TCONS_00021958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021958
Unique NameTCONS_00021958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021958 ID=TCONS_00021958|Name=TCONS_00021958|organism=Clytia hemisphaerica|type=transcript|length=524bp
ATACTCAAGGATGATAGAATTGTTCTTCCAGAATCACTACACAAACTAGC
TATTGAACTAGCACACAGGGGATCTCACCCAGGACAAAGTGGAATTGAAA
GGAGACTTAGGTTTTCTTCCATGGAATGTACGATAAGGTGAAAAGTTTTG
TCAGTTCTTGCAGTGATTGCGCATTGTTTGTTGATAAAAAGACAAAGGAA
CCTATAACCAGTCACAGGGTACCTGAAAACTCTTGGGACACAGTGGCCGT
AGACCTCTTTGGTCCCATGCCATCATCCAAGCACATTGTTGTTGTTCAAG
ATCTGGGATCAAGATACCCAGCAGCAAAGCTCGTAGCCTCAACTAAAGCT
GATAAAGTTATCCCTGCACTAGCGGAGATCTATGATGAATATGGATatcc
tgaaaatcaaatatctgacaATGGTCCTCCTTTCAACAGCAGAAAAATGG
AGGAGTTTACTAAAACCCATGGTGTTGCCACAAGGTTCTCATCCCCTCAT
TTTCCTAGTCAAAACCCAGCCGAG
Run BLAST on NCBI

protein sequence of TCONS_00021958-protein

>TCONS_00021958-protein ID=TCONS_00021958-protein|Name=TCONS_00021958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MYDKVKSFVSSCSDCALFVDKKTKEPITSHRVPENSWDTVAVDLFGPMPS
SKHIVVVQDLGSRYPAAKLVASTKADKVIPALAEIYDEYGYPENQISDNG
PPFNSRKMEEFTKTHGVATRFSSPHFPSQNPAE
Run BLAST on NCBI

transcript from alignment at sc0000400:212569..213092

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021958 ID=TCONS_00021958|Name=TCONS_00021958|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at sc0000400:212569..213092 (Clytia hemisphaerica)
CTCGGCTGGGTTTTGACTAGGAAAATGAGGGGATGAGAACCTTGTGGCAA
CACCATGGGTTTTAGTAAACTCCTCCATTTTTCTGCTGTTGAAAGGAGGA
CCATtgtcagatatttgattttcaggatATCCATATTCATCATAGATCTC
CGCTAGTGCAGGGATAACTTTATCAGCTTTAGTTGAGGCTACGAGCTTTG
CTGCTGGGTATCTTGATCCCAGATCTTGAACAACAACAATGTGCTTGGAT
GATGGCATGGGACCAAAGAGGTCTACGGCCACTGTGTCCCAAGAGTTTTC
AGGTACCCTGTGACTGGTTATAGGTTCCTTTGTCTTTTTATCAACAAACA
ATGCGCAATCACTGCAAGAACTGACAAAACTTTTCACCTTATCGTACATT
CCATGGAAGAAAACCTAAGTCTCCTTTCAATTCCACTTTGTCCTGGGTGA
GATCCCCTGTGTGCTAGTTCAATAGCTAGTTTGTGTAGTGATTCTGGAAG
AACAATTCTATCATCCTTGAGTAT

Coding sequence (CDS) from alignment at sc0000400:212569..213092

>TCONS_00021958 ID=TCONS_00021958|Name=TCONS_00021958|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000400:212569..213092 (Clytia hemisphaerica)
CTCGGCTGGGTTTTGACTAGGAAAATGAGGGGATGAGAACCTTGTGGCAA
CACCATGGGTTTTAGTAAACTCCTCCATTTTTCTGCTGTTGAAAGGAGGA
CCATtgtcagatatttgattttcaggatATCCATATTCATCATAGATCTC
CGCTAGTGCAGGGATAACTTTATCAGCTTTAGTTGAGGCTACGAGCTTTG
CTGCTGGGTATCTTGATCCCAGATCTTGAACAACAACAATGTGCTTGGAT
GATGGCATGGGACCAAAGAGGTCTACGGCCACTGTGTCCCAAGAGTTTTC
AGGTACCCTGTGACTGGTTATAGGTTCCTTTGTCTTTTTATCAACAAACA
ATGCGCAATCACTGCAAGAACTGACAAAACTTTTCACCTTATCGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012324XLOC_012324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021958-exon-sc0000400-1491911889:212569..213092TCONS_00021958-exon-sc0000400-1491911889:212569..213092Clytia hemisphaericaexon
TCONS_00021958-exon-sc0000400-1510915933:212569..213092TCONS_00021958-exon-sc0000400-1510915933:212569..213092Clytia hemisphaericaexon
TCONS_00021958-exon-sc0000400-1575043694:212569..213092TCONS_00021958-exon-sc0000400-1575043694:212569..213092Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021958-proteinTCONS_00021958-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:212569..213092 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.952539	1.49601	1.3075	1.54656	1.00851	0.84559	0.482399	0.383767	0.420845	0.774579	0.42639	0	0.21909	0.364173	0.428261	0.48213	0.359177	0.493175	0	0	0.234531	0.0570782	1.29718	0.777481	0.614843	0.582752	0.146595	0.463204
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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