TCONS_00021960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021960
Unique NameTCONS_00021960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021960 ID=TCONS_00021960|Name=TCONS_00021960|organism=Clytia hemisphaerica|type=transcript|length=240bp
CTCAGGGTTCAGGTTCGTATGAAAAGTTACCAAATTAACAGGGGACGACA
TTAAATTTTGACCAGGCACTTGTAGGAATGAAGGATTGAACAGTAATCGt
tgatttttttcacattttagaTCAAAGGATTGGCGGATTGTGAAGATCAA
TCGGACTTGTTTCCAAGAATGGCTGCTATTTATGAGAAGTGGAACAAGCT
CACGAAAAGCAATGAATTctccaaatattttgaaagctaT
Run BLAST on NCBI

transcript from alignment at sc0000400:217933..218172

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021960 ID=TCONS_00021960|Name=TCONS_00021960|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at sc0000400:217933..218172 (Clytia hemisphaerica)
AtagctttcaaaatatttggagAATTCATTGCTTTTCGTGAGCTTGTTCC
ACTTCTCATAAATAGCAGCCATTCTTGGAAACAAGTCCGATTGATCTTCA
CAATCCGCCAATCCTTTGAtctaaaatgtgaaaaaaatcaaCGATTACTG
TTCAATCCTTCATTCCTACAAGTGCCTGGTCAAAATTTAATGTCGTCCCC
TGTTAATTTGGTAACTTTTCATACGAACCTGAACCCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012326XLOC_012326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021960-exon-sc0000400-1491911889:217933..218172TCONS_00021960-exon-sc0000400-1491911889:217933..218172Clytia hemisphaericaexon
TCONS_00021960-exon-sc0000400-1510915933:217933..218172TCONS_00021960-exon-sc0000400-1510915933:217933..218172Clytia hemisphaericaexon
TCONS_00021960-exon-sc0000400-1575043694:217933..218172TCONS_00021960-exon-sc0000400-1575043694:217933..218172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:217933..218172 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top