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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021968 ID=TCONS_00021968|Name=TCONS_00021968|organism=Clytia hemisphaerica|type=transcript|length=1528bp
CTTTACCTTTTGGGACATAAGCCGATCTCCAGGGTCCAGGGTCTTGTGCT
TTGGGTCCGTCTTCAAGATAACAGGAACCAAGGAGTGATTGTTGACTGCA
AAACATGACTTTCTTGGGGACAGTTTTCATCGTTTCCTTATCAGTGAAAA
AGTCTTTCAAGTATGTTGATAAATGTTCATACATTTTCTCATTGTTATAG
TAATAATTGACTGTGTATCGCATCTTGTAGTGTTCGAACGGGTTCAGGAA
AGGTTTGAAAACTTTCTTGTTATATTCTCTAGAGTTTTGGATCATGTCTA
AGAGAAGATGCATAAAAACGTATGcttttcttcttgatttttcctttttg
gCTTGGTCCATTGTTCTCTTCGATGGTTTCTTGTTATTGCTTTTGGATGG
TGCGGGATTGCTTTTGGATGGTGCAGGATTGCTTTTGGATGGTGCAGGAT
TGCTTTTGGATGGTGCAGGATTGCCATTGGATGCTCCGGGATTGTTTGGA
ATTGCATTATCGTCGCTTTCTGAAGGCGTTTTACCACTAGAGACGTTATC
AAAGTATTTTTCTCCTACAATCTTATGGATGACTTCCAGACTTTTCAAGT
ATGTTTGGTAATGGTAGGAGCTGATCTTAGAGTACAATTCATATAACTTC
AAACAATTGGTAGCGAATGtatctttttcttcaatttcatcTTGCGTGGG
GATTGGCTCCCTTTCTTCCACGTGTAATATCTTACGTTCCGATTTCACCT
TTCTGGCTTGGATATCAAAATCACAAACTTTAGAAATATGATGTTCAATC
TTGCCAAGTAGGTGGGTGCTGGATGTTAATACTTTATAAATTTGCGGTGT
GACTTCATCAAACAGTTGTTGCTTAACTTCCTCCTTCCCACCCATATCCT
CAATATTGAATTGCTTCTTATCCTCACCAACCAACGGTTTCACTTCATCG
AATTTCTCAATCATATCTAAATGTTTGAGATAAACTTCAGTCAATCTCTT
ATAACCATTCCAATCAGCACTTAACTGAGTCTCCGAGAATTTCCTTAACG
CTTTTTCAATAGCCTTCTGTAGCTTGGATGCTTCACTCTCAGGAGGGCCA
TTCTTCTTTTTATCTATGATCGTCAAGATGGTTTTAATGATGTCTAAAGA
CATAGCAACGAGGTACCCAACAGGTCCACCCACCATAGATGCGATCCCAG
AGACGATTGTGATACTTGAAATCGCGATCCCCATTTTATCTTTCTTCTCA
ATCTTATCGTAAAGTGATTCTGCAGCTCCTAAGGATGTAGCTAATCCAcc
taaaaaagaaagagagTAAGTATGCCTTGATAACATTAtacttttccaaa
aatttcaagaaagtaagccaaaacaagctagatgctgaaagttggatagc
aatgcgaggagaaaaaaatcagtcaaaaaatatagcgtttagcgaaaatg
cataacgcaataaattcatcattgattgttgatggggggagagggaaggg
ttgtaggggaaaaataaatagaaagttc Run BLAST on NCBI transcript from alignment at sc0000401:207683..209315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021968 ID=TCONS_00021968|Name=TCONS_00021968|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0000401:207683..209315+ (Clytia hemisphaerica)
CTTTACCTTTTGGGACATAAGCCGATCTCCAGGGTCCAGGGTCTTGTGCT
TTGGGTCCGTCTTCAAGATAACAGGAACCAAGGAGTGATTGTTGACTGCA
AAACATGACTTTCTTGGGGACAGTTTTCATCGTTTCCTTATCAGTGAAAA
AGTCTTTCAAGTATGTTGATAAATGTTCATACATTTTCTCATTGTTATAG
TAATAATTGACTGTGTATCGCATCTTGTAGTGTTCGAACGGGTTCAGGAA
AGGTTTGAAAACTTTCTTGTTATATTCTCTAGAGTTTTGGATCATGTCTA
AGAGAAGATGCATAAAAACGTATGcttttcttcttgatttttcctttttg
gCTTGGTCCATTGTTCTCTTCGATGGTTTCTTGTTATTGCTTTTGGATGG
TGCAGGATTGTTTTTGGATGGTGCTGGATTGCTTTTGGATGGTGCGGGAT
TGCTTTTGGATGGTGCGGAATTGGTTTTGGATGGTGCGGGATTGCTTTTG
GAAGGTGCGGGATTGCTTTTGGATGGTGCAGGATTGCTTTTGGATGGTGC
AGGATTGCTTTTGGATGGTGCAGGATTGCCATTGGATGCTCCGGGATTGT
TTGGAATTGCATTATCGTCGCTTTCTGAAGGCGTTTTACCACTAGAGACG
TTATCAAAGTATTTTTCTCCTACAATCTTATGGATGACTTCCAGACTTTT
CAAGTATGTTTGGTAATGGTAGGAGCTGATCTTAGAGTACAATTCATATA
ACTTCAAACAATTGGTAGCGAATGtatctttttcttcaatttcatcTTGC
GTGGGGATTGGCTCCCTTTCTTCCACGTGTAATATCTTACGTTCCGATTT
CACCTTTCTGGCTTGGATATCAAAATCACAAACTTTAGAAATATGATGTT
CAATCTTGCCAAGTAGGTGGGTGCTGGATGTTAATACTTTATAAATTTGC
GGTGTGACTTCATCAAACAGTTGTTGCTTAACTTCCTCCTTCCCACCCAT
ATCCTCAATATTGAATTGCTTCTTATCCTCACCAACCAACGGTTTCACTT
CATCGAATTTCTCAATCATATCTAAATGTTTGAGATAAACTTCAGTCAAT
CTCTTATAACCATTCCAATCAGCACTTAACTGAGTCTCCGAGAATTTCCT
TAACGCTTTTTCAATAGCCTTCTGTAGCTTGGATGCTTCACTCTCAGGAG
GGCCATTCTTCTTTTTATCTATGATCGTCAAGATGGTTTTAATGATGTCT
AAAGACATAGCAACGAGGTACCCAACAGGTCCACCCACCATAGATGCGAT
CCCAGAGACGATTGTGATACTTGAAATCGCGATCCCCATTTTATCTTTCT
TCTCAATCTTATCGTAAAGTGATTCTGCAGCTCCTAAGGATGTAGCTAAT
CCAcctaaaaaagaaagagagTAAGTATGCCTTGATAACATTAtactttt
ccaaaaatttcaagaaagtaagccaaaacaagctagatgctgaaagttgg
atagcaatgcgaggagaaaaaaatcagtcaaaaaatatagcgtttagcga
aaatgcataacgcaataaattcatcattgattgttgatggggggagaggg
aagggttgtaggggaaaaataaatagaaagttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021968-exon-sc0000401-1491911889:207683..208081 | TCONS_00021968-exon-sc0000401-1491911889:207683..208081 | Clytia hemisphaerica | exon |
| TCONS_00021968-exon-sc0000401-1510915933:207683..208081 | TCONS_00021968-exon-sc0000401-1510915933:207683..208081 | Clytia hemisphaerica | exon |
| TCONS_00021968-exon-sc0000401-1575043694:207683..208081 | TCONS_00021968-exon-sc0000401-1575043694:207683..208081 | Clytia hemisphaerica | exon |
| TCONS_00021968-exon-sc0000401-1491911889:208187..209315 | TCONS_00021968-exon-sc0000401-1491911889:208187..209315 | Clytia hemisphaerica | exon |
| TCONS_00021968-exon-sc0000401-1510915933:208187..209315 | TCONS_00021968-exon-sc0000401-1510915933:208187..209315 | Clytia hemisphaerica | exon |
| TCONS_00021968-exon-sc0000401-1575043694:208187..209315 | TCONS_00021968-exon-sc0000401-1575043694:208187..209315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:207683..209315 + |
Blast
The following BLAST results are available for this feature:
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