaagtcaaaaaatgcaaacttcccttacc
taccccccccccttagccGCCGCCCACCCCGCctttcctaaatcgggcgg
cgctgaaggcgcctaaaagaaagagaagaCTCTAAGTTATCCAACGGACt
gtaaacgagcttctaactccttctagatccggagatataagcctttaaag
tttgaactacactcattttgttttataagcatacggtaaatttcggctga
agctcactatgctaaagtaaagctcaattttgagcctcgactatgcttaa
ccctatgcttggtaaaaaaattatgaagggTTGGGGGGGGTAAAAATTTT
CGCGCATTTTCCCCTATCTTCAATCTTGagagaaatgaagacattctaca
TATTGTTTTCGAATTTTTACCATATGATTTCGAATCTTTATAGTGTTGTG
TTCATGTTTCAAAAACAGACTGCTACACTTTCTCTCTTGACTTGgtgctt
ttttatatataaatagTATATAGGGATTAATTTGGATTCTGTATAATACA
GTACTACttgtttgtaattctcttcttcattcttctgttattttctaaag
ttttggaaattatgattctaaaaatttctttggctgagcctcaaggtatg
cttagcatatgcttaatttttctggaaatttgagcttcagtatgcttata
aacgttatgcttataaaacaaaatgagcgtagcaattttctttaaaaaac
ttagaaaaaaatgaccgtggcacttaaagggttaagtaatcaataaacct
tttttttaagtCCTGAAATAACACTAATTCTGAAAATGCCTGGAATTGGT
TATTCCAGGTATAGTATGTACCCTCTATGTTGAGGATGTTTGACATCCAG
GGCAGTCTGGGAAATAGAAAAtccaagagggtctgtaaaatacgATGGTT
AATCCAGGGTGGTCATTAAAGGGAGGTCGAAAGTCCAGTGTGGTCAAGAA
AGGGGGGGTCGAAAGTCCAGGGTGTTCAGTAAAAggaggtcgaaaatcca
gggtggtccaaaaaatgaaaagCCAACTTTCTTAAAGAAGACCTCTTCGC
ATAGGGGTTATAATTTCGTTCTGGAATAGCCCTAAAGAATTAATTTGGTG
GGAATATAATTTGACGgatgatgcaaaaaaaattcaacggGAGCTTaatt
aatttggcggatttcaggcGATTCTCTCCCTTCAATGGTATACTACAAAG
GATTCAAAGAAGGCAGGAATACGAACAACTTTAGTTTGAAAGAAACAACA
ATTAATATAATTACTTTAGAGTTAGGACATTTTTGAAACAGAAAACAATT
TCTATTAACCTTAAACACTCACTTCTAACAGATTGGGACCCCTTctcact
gaaaaaattggccaaaataacgtccccagtggaaagttATCCACCAAATT
TTGTCCCCACTATAATTGATTAAATTAACCAagcctcactgcaaaatatt
atgctgttttccccatccccactgaatttgcTGACttggaaacaaaagaa
ttgaaatccccatccAAAAAGATTAATATGGGAAAATTAATTCCCATGGA
GTTTCAGTacgatatttttatccccactgactgaaaaaatcctaccgggt
ctgtgagaagggggtgtccttaaaaacccaaaaaaacggtatttcttttt
tttttcaacagttGAATTCAAACTGAAGAAAGAAGATCCAATGAAACGCA
TGAGACGATAAATATGTACAGGATTGATCGGTAACACCCATAACTCCATA
CCTCCATCTTGCCTGTTCTCTTCAGGCCTGTACAGAGCTCAAGTTTTCGT
GGATGAATCTAACATCTGTATTTAAGAATGTGAACAGACAAAGTGGATTT
TGAATATTGACAATGGATGTTATCAACCTTGACCTCAGTGATgtgatata
cacgtttttttataaaatgttcttaacttgctcatGACATTTTGACCAGC
GaagcctttgttcttatatggtttgttcttataaaaaacgtgtacgcaAC
CTTTCATTGTAAAGATTTCCatttataatatatattatacttttttaaag
ataactttgTATGGATCTAATAATATTAAATAATAAGTTGTCTGAAACTG
TTTCAGATTATAGCttgatctttttttataagaacaattttataggAACA
ATGATGATCATaaatgccaaaaataagaaACAGTTTTAGGAACAATGCTG
AGACTAGAATGAATATATGTTGAGAATTTCTTTGAAAACCACGCTGGTTA
CGCGCTTTTAATGGG Coding sequence (CDS) from alignment at sc0000401:233688..237652+ >TCONS_00021974 ID=TCONS_00021974|Name=TCONS_00021974|organism=Clytia hemisphaerica|type=CDS|length=2691bp|location=Sequence derived from alignment at sc0000401:233688..237652+ (Clytia hemisphaerica)
CTACACCCTCAAGACAAGATGGCGAGAGAAAGTTTACTATTTTTCCTGTT
GGCTCTCCACTGTTGTGAAGCCTTCTACAATGGTGATGTACCAAGAAGAC
GGAGTGAGGCTTCAAGACTTTTGATGGCTAAAGATGCTTCACAAAAACAT
GCTTCAAGTGATACCTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAAG
ACATGTTTCAAGTGATTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAA
GACATGTTTCAAGTGATACCTCAAGGCTTTTGTTTGGTAAAGATGCTCCA
CAAAGACATGTTTCAAGCGATACCTCACGACTTTTAATAGGTAAAGATGT
TCCACAAAGACCCGCTGGAGGAAGCGATTCTCGTACCTCCTATACGGCTC
ACCTAATGCCCACCTTAGGTAAAGATGAATATGTAAACGCTCTAAAAGAA
AGACTTCTCAATGATtaccgaatgaaattacttcaacaacaacgacaaca
acaacacCAGCAACAAGAGGACGATGACGAGCTATACTTTGATCACAGTT
TCAGGAGGGGAAACAACCCATCGGCATCGGCGTTTAGACGTCGATATAGT
GACCAAACGGGTCAACCATTAAGCGGTAGTCGTGATCAAAAAGTCCATCA
AGATGAAAACGCCCGAGACACACTCGAAAAGAAACAACAGGCTAGTTTAG
ACCAAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTACAAA
AAAATGATAACAGAAAAACGAGAAAAACAAGAATTCGCAAAGAAGAGTGA
TGCACCAGTGAGCAATGATTTTGATGATGAAATCCTTCGACATTTAGttG
AATTCAAACTGAAGAAAGAAGATCCAATGAAACGCATGAGACGATAACTA
CACCCTCAAGACAAGATGGCGAGAGAAAGTTTACTATTTTTCCTGTTGGC
TCTCCACTGTTGTGAAGCCTTCTACAATGGTGATGTACCAAGAAGACGGA
GTGAGGCTTCAAGACTTTTGATGGCTAAAGATGCTTCACAAAAACATGCT
TCAAGTGATACCTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAAGACA
TGTTTCAAGTGATTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAAGAC
ATGTTTCAAGTGATACCTCAAGGCTTTTGTTTGGTAAAGATGCTCCACAA
AGACATGTTTCAAGCGATACCTCACGACTTTTAATAGGTAAAGATGTTCC
ACAAAGACCCGCTGGAGGAAGCGATTCTCGTACCTCCTATACGGCTCACC
TAATGCCCACCTTAGGTAAAGATGAATATGTAAACGCTCTAAAAGAAAGA
CTTCTCAATGATtaccgaatgaaattacttcaacaacaacgacaacaaca
acacCAGCAACAAGAGGACGATGACGAGCTATACTTTGATCACAGTTTCA
GGAGGGGAAACAACCCATCGGCATCGGCGTTTAGACGTCGATATAGTGAC
CAAACGGGTCAACCATTAAGCGGTAGTCGTGATCAAAAAGTCCATCAAGA
TGAAAACGCCCGAGACACACTCGAAAAGAAACAACAGGCTAGTTTAGACC
AAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTACAAAAAA
ATGATAACAGAAAAACGAGAAAAACAAGAATTCGCAAAGAAGAGTGATGC
ACCAGTGAGCAATGATTTTGATGATGAAATCCTTCGACATTTAGttGAAT
TCAAACTGAAGAAAGAAGATCCAATGAAACGCATGAGACGATAACTACAC
CCTCAAGACAAGATGGCGAGAGAAAGTTTACTATTTTTCCTGTTGGCTCT
CCACTGTTGTGAAGCCTTCTACAATGGTGATGTACCAAGAAGACGGAGTG
AGGCTTCAAGACTTTTGATGGCTAAAGATGCTTCACAAAAACATGCTTCA
AGTGATACCTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAAGACATGT
TTCAAGTGATTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAAGACATG
TTTCAAGTGATACCTCAAGGCTTTTGTTTGGTAAAGATGCTCCACAAAGA
CATGTTTCAAGCGATACCTCACGACTTTTAATAGGTAAAGATGTTCCACA
AAGACCCGCTGGAGGAAGCGATTCTCGTACCTCCTATACGGCTCACCTAA
TGCCCACCTTAGGTAAAGATGAATATGTAAACGCTCTAAAAGAAAGACTT
CTCAATGATtaccgaatgaaattacttcaacaacaacgacaacaacaaca
cCAGCAACAAGAGGACGATGACGAGCTATACTTTGATCACAGTTTCAGGA
GGGGAAACAACCCATCGGCATCGGCGTTTAGACGTCGATATAGTGACCAA
ACGGGTCAACCATTAAGCGGTAGTCGTGATCAAAAAGTCCATCAAGATGA
AAACGCCCGAGACACACTCGAAAAGAAACAACAGGCTAGTTTAGACCAAA
CGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTACAAAAAAATG
ATAACAGAAAAACGAGAAAAACAAGAATTCGCAAAGAAGAGTGATGCACC
AGTGAGCAATGATTTTGATGATGAAATCCTTCGACATTTAGttGAATTCA
AACTGAAGAAAGAAGATCCAATGAAACGCATGAGACGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021974-exon-sc0000401-1491911889:233688..234236 | TCONS_00021974-exon-sc0000401-1491911889:233688..234236 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1510915933:233688..234236 | TCONS_00021974-exon-sc0000401-1510915933:233688..234236 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1575043694:233688..234236 | TCONS_00021974-exon-sc0000401-1575043694:233688..234236 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1491911889:234791..235090 | TCONS_00021974-exon-sc0000401-1491911889:234791..235090 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1510915933:234791..235090 | TCONS_00021974-exon-sc0000401-1510915933:234791..235090 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1575043694:234791..235090 | TCONS_00021974-exon-sc0000401-1575043694:234791..235090 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1491911889:237049..237652 | TCONS_00021974-exon-sc0000401-1491911889:237049..237652 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1510915933:237049..237652 | TCONS_00021974-exon-sc0000401-1510915933:237049..237652 | Clytia hemisphaerica | exon |
| TCONS_00021974-exon-sc0000401-1575043694:237049..237652 | TCONS_00021974-exon-sc0000401-1575043694:237049..237652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:233688..237652 + |
Blast
The following BLAST results are available for this feature:
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