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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021972 ID=TCONS_00021972|Name=TCONS_00021972|organism=Clytia hemisphaerica|type=transcript|length=1198bp
GACCTAAGAACCTCATCTTAAATATTCATTTTATGGGTAGGTAAAGCGGA
GTGTAAGCGAAAAtgttgttaatatttttcaCTATCACAGCCTTATGTCT
TTGCAATGGGCATCTCTTGTTTGAAGACCAAAAACGTAGCCCACCTCGGG
GCAGAGATGCCCCCTCTGATGCCCCACCTCTTAGCGGAGATGCATTTAAA
GAAAGACTTCTTAGAGATtaccgaatgaaattacttcaACAACAACGAGA
TCAACAACAAGAACACGATGACGAAGTATACTTTAATCACGGTTTCAGAA
GGAGAAACGACCCATCGGCATCGGCGATTAGACGTCGGTATAAAGATCAA
AAAACGGGTCAACCATTAAGCGGTGGTCGTAATCAAAAATTGCACCAAGA
TGAAAACGCCCGGTACACACTCGAAAAGAAACAACAGGCTAGTTTAGATC
AAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTACAAAAAA
ATGATGACAGAAAAACGGGAAAAACAAGAATTCGCAAAGAAGAGTGATGC
ACCAGTGAGCGATGATTTTGATGATGAAATCCTTCGGCATTTAGttGAAT
TCAAACTGAAGAAAGAAGATCCAATGAAACGCATGAGACGATAAATATGT
ACAGGATTGATCGGTAACACCCATAACTCCATACCTCCATCTTGCCTGTT
CTCTTCAGGCCTGTACAGAGCTCAAGTTTTCGTGGATGAATCTAACATCT
GTATTTAAGAATGTGAACAGACAAAGTGGATTTTGAATATTGACAATGGA
TGTTATCAACCTTGACCTCAGTGATgtgatatacacgtttttttataaaa
tgttcttaacttgctcatGACATTTTGACCAGCGaagcctttgttcttat
atggtttgttcttataaaaaacgtgtacgcaACCTTTCATTGTAAAGATT
TCCatttataatatatattatacttttttaaagataactttgTATGGATC
TAATAATATTAAATAATAAGTTGTCTGAAACTGTTTCAGATTATAGCttg
atctttttttataagaacaattttataggAACAATGATGATCATaaatgc
caaaaataagaaACAGTTTTAGGAACAATGCTGAGACTAGAATGAATATA
TGTTGAGAATTTCTTTGAAAACCACGCTGGTTACGCGCTTTTAATGGG Run BLAST on NCBI transcript from alignment at sc0000401:228540..237652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021972 ID=TCONS_00021972|Name=TCONS_00021972|organism=Clytia hemisphaerica|type=transcript|length=9113bp|location=Sequence derived from alignment at sc0000401:228540..237652+ (Clytia hemisphaerica)
GACCTAAGAACCTCATCTTAAATATTCATTTTATGGGTAGGTAAAGCGGA
GTGTAAGCGAAAAtgttgttaatatttttcaCTATCACAGCCTTATGTCT
TTGCAATGGGCATCTCTTGTTTGAAGACCAAAAACGTAGCCCACCTCGGG
GCAGAGATGCCCCCTCTGATGCCCCACCTCTTAGCGGAGATGCATTTAAA
GAAAGACTTCTTAGAGATtaccgaatgaaattacttcaACAACAACGAGA
TCAACAACAAGAACACGATGACGAAGTATACTTTAATCACGGTAATGCTT
TTCATGCTTATATATACaccttttttctttataagaatacattttataag
aatctccatgatgaaaatggctcaaaaattaagaataatgctaagaatat
caccatcatggtaTTTTGCtcctcaagctaagaatgccatttttagacat
tttcaattaaaaattgtcaattactTAGGCTCGACaatggcttcttcata
aagacaaaagacagaaatatatttttcgaatCCGGCATTCGGGAATAGCG
TCAGGACCTACAGGCGACctagtagggttgggtatgggtgtggtttgggt
gtggttatgTATCAAATTGGCTAGGatttgggttattatcagttagggtt
atgGTTGGATCGAATCCCATCTGCCCATCGGTGGCGATCTTTCGCTAAAT
CATTCAATCAattgaaaaacataaaaaaagctCACTAAGTCCCAGAAAGT
TAGAAAAattacgaacaagagactggaaaatacgaaataagtccagatat
gtctttcgtctttatgaaatcctcactgaaaatattcaaataattCTATC
CTCACTGctaaatattatgctatttttcccatcctactgaattttctgac
ttgaaaacaaaagaaggcCTGGAAAGCGTCATAACTCGAGTTTTTCGTTA
CCCAGGTTTTATTCATAACTCTATTTCAGGCATCCAGTTAAACAAATGAA
ATCATTCCGAAACTGCATTTATATTatatgttttcaattttgattttata
tttaaTCATTTCCCTAAAATGTTGTTTGCTTCTCGAAATGGAGCACCTTT
AAAGCTCTAGGTAGCAAAGTGTAttcatataaataaaagttcGCGAATCA
ACATCTCAAGTCTGACGGGTATAAATTTTAAGAGATATAATTTAATGAAt
aatttcaagtcaaatttcTGAATGGGCTTCGGGAGGAGAAACGATCCATC
TGAATACAAAACACGCCGACGAAATGAAAACGACCCGAATACACTAGAAA
AGAAACAACAGGCTAGTTTAGACCAAACCAAAGAACGATTAAAACGCAGC
CTTTAGAAAGATTTCTACAAGTGTGAAAGTGTAATGAAATTTCGACTAAT
TTCAACAATCCCTTCTTTCATAGGTTTCAGAAGGAGAAACGACCCATCGG
CATCGGCGATTAGACGTCGGTATAAAGATCAAAAAACGGGTCAACCATTA
AGCGGTGGTCGTAATCAAAAATTGCACCAAGATGAAAACGCCCGGTACAC
ACTCGAAAAGAAACAACAGGCTAGTTTAGATCAAACGAAAGAAGAATTAA
AACGCAGCCTTTTGAAAGATTTCTACAAAAAAATGATGACAGAAAAACGG
GAAAAACAAGAATTCGCAAAGAAGAGTGATGCACCAGTGAGCGATGATTT
TGATGATGAAATCCTTCGGCATTTAGGTAGGTGATTGGTTCTAATTtaat
taaagggataatcagtgaaaatcgtaaattttactgcaaaatttgttgta
aaaatctgtcaaaaaactctaagggataatcagatggtttaaGATTCTTC
CTATAATCCTGAGGGAAACCTTCAAATCCTTTTTTGTGTAACTCTTCCAA
AGCCCTTAGGGGACTTTCAAAAAAcctgggggtactagggttggcggatg
aggggtatgtgcgaaaaattaagaacaatttaagaacaatcatGAGGCCT
GAAaatactcaatttcaagcaatttatggaaaatattgtaaaaattaatt
acaccctataaataagaaaagtATAAGAACAATTGGAGGCTCAAAGcgac
aaaaaaataagaacagaggagcctcagcaaaatttaaattgttctaataa
aaaaactgtAAACTTGTTCTTTTAAAAGCGAATGTTTCTGGTTTATGAAG
CTTATTTCAAATCTCTCTAAAAAGTAGCTTTTAAAAataggctcttccag
aaaaaaaatttaatatggggggaaacattttttgaaaatttactccCGTA
CATTGTGAATTATGACCCCCGGCCAACACATCTCACCCCcgaacaagcat
cagttgacccggaaattcaaaatttcccctaaacagagcaagttttCCCC
CAAAACAAgacaaattttgcagatttttcagaatttNACcctaaacagag
caagtttcCCCCAAAACAAgacaaattttgcagatttttcagaatttttt
atcCTCTACCCCGTGTACAAAAGTTTTCTGAAAGAGCCCAATATAAGTAT
TTAATGTGCCACACCAATACCAGGTTTAAACCAGGATTTTTAAATATGTA
CAGAAGTGGGTTGTTGGATCTTGACGAAATTTGTCACATTACCATTttta
caaaacaaagaaaatacagcaatagtttaatttttctattttttttaaca
gTTGAATTCAAATTAAAGGATCCAATTATGCTTGGGAGAAGAAGAAGATT
GTAGATGTTAGATCTGGGGATATCGAAAAATCAAATTATCTGGAAAATTC
GTCATTCGAGTTATCCTATTTGCAAAtggaaaaatattcaaaagtttttg
tACGAGATTAACATTCATTCACTAGTATTATATGTTTATAGAAttgattt
gatttaaatttcaaagttttttaatacttttttacatattttttatatgt
ttGTCAATATATTCGCAAAAgaattattcaattttcatcaaataataaAG
TTTACCATGGTACATATTTTGATCAGCCCTATTCTTCTTTGAACTTCCCC
TAGAGGCTCAAATTCCCCATTTTATTGAGTCCCACCAAACTATAAAGTCT
TTCTTGAAAAGTTGGATCCCTAAAAAATACGGGGGTCAATAGCAACCAAC
aacttgaaattaaaaattatctgCTCGGAAAAGCAACTTTTCCTGTTCTT
TTTTTGCCAGACTCCTAGATAAGTTtatatgttcttaaaaaaatgttcCT
GGAAATTTACATATTATGTTCTGATTATGAATAATGACTACTCGAAAAAT
TCATTTGATGAAATGTTTTAATTGAGCGCCGAgatgctcctggaaaaaaa
gcATTGCTTCTACTTAAATTTTTACCTGGATTCTTTAAGCAGGAGATATC
CGAGATCTGCTGGAAAGGTAaagtgcaatttttcaaaagcaatCGATAGT
TGTTTAGGGTCCAGccctgaaaatggctaaaaattaattaacttGGCTTT
AGCAAATTAGCCCTGAAACTGAGCATGAACCGAGAACGCAaccaaaaata
actaaaaaaggGGCGTTTTCGGAATtaaattttgaggtattttggACATA
AAGTGAGATAAAAGGCCAAACACTTTTAATTAGCTCGtcttttttggctc
aaaatccAAAAGCAACATTTAGGCTAAAATCCAGAAAATCCTTAGCAACT
CCAGGCGTTACATATTTCAGctgcggctttcttatactatgctcgCAAAC
AATAAGTTCGAAAGCTGAGTGGTCACAAATCGCAAACTCGCTGTAAAAGC
TGAAAGAAGAAGTGCAAAGACAGAAAGGTCACAAAGGAATATGCGTGATG
AACATAGGCAACCAAGACGTGGagattttatcaaacaaaataaTAAGCAC
TAGGGCAAAAGCGGTATAAAGTTTATTaattgttttgagaaaaaaaattt
tgcttgtCCTGAGATTAAatagataatttttttgtttttctttgctgcCT
TGTGTTGAATTTGAGTGCAAGATACGAAGAATTTTGGGTTTTTAAcaaaa
ttatacaaaatgtCTGTTAGTCTGACTGGTATCACTTAGAAAAACACCAT
TGTAACCGACCAAATCTCATTATACTGTATAGAAGTTTCTGAAATTACAT
TAATCTGAAAAAGTCGAATGTGTCCACCGCGCTgagctcaacttcagtat
tctTCTAACTATTCAAGGTCCAACAtccaattgagaaaaaaagatgTGCT
ATCAGACAGACACCGAAAGAATCTTTCTAAATCCGACCAGATCTGATTAT
ATTCCAGAGTGCCCCGAAATTTTAGCCTCGTTCTGTTGAAAAACTCGTCT
CCAGGCTCCAATGAtgtttttccccatatctgagcctagatatgttTACA
AGTGTAATACTtatgaaaaaaacatgtaatttgaAATAGAGATAAGAGAT
AATAATTTCATTTAATTATGGGTAACTCTAATCGTGACTAAAAATCATTT
GCAGCTTGCTCAATTATAAAGATGATTATTCAAAAAGAAAGTTGATNACA
CCATTGTAACCGACCAAATCTCATTATACTGTATAGAAGTTTCTGAAATT
ACATTAATCTGAAAAAGTCGAATGTGTCCACCGCGCTgagctcaacttca
gtattctTCTAACTATTCAAGGTCCAACATCCAATTGTAGAAAAAAAGAT
GTGCTGTCAGACAGACACCGAAAGAATCTTTCTAAATCCGACCAGATCAT
ATTATATTCCAGAGTGCCCCGAAATTTTAGCCTCGTTCTGTTGAAAAACT
CGTCTCCAGGCTCCAATGAtgtttttccccatatctgagcctagatatgt
tTACAAGTGTAATACTtatgaaaaaaacatgtaatttgaAATAGAGATAA
GAGATAATAATTTCATTTAATTATGGGTAACTCTAATCGTGACTAAAAAT
CATTTGCAGCTTGCTCAATTATAAAGATGATTATTCAAAAAGAAAGTTGA
TCAAtttgttgttttaacgttcaaataacgttatttggacgttatgaatg
ctaaatggacgttgttttgacgttgtgtgccggctcgTCACCAGCCCACT
CAATTCTAGTGAAAATACTTTGATTACAAACAAAATTAATGCAGTCTTCT
CTACACCCTCAAGACAAGATGGCGAGAGAAAGTTTACTATTTTTCCTGTT
GGCTCTCCACTGTTGTGAAGCCTTCTACAATGGTGATGTACCAAGAAGAC
GGAGTGAGGCTTCAAGACTTTTGATGGCTAAAGATGCTTCACAAAAACAT
GCTTCAAGTGATACCTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAAG
ACATGTTTCAAGTGATTCAAGACTTTTGTTTGGTAAAGATGCTCCACAAA
GACATGTTTCAAGTGATACCTCAAGGCTTTTGTTTGGTAAAGATGCTCCA
CAAAGACATGTTTCAAGCGATACCTCACGACTTTTAATAGGTAAAGATGT
TCCACAAAGACCCGCTGGAGGAAGCGATTCTCGTACCTCCTATACGGCTC
ACCTAATGCCCACCTTAGGTAAAGATGAATATGTAAACGCTCTAAAAGAA
AGACTTCTCAATGATtaccgaatgaaattacttcaacaacaacgacaaca
acaacacCAGCAACAAGAGGACGATGACGAGCTATACTTTGATCACAGTA
AGTTTTATTACCGTTATTAGAATCTTTTGTAGGTGACCCTCTTCTTTTAT
TGTCACTctttttcaaagataaaaaatgtattaGAAAGGACGGAATCTAC
TTTGATCTACTTTGGGAAAACGACTGAAAAAGAGAAAGATTTGTGtgaat
ttctgacgtcagaaaagaaaaatgaagacacaacctcgtccccgtgtatt
ccaggctttatttatgttcctaatggacgccagagaatattatctaacgc
tgtcagtaagcatcaaaaagccgaAAATACGTAGGGAACGAGGTTGTTGT
CAACGTAGCGACCATTTTCTTCGAGAACAACTGaagtcacaatgaatttt
cttgACGACGAACAACTCCTTGCTATATGTAAGCCCGTCGTTATGccaaa
agaaccaattgcatcgCGTAAAAACTCAGACCAGAAAAAATTGACTGCAT
AAAAATCTGAAATGCCAAAACTGTCTGCACAAATGGAAATCCGCATTTCG
CAAAAATGTGATGAAATTTCGACTAATTTCTAAATTCCCTTCTTTACATA
GGTTTCAGGAGGGGAAACAACCCATCGGCATCGGCGTTTAGACGTCGATA
TAGTGACCAAACGGGTCAACCATTAAGCGGTAGTCGTGATCAAAAAGTCC
ATCAAGATGAAAACGCCCGAGACACACTCGAAAAGAAACAACAGGCTAGT
TTAGACCAAACGAAAGAAGAATTAAAACGCAGCCTTTTGAAAGATTTCTA
CAAAAAAATGATAACAGAAAAACGAGAAAAACAAGAATTCGCAAAGAAGA
GTGATGCACCAGTGAGCAATGATTTTGATGATGAAATCCTTCGACATTTA
GGTAGGTGATTAATTTGATTTAaccaagttttttgaaaaatgttactTAC
CCTGAAAGGAAGAATTTAATTGGGTGGACGgccgaaaaagaatttttagt
gggaatttaatttggtgttTGCCTCATTAACccttgtcgtatatatcaga
catgggctatgtagggcTATGTATGTTATTTTTGGTCTAAATCGTAGGAa
tcggattgggcttcatggccaagctaaaaaaaatcaaaagggaGTCTTTT
CAGTGAGATTGTAATCTAATaagtcaaaaaatgcaaacttcccttaccta
ccccccccccttagccGCCGCCCACCCCGCctttcctaaatcgggcggcg
ctgaaggcgcctaaaagaaagagaagaCTCTAAGTTATCCAACGGACtgt
aaacgagcttctaactccttctagatccggagatataagcctttaaagtt
tgaactacactcattttgttttataagcatacggtaaatttcggctgaag
ctcactatgctaaagtaaagctcaattttgagcctcgactatgcttaacc
ctatgcttggtaaaaaaattatgaagggTTGGGGGGGGTAAAAATTTTCG
CGCATTTTCCCCTATCTTCAATCTTGagagaaatgaagacattctacaTA
TTGTTTTCGAATTTTTACCATATGATTTCGAATCTTTATAGTGTTGTGTT
CATGTTTCAAAAACAGACTGCTACACTTTCTCTCTTGACTTGgtgctttt
ttatatataaatagTATATAGGGATTAATTTGGATTCTGTATAATACAGT
ACTACttgtttgtaattctcttcttcattcttctgttattttctaaagtt
ttggaaattatgattctaaaaatttctttggctgagcctcaaggtatgct
tagcatatgcttaatttttctggaaatttgagcttcagtatgcttataaa
cgttatgcttataaaacaaaatgagcgtagcaattttctttaaaaaactt
agaaaaaaatgaccgtggcacttaaagggttaagtaatcaataaaccttt
tttttaagtCCTGAAATAACACTAATTCTGAAAATGCCTGGAATTGGTTA
TTCCAGGTATAGTATGTACCCTCTATGTTGAGGATGTTTGACATCCAGGG
CAGTCTGGGAAATAGAAAAtccaagagggtctgtaaaatacgATGGTTAA
TCCAGGGTGGTCATTAAAGGGAGGTCGAAAGTCCAGTGTGGTCAAGAAAG
GGGGGGTCGAAAGTCCAGGGTGTTCAGTAAAAggaggtcgaaaatccagg
gtggtccaaaaaatgaaaagCCAACTTTCTTAAAGAAGACCTCTTCGCAT
AGGGGTTATAATTTCGTTCTGGAATAGCCCTAAAGAATTAATTTGGTGGG
AATATAATTTGACGgatgatgcaaaaaaaattcaacggGAGCTTaattaa
tttggcggatttcaggcGATTCTCTCCCTTCAATGGTATACTACAAAGGA
TTCAAAGAAGGCAGGAATACGAACAACTTTAGTTTGAAAGAAACAACAAT
TAATATAATTACTTTAGAGTTAGGACATTTTTGAAACAGAAAACAATTTC
TATTAACCTTAAACACTCACTTCTAACAGATTGGGACCCCTTctcactga
aaaaattggccaaaataacgtccccagtggaaagttATCCACCAAATTTT
GTCCCCACTATAATTGATTAAATTAACCAagcctcactgcaaaatattat
gctgttttccccatccccactgaatttgcTGACttggaaacaaaagaatt
gaaatccccatccAAAAAGATTAATATGGGAAAATTAATTCCCATGGAGT
TTCAGTacgatatttttatccccactgactgaaaaaatcctaccgggtct
gtgagaagggggtgtccttaaaaacccaaaaaaacggtatttcttttttt
tttcaacagttGAATTCAAACTGAAGAAAGAAGATCCAATGAAACGCATG
AGACGATAAATATGTACAGGATTGATCGGTAACACCCATAACTCCATACC
TCCATCTTGCCTGTTCTCTTCAGGCCTGTACAGAGCTCAAGTTTTCGTGG
ATGAATCTAACATCTGTATTTAAGAATGTGAACAGACAAAGTGGATTTTG
AATATTGACAATGGATGTTATCAACCTTGACCTCAGTGATgtgatataca
cgtttttttataaaatgttcttaacttgctcatGACATTTTGACCAGCGa
agcctttgttcttatatggtttgttcttataaaaaacgtgtacgcaACCT
TTCATTGTAAAGATTTCCatttataatatatattatacttttttaaagat
aactttgTATGGATCTAATAATATTAAATAATAAGTTGTCTGAAACTGTT
TCAGATTATAGCttgatctttttttataagaacaattttataggAACAAT
GATGATCATaaatgccaaaaataagaaACAGTTTTAGGAACAATGCTGAG
ACTAGAATGAATATATGTTGAGAATTTCTTTGAAAACCACGCTGGTTACG
CGCTTTTAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021972-exon-sc0000401-1491911889:228540..228830 | TCONS_00021972-exon-sc0000401-1491911889:228540..228830 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1510915933:228540..228830 | TCONS_00021972-exon-sc0000401-1510915933:228540..228830 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1575043694:228540..228830 | TCONS_00021972-exon-sc0000401-1575043694:228540..228830 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1491911889:229963..230265 | TCONS_00021972-exon-sc0000401-1491911889:229963..230265 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1510915933:229963..230265 | TCONS_00021972-exon-sc0000401-1510915933:229963..230265 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1575043694:229963..230265 | TCONS_00021972-exon-sc0000401-1575043694:229963..230265 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1491911889:237049..237652 | TCONS_00021972-exon-sc0000401-1491911889:237049..237652 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1510915933:237049..237652 | TCONS_00021972-exon-sc0000401-1510915933:237049..237652 | Clytia hemisphaerica | exon |
| TCONS_00021972-exon-sc0000401-1575043694:237049..237652 | TCONS_00021972-exon-sc0000401-1575043694:237049..237652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:228540..237652 + |
Blast
The following BLAST results are available for this feature:
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