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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021973 ID=TCONS_00021973|Name=TCONS_00021973|organism=Clytia hemisphaerica|type=transcript|length=1167bp
TTTTATGGGTAGGTAAAGCGGAGTGTAAGCGAAAAtgttgttaatatttt
tcaCTATCACAGCCTTATGTCTTTGCAATGGGCATCTCTTGTTTGAAGAC
CAAAAACGTAGCCCACCTCGGGGCAGAGATGCCCCCTCTGATGCCCCACC
TCTTAGCGGAGATGCATTTAAAGAAAGACTTCTTAGAGATtaccgaatga
aattacttcaACAACAACGAGATCAACAACAAGAACACGATGACGAAGTA
TACTTTAATCACGGTTTCAGGAGGGGAAACAACCCATCGGCATCGGCGTT
TAGACGTCGATATAGTGACCAAACGGGTCAACCATTAAGCGGTAGTCGTG
ATCAAAAAGTCCATCAAGATGAAAACGCCCGAGACACACTCGAAAAGAAA
CAACAGGCTAGTTTAGACCAAACGAAAGAAGAATTAAAACGCAGCCTTTT
GAAAGATTTCTACAAAAAAATGATAACAGAAAAACGAGAAAAACAAGAAT
TCGCAAAGAAGAGTGATGCACCAGTGAGCAATGATTTTGATGATGAAATC
CTTCGACATTTAGttGAATTCAAACTGAAGAAAGAAGATCCAATGAAACG
CATGAGACGATAAATATGTACAGGATTGATCGGTAACACCCATAACTCCA
TACCTCCATCTTGCCTGTTCTCTTCAGGCCTGTACAGAGCTCAAGTTTTC
GTGGATGAATCTAACATCTGTATTTAAGAATGTGAACAGACAAAGTGGAT
TTTGAATATTGACAATGGATGTTATCAACCTTGACCTCAGTGATgtgata
tacacgtttttttataaaatgttcttaacttgctcatGACATTTTGACCA
GCGaagcctttgttcttatatggtttgttcttataaaaaacgtgtacgca
ACCTTTCATTGTAAAGATTTCCatttataatatatattatacttttttaa
agataactttgTATGGATCTAATAATATTAAATAATAAGTTGTCTGAAAC
TGTTTCAGATTATAGCttgatctttttttataagaacaattttataggAA
CAATGATGATCATaaatgccaaaaataagaaACAGTTTTAGGAACAATGC
TGAGACTAGAATGAATATATGTTGAGAATTTCTTTGAAAACCACGCTGGT
TACGCGCTTTTAATGGG Run BLAST on NCBI transcript from alignment at sc0000401:228568..237652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021973 ID=TCONS_00021973|Name=TCONS_00021973|organism=Clytia hemisphaerica|type=transcript|length=9085bp|location=Sequence derived from alignment at sc0000401:228568..237652+ (Clytia hemisphaerica)
TTTTATGGGTAGGTAAAGCGGAGTGTAAGCGAAAAtgttgttaatatttt
tcaCTATCACAGCCTTATGTCTTTGCAATGGGCATCTCTTGTTTGAAGAC
CAAAAACGTAGCCCACCTCGGGGCAGAGATGCCCCCTCTGATGCCCCACC
TCTTAGCGGAGATGCATTTAAAGAAAGACTTCTTAGAGATtaccgaatga
aattacttcaACAACAACGAGATCAACAACAAGAACACGATGACGAAGTA
TACTTTAATCACGGTAATGCTTTTCATGCTTATATATACaccttttttct
ttataagaatacattttataagaatctccatgatgaaaatggctcaaaaa
ttaagaataatgctaagaatatcaccatcatggtaTTTTGCtcctcaagc
taagaatgccatttttagacattttcaattaaaaattgtcaattactTAG
GCTCGACaatggcttcttcataaagacaaaagacagaaatatatttttcg
aatCCGGCATTCGGGAATAGCGTCAGGACCTACAGGCGACctagtagggt
tgggtatgggtgtggtttgggtgtggttatgTATCAAATTGGCTAGGatt
tgggttattatcagttagggttatgGTTGGATCGAATCCCATCTGCCCAT
CGGTGGCGATCTTTCGCTAAATCATTCAATCAattgaaaaacataaaaaa
agctCACTAAGTCCCAGAAAGTTAGAAAAattacgaacaagagactggaa
aatacgaaataagtccagatatgtctttcgtctttatgaaatcctcactg
aaaatattcaaataattCTATCCTCACTGctaaatattatgctatttttc
ccatcctactgaattttctgacttgaaaacaaaagaaggcCTGGAAAGCG
TCATAACTCGAGTTTTTCGTTACCCAGGTTTTATTCATAACTCTATTTCA
GGCATCCAGTTAAACAAATGAAATCATTCCGAAACTGCATTTATATTata
tgttttcaattttgattttatatttaaTCATTTCCCTAAAATGTTGTTTG
CTTCTCGAAATGGAGCACCTTTAAAGCTCTAGGTAGCAAAGTGTAttcat
ataaataaaagttcGCGAATCAACATCTCAAGTCTGACGGGTATAAATTT
TAAGAGATATAATTTAATGAAtaatttcaagtcaaatttcTGAATGGGCT
TCGGGAGGAGAAACGATCCATCTGAATACAAAACACGCCGACGAAATGAA
AACGACCCGAATACACTAGAAAAGAAACAACAGGCTAGTTTAGACCAAAC
CAAAGAACGATTAAAACGCAGCCTTTAGAAAGATTTCTACAAGTGTGAAA
GTGTAATGAAATTTCGACTAATTTCAACAATCCCTTCTTTCATAGGTTTC
AGAAGGAGAAACGACCCATCGGCATCGGCGATTAGACGTCGGTATAAAGA
TCAAAAAACGGGTCAACCATTAAGCGGTGGTCGTAATCAAAAATTGCACC
AAGATGAAAACGCCCGGTACACACTCGAAAAGAAACAACAGGCTAGTTTA
GATCAAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTACAA
AAAAATGATGACAGAAAAACGGGAAAAACAAGAATTCGCAAAGAAGAGTG
ATGCACCAGTGAGCGATGATTTTGATGATGAAATCCTTCGGCATTTAGGT
AGGTGATTGGTTCTAATTtaattaaagggataatcagtgaaaatcgtaaa
ttttactgcaaaatttgttgtaaaaatctgtcaaaaaactctaagggata
atcagatggtttaaGATTCTTCCTATAATCCTGAGGGAAACCTTCAAATC
CTTTTTTGTGTAACTCTTCCAAAGCCCTTAGGGGACTTTCAAAAAAcctg
ggggtactagggttggcggatgaggggtatgtgcgaaaaattaagaacaa
tttaagaacaatcatGAGGCCTGAAaatactcaatttcaagcaatttatg
gaaaatattgtaaaaattaattacaccctataaataagaaaagtATAAGA
ACAATTGGAGGCTCAAAGcgacaaaaaaataagaacagaggagcctcagc
aaaatttaaattgttctaataaaaaaactgtAAACTTGTTCTTTTAAAAG
CGAATGTTTCTGGTTTATGAAGCTTATTTCAAATCTCTCTAAAAAGTAGC
TTTTAAAAataggctcttccagaaaaaaaatttaatatggggggaaacat
tttttgaaaatttactccCGTACATTGTGAATTATGACCCCCGGCCAACA
CATCTCACCCCcgaacaagcatcagttgacccggaaattcaaaatttccc
ctaaacagagcaagttttCCCCCAAAACAAgacaaattttgcagattttt
cagaatttNACcctaaacagagcaagtttcCCCCAAAACAAgacaaattt
tgcagatttttcagaattttttatcCTCTACCCCGTGTACAAAAGTTTTC
TGAAAGAGCCCAATATAAGTATTTAATGTGCCACACCAATACCAGGTTTA
AACCAGGATTTTTAAATATGTACAGAAGTGGGTTGTTGGATCTTGACGAA
ATTTGTCACATTACCATTtttacaaaacaaagaaaatacagcaatagttt
aatttttctattttttttaacagTTGAATTCAAATTAAAGGATCCAATTA
TGCTTGGGAGAAGAAGAAGATTGTAGATGTTAGATCTGGGGATATCGAAA
AATCAAATTATCTGGAAAATTCGTCATTCGAGTTATCCTATTTGCAAAtg
gaaaaatattcaaaagtttttgtACGAGATTAACATTCATTCACTAGTAT
TATATGTTTATAGAAttgatttgatttaaatttcaaagttttttaatact
tttttacatattttttatatgtttGTCAATATATTCGCAAAAgaattatt
caattttcatcaaataataaAGTTTACCATGGTACATATTTTGATCAGCC
CTATTCTTCTTTGAACTTCCCCTAGAGGCTCAAATTCCCCATTTTATTGA
GTCCCACCAAACTATAAAGTCTTTCTTGAAAAGTTGGATCCCTAAAAAAT
ACGGGGGTCAATAGCAACCAACaacttgaaattaaaaattatctgCTCGG
AAAAGCAACTTTTCCTGTTCTTTTTTTGCCAGACTCCTAGATAAGTTtat
atgttcttaaaaaaatgttcCTGGAAATTTACATATTATGTTCTGATTAT
GAATAATGACTACTCGAAAAATTCATTTGATGAAATGTTTTAATTGAGCG
CCGAgatgctcctggaaaaaaagcATTGCTTCTACTTAAATTTTTACCTG
GATTCTTTAAGCAGGAGATATCCGAGATCTGCTGGAAAGGTAaagtgcaa
tttttcaaaagcaatCGATAGTTGTTTAGGGTCCAGccctgaaaatggct
aaaaattaattaacttGGCTTTAGCAAATTAGCCCTGAAACTGAGCATGA
ACCGAGAACGCAaccaaaaataactaaaaaaggGGCGTTTTCGGAATtaa
attttgaggtattttggACATAAAGTGAGATAAAAGGCCAAACACTTTTA
ATTAGCTCGtcttttttggctcaaaatccAAAAGCAACATTTAGGCTAAA
ATCCAGAAAATCCTTAGCAACTCCAGGCGTTACATATTTCAGctgcggct
ttcttatactatgctcgCAAACAATAAGTTCGAAAGCTGAGTGGTCACAA
ATCGCAAACTCGCTGTAAAAGCTGAAAGAAGAAGTGCAAAGACAGAAAGG
TCACAAAGGAATATGCGTGATGAACATAGGCAACCAAGACGTGGagattt
tatcaaacaaaataaTAAGCACTAGGGCAAAAGCGGTATAAAGTTTATTa
attgttttgagaaaaaaaattttgcttgtCCTGAGATTAAatagataatt
tttttgtttttctttgctgcCTTGTGTTGAATTTGAGTGCAAGATACGAA
GAATTTTGGGTTTTTAAcaaaattatacaaaatgtCTGTTAGTCTGACTG
GTATCACTTAGAAAAACACCATTGTAACCGACCAAATCTCATTATACTGT
ATAGAAGTTTCTGAAATTACATTAATCTGAAAAAGTCGAATGTGTCCACC
GCGCTgagctcaacttcagtattctTCTAACTATTCAAGGTCCAACAtcc
aattgagaaaaaaagatgTGCTATCAGACAGACACCGAAAGAATCTTTCT
AAATCCGACCAGATCTGATTATATTCCAGAGTGCCCCGAAATTTTAGCCT
CGTTCTGTTGAAAAACTCGTCTCCAGGCTCCAATGAtgtttttccccata
tctgagcctagatatgttTACAAGTGTAATACTtatgaaaaaaacatgta
atttgaAATAGAGATAAGAGATAATAATTTCATTTAATTATGGGTAACTC
TAATCGTGACTAAAAATCATTTGCAGCTTGCTCAATTATAAAGATGATTA
TTCAAAAAGAAAGTTGATNACACCATTGTAACCGACCAAATCTCATTATA
CTGTATAGAAGTTTCTGAAATTACATTAATCTGAAAAAGTCGAATGTGTC
CACCGCGCTgagctcaacttcagtattctTCTAACTATTCAAGGTCCAAC
ATCCAATTGTAGAAAAAAAGATGTGCTGTCAGACAGACACCGAAAGAATC
TTTCTAAATCCGACCAGATCATATTATATTCCAGAGTGCCCCGAAATTTT
AGCCTCGTTCTGTTGAAAAACTCGTCTCCAGGCTCCAATGAtgtttttcc
ccatatctgagcctagatatgttTACAAGTGTAATACTtatgaaaaaaac
atgtaatttgaAATAGAGATAAGAGATAATAATTTCATTTAATTATGGGT
AACTCTAATCGTGACTAAAAATCATTTGCAGCTTGCTCAATTATAAAGAT
GATTATTCAAAAAGAAAGTTGATCAAtttgttgttttaacgttcaaataa
cgttatttggacgttatgaatgctaaatggacgttgttttgacgttgtgt
gccggctcgTCACCAGCCCACTCAATTCTAGTGAAAATACTTTGATTACA
AACAAAATTAATGCAGTCTTCTCTACACCCTCAAGACAAGATGGCGAGAG
AAAGTTTACTATTTTTCCTGTTGGCTCTCCACTGTTGTGAAGCCTTCTAC
AATGGTGATGTACCAAGAAGACGGAGTGAGGCTTCAAGACTTTTGATGGC
TAAAGATGCTTCACAAAAACATGCTTCAAGTGATACCTCAAGACTTTTGT
TTGGTAAAGATGCTCCACAAAGACATGTTTCAAGTGATTCAAGACTTTTG
TTTGGTAAAGATGCTCCACAAAGACATGTTTCAAGTGATACCTCAAGGCT
TTTGTTTGGTAAAGATGCTCCACAAAGACATGTTTCAAGCGATACCTCAC
GACTTTTAATAGGTAAAGATGTTCCACAAAGACCCGCTGGAGGAAGCGAT
TCTCGTACCTCCTATACGGCTCACCTAATGCCCACCTTAGGTAAAGATGA
ATATGTAAACGCTCTAAAAGAAAGACTTCTCAATGATtaccgaatgaaat
tacttcaacaacaacgacaacaacaacacCAGCAACAAGAGGACGATGAC
GAGCTATACTTTGATCACAGTAAGTTTTATTACCGTTATTAGAATCTTTT
GTAGGTGACCCTCTTCTTTTATTGTCACTctttttcaaagataaaaaatg
tattaGAAAGGACGGAATCTACTTTGATCTACTTTGGGAAAACGACTGAA
AAAGAGAAAGATTTGTGtgaatttctgacgtcagaaaagaaaaatgaaga
cacaacctcgtccccgtgtattccaggctttatttatgttcctaatggac
gccagagaatattatctaacgctgtcagtaagcatcaaaaagccgaAAAT
ACGTAGGGAACGAGGTTGTTGTCAACGTAGCGACCATTTTCTTCGAGAAC
AACTGaagtcacaatgaattttcttgACGACGAACAACTCCTTGCTATAT
GTAAGCCCGTCGTTATGccaaaagaaccaattgcatcgCGTAAAAACTCA
GACCAGAAAAAATTGACTGCATAAAAATCTGAAATGCCAAAACTGTCTGC
ACAAATGGAAATCCGCATTTCGCAAAAATGTGATGAAATTTCGACTAATT
TCTAAATTCCCTTCTTTACATAGGTTTCAGGAGGGGAAACAACCCATCGG
CATCGGCGTTTAGACGTCGATATAGTGACCAAACGGGTCAACCATTAAGC
GGTAGTCGTGATCAAAAAGTCCATCAAGATGAAAACGCCCGAGACACACT
CGAAAAGAAACAACAGGCTAGTTTAGACCAAACGAAAGAAGAATTAAAAC
GCAGCCTTTTGAAAGATTTCTACAAAAAAATGATAACAGAAAAACGAGAA
AAACAAGAATTCGCAAAGAAGAGTGATGCACCAGTGAGCAATGATTTTGA
TGATGAAATCCTTCGACATTTAGGTAGGTGATTAATTTGATTTAaccaag
ttttttgaaaaatgttactTACCCTGAAAGGAAGAATTTAATTGGGTGGA
CGgccgaaaaagaatttttagtgggaatttaatttggtgttTGCCTCATT
AACccttgtcgtatatatcagacatgggctatgtagggcTATGTATGTTA
TTTTTGGTCTAAATCGTAGGAatcggattgggcttcatggccaagctaaa
aaaaatcaaaagggaGTCTTTTCAGTGAGATTGTAATCTAATaagtcaaa
aaatgcaaacttcccttacctaccccccccccttagccGCCGCCCACCCC
GCctttcctaaatcgggcggcgctgaaggcgcctaaaagaaagagaagaC
TCTAAGTTATCCAACGGACtgtaaacgagcttctaactccttctagatcc
ggagatataagcctttaaagtttgaactacactcattttgttttataagc
atacggtaaatttcggctgaagctcactatgctaaagtaaagctcaattt
tgagcctcgactatgcttaaccctatgcttggtaaaaaaattatgaaggg
TTGGGGGGGGTAAAAATTTTCGCGCATTTTCCCCTATCTTCAATCTTGag
agaaatgaagacattctacaTATTGTTTTCGAATTTTTACCATATGATTT
CGAATCTTTATAGTGTTGTGTTCATGTTTCAAAAACAGACTGCTACACTT
TCTCTCTTGACTTGgtgcttttttatatataaatagTATATAGGGATTAA
TTTGGATTCTGTATAATACAGTACTACttgtttgtaattctcttcttcat
tcttctgttattttctaaagttttggaaattatgattctaaaaatttctt
tggctgagcctcaaggtatgcttagcatatgcttaatttttctggaaatt
tgagcttcagtatgcttataaacgttatgcttataaaacaaaatgagcgt
agcaattttctttaaaaaacttagaaaaaaatgaccgtggcacttaaagg
gttaagtaatcaataaaccttttttttaagtCCTGAAATAACACTAATTC
TGAAAATGCCTGGAATTGGTTATTCCAGGTATAGTATGTACCCTCTATGT
TGAGGATGTTTGACATCCAGGGCAGTCTGGGAAATAGAAAAtccaagagg
gtctgtaaaatacgATGGTTAATCCAGGGTGGTCATTAAAGGGAGGTCGA
AAGTCCAGTGTGGTCAAGAAAGGGGGGGTCGAAAGTCCAGGGTGTTCAGT
AAAAggaggtcgaaaatccagggtggtccaaaaaatgaaaagCCAACTTT
CTTAAAGAAGACCTCTTCGCATAGGGGTTATAATTTCGTTCTGGAATAGC
CCTAAAGAATTAATTTGGTGGGAATATAATTTGACGgatgatgcaaaaaa
aattcaacggGAGCTTaattaatttggcggatttcaggcGATTCTCTCCC
TTCAATGGTATACTACAAAGGATTCAAAGAAGGCAGGAATACGAACAACT
TTAGTTTGAAAGAAACAACAATTAATATAATTACTTTAGAGTTAGGACAT
TTTTGAAACAGAAAACAATTTCTATTAACCTTAAACACTCACTTCTAACA
GATTGGGACCCCTTctcactgaaaaaattggccaaaataacgtccccagt
ggaaagttATCCACCAAATTTTGTCCCCACTATAATTGATTAAATTAACC
Aagcctcactgcaaaatattatgctgttttccccatccccactgaatttg
cTGACttggaaacaaaagaattgaaatccccatccAAAAAGATTAATATG
GGAAAATTAATTCCCATGGAGTTTCAGTacgatatttttatccccactga
ctgaaaaaatcctaccgggtctgtgagaagggggtgtccttaaaaaccca
aaaaaacggtatttcttttttttttcaacagttGAATTCAAACTGAAGAA
AGAAGATCCAATGAAACGCATGAGACGATAAATATGTACAGGATTGATCG
GTAACACCCATAACTCCATACCTCCATCTTGCCTGTTCTCTTCAGGCCTG
TACAGAGCTCAAGTTTTCGTGGATGAATCTAACATCTGTATTTAAGAATG
TGAACAGACAAAGTGGATTTTGAATATTGACAATGGATGTTATCAACCTT
GACCTCAGTGATgtgatatacacgtttttttataaaatgttcttaacttg
ctcatGACATTTTGACCAGCGaagcctttgttcttatatggtttgttctt
ataaaaaacgtgtacgcaACCTTTCATTGTAAAGATTTCCatttataata
tatattatacttttttaaagataactttgTATGGATCTAATAATATTAAA
TAATAAGTTGTCTGAAACTGTTTCAGATTATAGCttgatctttttttata
agaacaattttataggAACAATGATGATCATaaatgccaaaaataagaaA
CAGTTTTAGGAACAATGCTGAGACTAGAATGAATATATGTTGAGAATTTC
TTTGAAAACCACGCTGGTTACGCGCTTTTAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021973-exon-sc0000401-1491911889:228568..228830 | TCONS_00021973-exon-sc0000401-1491911889:228568..228830 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1510915933:228568..228830 | TCONS_00021973-exon-sc0000401-1510915933:228568..228830 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1575043694:228568..228830 | TCONS_00021973-exon-sc0000401-1575043694:228568..228830 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1491911889:234791..235090 | TCONS_00021973-exon-sc0000401-1491911889:234791..235090 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1510915933:234791..235090 | TCONS_00021973-exon-sc0000401-1510915933:234791..235090 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1575043694:234791..235090 | TCONS_00021973-exon-sc0000401-1575043694:234791..235090 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1491911889:237049..237652 | TCONS_00021973-exon-sc0000401-1491911889:237049..237652 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1510915933:237049..237652 | TCONS_00021973-exon-sc0000401-1510915933:237049..237652 | Clytia hemisphaerica | exon |
| TCONS_00021973-exon-sc0000401-1575043694:237049..237652 | TCONS_00021973-exon-sc0000401-1575043694:237049..237652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:228568..237652 + |
Blast
The following BLAST results are available for this feature:
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