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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021970 ID=TCONS_00021970|Name=TCONS_00021970|organism=Clytia hemisphaerica|type=transcript|length=1546bp
TACCTTTTGGGACATAAGCCGATCTCCAGGGTCCAGGGTCTTGTGCTTTG
GGTCCGTCTTCAAGATAACAGGAACCAAGGAGTGATTGTTGACTGCAAAA
CATGACTTTCTTGGGGACAGTTTTCATCGTTTCCTTATCAGTGAAAAAGT
CTTTCAAGTATGTTGATAAATGTTCATACATTTTCTCATTGTTATAGTAA
TAATTGACTGTGTATCGCATCTTGTAGTGTTCGAACGGGTTCAGGAAAGG
TTTGAAAACTTTCTTGTTATATTCTCTAGAGTTTTGGATCATGTCTAAGA
GAAGATGCATAAAAACGTATGcttttcttcttgatttttcctttttggCT
TGGTCCATTGTTCTCTTCGATGGTTTCTTGTTATTGCTTTTGGATGGTGC
AGGATTGTTTTTGGATGGTGCGGGATTGCTTTTGGATGGTGCAGGATTGC
TTTTGGATGGTGCAGGATTGCTTTTGGATGGTGCAGGATTGCCATTGGAT
GCTCCGGGATTGTTTGGAATTGCATTATCGTCGCTTTCTGAAGGCGTTTT
ACCACTAGAGACGTTATCAAAGTATTTTTCTCCTACAATCTTATGGATGA
CTTCCAGACTTTTCAAGTATGTTTGGTAATGGTAGGAGCTGATCTTAGAG
TACAATTCATATAACTTCAAACAATTGGTAGCGAATGtatctttttcttc
aatttcatcTTGCGTGGGGATTGGCTCCCTTTCTTCCACGTGTAATATCT
TACGTTCCGATTTCACCTTTCTGGCTTGGATATCAAAATCACAAACTTTA
GAAATATGATGTTCAATCTTGCCAAGTAGGTGGGTGCTGGATGTTAATAC
TTTATAAATTTGCGGTGTGACTTCATCAAACAGTTGTTGCTTAACTTCCT
CCTTCCCACCCATATCCTCAATATTGAATTGCTTCTTATCCTCACCAACC
AACGGTTTCACTTCATCGAATTTCTCAATCATATCTAAATGTTTGAGATA
AACTTCAGTCAATCTCTTATAACCATTCCAATCAGCACTTAACTGAGTCT
CCGAGAATTTCCTTAACGCTTTTTCAATAGCCTTCTGTAGCTTGGATGCT
TCACTCTCAGGAGGGCCATTCTTCTTTTTATCTATGATCGTCAAGATGGT
TTTAATGATGTCTAAAGACATAGCAACGAGGTACCCAACAGGTCCACCCA
CCATAGATGCGATCCCAGAGACGATTGTGATACTTGAAATCGCGATCCCC
ATTTTATCTTTCTTCTCAATCTTATCGTAAAGTGATTCTGCAGCTCCTAA
GGATGTAGCTAATCCAcctaaaaaagaaagagagTAAGTATGCCTTGATA
ACATTAtacttttccaaaaatttcaagaaagtaagccaaaacaagctaga
tgctgaaagttggatagcaatgcgaggagaaaaaaatcagtcaaaaaata
tagcgtttagcgaaaatgcataacgcaataaattcatcattgattgttga
tggggggagagggaagggttgtaggggaaaaataaatagaaagttc Run BLAST on NCBI transcript from alignment at sc0000401:207686..209315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021970 ID=TCONS_00021970|Name=TCONS_00021970|organism=Clytia hemisphaerica|type=transcript|length=1630bp|location=Sequence derived from alignment at sc0000401:207686..209315+ (Clytia hemisphaerica)
TACCTTTTGGGACATAAGCCGATCTCCAGGGTCCAGGGTCTTGTGCTTTG
GGTCCGTCTTCAAGATAACAGGAACCAAGGAGTGATTGTTGACTGCAAAA
CATGACTTTCTTGGGGACAGTTTTCATCGTTTCCTTATCAGTGAAAAAGT
CTTTCAAGTATGTTGATAAATGTTCATACATTTTCTCATTGTTATAGTAA
TAATTGACTGTGTATCGCATCTTGTAGTGTTCGAACGGGTTCAGGAAAGG
TTTGAAAACTTTCTTGTTATATTCTCTAGAGTTTTGGATCATGTCTAAGA
GAAGATGCATAAAAACGTATGcttttcttcttgatttttcctttttggCT
TGGTCCATTGTTCTCTTCGATGGTTTCTTGTTATTGCTTTTGGATGGTGC
AGGATTGTTTTTGGATGGTGCTGGATTGCTTTTGGATGGTGCGGGATTGC
TTTTGGATGGTGCGGAATTGGTTTTGGATGGTGCGGGATTGCTTTTGGAA
GGTGCGGGATTGCTTTTGGATGGTGCAGGATTGCTTTTGGATGGTGCAGG
ATTGCTTTTGGATGGTGCAGGATTGCCATTGGATGCTCCGGGATTGTTTG
GAATTGCATTATCGTCGCTTTCTGAAGGCGTTTTACCACTAGAGACGTTA
TCAAAGTATTTTTCTCCTACAATCTTATGGATGACTTCCAGACTTTTCAA
GTATGTTTGGTAATGGTAGGAGCTGATCTTAGAGTACAATTCATATAACT
TCAAACAATTGGTAGCGAATGtatctttttcttcaatttcatcTTGCGTG
GGGATTGGCTCCCTTTCTTCCACGTGTAATATCTTACGTTCCGATTTCAC
CTTTCTGGCTTGGATATCAAAATCACAAACTTTAGAAATATGATGTTCAA
TCTTGCCAAGTAGGTGGGTGCTGGATGTTAATACTTTATAAATTTGCGGT
GTGACTTCATCAAACAGTTGTTGCTTAACTTCCTCCTTCCCACCCATATC
CTCAATATTGAATTGCTTCTTATCCTCACCAACCAACGGTTTCACTTCAT
CGAATTTCTCAATCATATCTAAATGTTTGAGATAAACTTCAGTCAATCTC
TTATAACCATTCCAATCAGCACTTAACTGAGTCTCCGAGAATTTCCTTAA
CGCTTTTTCAATAGCCTTCTGTAGCTTGGATGCTTCACTCTCAGGAGGGC
CATTCTTCTTTTTATCTATGATCGTCAAGATGGTTTTAATGATGTCTAAA
GACATAGCAACGAGGTACCCAACAGGTCCACCCACCATAGATGCGATCCC
AGAGACGATTGTGATACTTGAAATCGCGATCCCCATTTTATCTTTCTTCT
CAATCTTATCGTAAAGTGATTCTGCAGCTCCTAAGGATGTAGCTAATCCA
cctaaaaaagaaagagagTAAGTATGCCTTGATAACATTAtacttttcca
aaaatttcaagaaagtaagccaaaacaagctagatgctgaaagttggata
gcaatgcgaggagaaaaaaatcagtcaaaaaatatagcgtttagcgaaaa
tgcataacgcaataaattcatcattgattgttgatggggggagagggaag
ggttgtaggggaaaaataaatagaaagttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021970-exon-sc0000401-1491911889:207686..208102 | TCONS_00021970-exon-sc0000401-1491911889:207686..208102 | Clytia hemisphaerica | exon |
| TCONS_00021970-exon-sc0000401-1510915933:207686..208102 | TCONS_00021970-exon-sc0000401-1510915933:207686..208102 | Clytia hemisphaerica | exon |
| TCONS_00021970-exon-sc0000401-1575043694:207686..208102 | TCONS_00021970-exon-sc0000401-1575043694:207686..208102 | Clytia hemisphaerica | exon |
| TCONS_00021970-exon-sc0000401-1491911889:208187..209315 | TCONS_00021970-exon-sc0000401-1491911889:208187..209315 | Clytia hemisphaerica | exon |
| TCONS_00021970-exon-sc0000401-1510915933:208187..209315 | TCONS_00021970-exon-sc0000401-1510915933:208187..209315 | Clytia hemisphaerica | exon |
| TCONS_00021970-exon-sc0000401-1575043694:208187..209315 | TCONS_00021970-exon-sc0000401-1575043694:208187..209315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:207686..209315 + |
Blast
The following BLAST results are available for this feature:
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