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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021949 ID=TCONS_00021949|Name=TCONS_00021949|organism=Clytia hemisphaerica|type=transcript|length=926bp
CTGGCTGATTTGAAGGagttctttgaaaatttaaccAACCGGGCAACGAT
CCACTCACAATATAGCTAAATTGATGAAGGAAGGTTTACTAAGCAGGGTG
CGGTCCAGTCACATTTCTTTAGAAGATAagcgttttttttaagaacgtTC
AACATTTTTAACTTTTCGGATGTTTTAAGATTCCGCAAAGCTTTCAAATA
CTCtttaacttttcttaatatttttttgccatcaaagccttatgttttta
tatagtttgttctgaaAAACGAGCGTATGTATTATTAGTCAagaaaattg
acattttcacGGAATTCTGCAAATTGAATTGATTTCTTTTCTATAATCTT
TGCCACTGCTTCAAGGGTGAATCCTGGCTCTTGTTTTAAAATTGGAAAAC
TTGAAACTTAATAAACTAATGaggctaaaataaaaaagaaacttatACTA
CTTTGAAGCTGTAAAAAACTAAAGTTTTTTCCGCATACCCTAtccatttt
atttgaaatttgcGCTGCCCATTCTTATCATTCCGGTGGGTATTAATGTA
TTCTACCAAAAGGCGTTGTTGCTTTGCTATCTCCAAGACAACTCTTTTTG
TGACAGTCAGGGTACTGGAATTAGGCATTTCTTCATCCAGAACAACTTTT
TCATACATGGGGTCTAACGCGTAACCTCTGGAAcgttttctctttgtttt
ggacGATTTGGAAGCGGTCTCTGACGTTTTTAAAGCAGCTTCCGAtggtt
ttgacttttttctttttcgtgttTCTGTTTTCGTCTCAACAGGATCAACT
AATGTTGAAGTTTCAGCAGGATCAACTGATGTTGAAGTTTCAACAAGATC
TGTTGATGCAGGAGCTTCTGGAATATTTTCTGATATGGAATCTATCATAG
ACTCCATATTAGAAAATGTTTCAGAA Run BLAST on NCBI protein sequence of TCONS_00021949-protein >TCONS_00021949-protein ID=TCONS_00021949-protein|Name=TCONS_00021949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
SETFSNMESMIDSISENIPEAPASTDLVETSTSVDPAETSTLVDPVETKT
ETRKRKKSKPSEAALKTSETASKSSKTKRKRSRGYALDPMYEKVVLDEEM
PNSSTLTVTKRVVLEIAKQQRLLVEYINTHRNDKNGQRKFQIKWIGYAEK
TLVFYSFKVV Run BLAST on NCBI transcript from alignment at sc0000400:8773..9698 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021949 ID=TCONS_00021949|Name=TCONS_00021949|organism=Clytia hemisphaerica|type=transcript|length=926bp|location=Sequence derived from alignment at sc0000400:8773..9698 (Clytia hemisphaerica)
TTCTGAAACATTTTCTAATATGGAGTCTATGATAGATTCCATATCAGAAA
ATATTCCAGAAGCTCCTGCATCAACAGATCTTGTTGAAACTTCAACATCA
GTTGATCCTGCTGAAACTTCAACATTAGTTGATCCTGTTGAGACGAAAAC
AGAaacacgaaaaagaaaaaagtcaaaaccaTCGGAAGCTGCTTTAAAAA
CGTCAGAGACCGCTTCCAAATCgtccaaaacaaagagaaaacgTTCCAGA
GGTTACGCGTTAGACCCCATGTATGAAAAAGTTGTTCTGGATGAAGAAAT
GCCTAATTCCAGTACCCTGACTGTCACAAAAAGAGTTGTCTTGGAGATAG
CAAAGCAACAACGCCTTTTGGTAGAATACATTAATACCCACCGGAATGAT
AAGAATGGGCAGCgcaaatttcaaataaaatggaTAGGGTATGCGGAAAA
AACTTTAGTTTTTTACAGCTTCAAAGTAGTataagtttcttttttatttt
agcctCATTAGTTTATTAAGTTTCAAGTTTTCCAATTTTAAAACAAGAGC
CAGGATTCACCCTTGAAGCAGTGGCAAAGATTATAGAAAAGAAATCAATT
CAATTTGCAGAATTCCgtgaaaatgtcaattttctTGACTAATAATACAT
ACGCTCGTTTttcagaacaaactatataaaaacataaggctttgatggca
aaaaaatattaagaaaagttaaaGAGTATTTGAAAGCTTTGCGGAATCTT
AAAACATCCGAAAAGTTAAAAATGTTGAacgttcttaaaaaaaacgctTA
TCTTCTAAAGAAATGTGACTGGACCGCACCCTGCTTAGTAAACCTTCCTT
CATCAATTTAGCTATATTGTGAGTGGATCGTTGCCCGGTTggttaaattt
tcaaagaactCCTTCAAATCAGCCAG Coding sequence (CDS) from alignment at sc0000400:8773..9698 >TCONS_00021949 ID=TCONS_00021949|Name=TCONS_00021949|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000400:8773..9698 (Clytia hemisphaerica)
TCTGAAACATTTTCTAATATGGAGTCTATGATAGATTCCATATCAGAAAA
TATTCCAGAAGCTCCTGCATCAACAGATCTTGTTGAAACTTCAACATCAG
TTGATCCTGCTGAAACTTCAACATTAGTTGATCCTGTTGAGACGAAAACA
GAaacacgaaaaagaaaaaagtcaaaaccaTCGGAAGCTGCTTTAAAAAC
GTCAGAGACCGCTTCCAAATCgtccaaaacaaagagaaaacgTTCCAGAG
GTTACGCGTTAGACCCCATGTATGAAAAAGTTGTTCTGGATGAAGAAATG
CCTAATTCCAGTACCCTGACTGTCACAAAAAGAGTTGTCTTGGAGATAGC
AAAGCAACAACGCCTTTTGGTAGAATACATTAATACCCACCGGAATGATA
AGAATGGGCAGCgcaaatttcaaataaaatggaTAGGGTATGCGGAAAAA
ACTTTAGTTTTTTACAGCTTCAAAGTAGTataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021949-exon-sc0000400-1491911889:8773..9698 | TCONS_00021949-exon-sc0000400-1491911889:8773..9698 | Clytia hemisphaerica | exon |
| TCONS_00021949-exon-sc0000400-1510915933:8773..9698 | TCONS_00021949-exon-sc0000400-1510915933:8773..9698 | Clytia hemisphaerica | exon |
| TCONS_00021949-exon-sc0000400-1575043694:8773..9698 | TCONS_00021949-exon-sc0000400-1575043694:8773..9698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:8773..9698 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016197 | Chromodomain-like |
Blast
The following BLAST results are available for this feature:
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