TCONS_00021943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021943
Unique NameTCONS_00021943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021943 ID=TCONS_00021943|Name=TCONS_00021943|organism=Clytia hemisphaerica|type=transcript|length=1455bp
GTATGCATCTGTCTGTATACGTATGTATTCGTATTCTGTAGTATCCTAAC
CTGTATTTTTCCCAAAATCCAGTATCCTCGGCATAGGATATTAATATGCG
TTACTCAAGGATACGCAAGGATATTTCCCAATATCCTTGCGTATCCGAAG
CTTTAAAGTACACGGATATTCGACCTTTTCACGCTGTGAAAAGTATATAG
TTTCGAATAATCAACGAATGCAAACATGACCTTTGACcagagaatttttt
cataattacTTGCAATACATCTAATTCTCGAATTAGCTTTAAAACCCAGA
ACTCTTAAGAATCCAAAGCCTTCTAGGTTAACAGTTTCTCACCTTTTTGC
CAAAGGTTGACCGCATCACTGGCGAAAACGAGAAATTTGCAGAAAACAAC
AAAGTCTTGCAAGAACAAAACACAGTCTTCAGTGAAAACAATGCTAAACT
GAGCACCAGCTTGAAGGAGTTGGAGGAGCAAGCCAGCCgcttcaaagaaa
tttatcaaaaattgttgaaagAAAATGAGAAATTGGCAAGAATCAGAGAC
GGTCTACAAGAACAACTCGATGGTTTCTCGAAATTACAAGAGATGATTTT
TAAACAATTGAATGAAAAGATGCGAGCTATGGATCGTTCATTGTTGGAAA
AAGTTGCTGCTGATATTGAAATGCTGGATCAAGATCAAGGTCTCTCACCA
GAAGAATGGGGCAAATTCATGAAACGTGTGCCAACACATTTGAAAGAGAA
ATTCGAAggtatcaaaaatgatttttcaaaattcgacGAAAATAAAGACA
ATGTGATTGATTCAGATGAATTCGGCAAAATGTTGGATGTGGTCATGAAG
GAGACAGAACCGGTCTCATCTGGTGATGAACAACGATAAATATACAACTT
GAACCATCATAGTCCGTTTACCAAACTCCTGCCTGGAAGCTTATTGTCCG
TTCTATTTCCGGGGAAAAGGGGTGTATTTAGGCAAATATTAGGTGCTGAC
GACTGACGTTATTTTTCGAAAACCGTGTCTGTAAAAGGTCACTTCTAAGG
GTCCAGACTACACATGCCCGACATTCTCAAgttgaaacaataaatttcta
GACCAGagtttttatacggactatgttTGAACTTCATGTTTTTGTTGTGA
ATACATGTGAACTTAATCAATCTTCATCTTTGTGGAAACATATGTATAAA
ATAGTATTTTTATCTATCTATTGTGCTTTTTGTACACGGTACATAATGAC
GATAGTAAAGTCATATTTGTCTATTACAATGTAtcgattatttttcttta
attaaaaaaatacttttgtttaaatctttaaaaataattatcttaggaat
ttcttttgaaataatattatgtaaaaattttgaattgaaaatagATAAAT
TCACCATTCGAAATTCGTGGTTGTTAATACAATAATACACGGCATCACGA
AAAAc
Run BLAST on NCBI

transcript from alignment at sc0000400:202044..204481-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021943 ID=TCONS_00021943|Name=TCONS_00021943|organism=Clytia hemisphaerica|type=transcript|length=2438bp|location=Sequence derived from alignment at sc0000400:202044..204481- (Clytia hemisphaerica)
GTATGCATCTGTCTGTATACGTATGTATTCGTATTCTGTAGTATCCTAAC
CTGTATTTTTCCCAAAATCCAGTATCCTCGGCATAGGATATTAATATGCG
TTACTCAAGGATACGCAAGGATATTTCCCAATATCCTTGCGTATCCGAAG
CTTTAAAGTACACGGATATTCGACCTTTTCACGCTGTGAAAAGTATATAG
TTTCGAATAATCAACGAATGCAAACATGACCTTTGACCAGAGAATTTTTT
CATAATTACTTGCAATACATCTAATTCTCGAATTAGCTTTAAAACCCAGA
ACTCTTAAGAATCCAAAGCCTTCTAGGTTAACAGTTTCTCACCTTTTTGC
CAAAGGTTGACCGCATCACTGGCGAAAACGAGAAATTTGCAGAAAACAAC
AAAGTCTTGCAAGAACAAAACACAGTCTTCAGTGAAAACAATGCTAAACT
GAGCACCAGCTTGAAGGAGTTGGAGGAGCAAGCCAGCCGCTTCAAAGAAA
TTTATCAAAAATTGTTGAAAGAAAATGAGAAATTGGCAAGAATCAGAGAC
GGTCTACAAGAACAACTCGATGTAAGTAATCTAATATAGAAGGCGATCAA
ACTTTTCTATAAAAGATGTACATACATTTTGTGGATGTCAATTCTTTTAA
AGCTAACTCATTGTGAAAAACGGGATTCCCCTGCATATTCCCACCTTTTT
GGCATCTTTAAAAATCTGTTGTGTTTTTTGAATTACTGGTAACGCATTCT
TTTTTTCCTTTCCAGGGTTTCTCGAAATTACAAGAGATGATTTTTAAACA
ATTGAATGAAAAGATGCGAGCTATGGATCGTTCATTGTTGGAAAAAGTTG
CTGCTGATATTGAAATGCTGGATCAAGATCAAGGTAAGAAAGAAAAGCAC
AAGTGTAGAAGATTTTGAAATATTTTGATTATCCAAGCACATTATGATTG
ATGAAATTCAAATAAGAATTTGATTGCTATTTAATTAAATTTTTATTTGA
ACTTCATCAATCAAAAGTTATAGTTTTTGTCTCCACTGCAGGTTATGTTA
AGCGGGTACTTAGTCAATAGCTTTTTCATACGTGCTGTACAGCGTAAATA
GCCAGAGGGTCATATGGCTTTTAGCCCGGTTATTAGGTAATAAAAGTTGG
TCGATTAGTAAAATACAGTAAACTGACTCACTAATTAAAATCTCTATATT
GTTCGACTTTCACTGTAAAACACCTTTTTTACCGTAGCCGCTTATTGCTG
CGCGGGCATTTTTTCCCGCTTTATCCTACTAAAACCGTCCCAGTCCTTTT
TTCCCGCCTATAGACAATAGGAAAACGTGTCAAGAAAGGACTGGGACGGT
TTTAGTAGGATAAAGCGGATAAAAAATGCCCGCGCGGCAATTGCCGCCTA
CGGTCGAAAAGGTGTATTCCAACTAAAATACTGGTCCCCTCAGCTGGAAA
ATGGCTCAAATTACTCTCTGTAATTCGAATAGAATTTTGGTCCCATGAAG
ATCGAATTGGAAAGAAATCAACTGCATTGAGCAATAGAAATAAACGAAAA
TCGATCTGTTTAGCTCTTATTTCCGGACACCATATCAATAACAATACAAT
TGTACTTAAATGTACTATGAAATAATTTCAAATCTTATGAAAAGTTAATT
TCAAAATCATTTTCATTCACAGGTCTCTCACCAGAAGAATGGGGCAAATT
CATGAAACGTGTGCCAACACATTTGAAAGAGAAATTCGAAGGTATCAAAA
ATGATTTTTCAAAATTCGACGAAAATAAAGACAATGTGATTGATTCAGAT
GAATTCGGCAAAATGTTGGATGTGGTCATGAAGGAGACAGAACCGGTCTC
ATCTGGTGATGAACAACGATAAATATACAACTTGAACCATCATAGTCCGT
TTACCAAACTCCTGCCTGGAAGCTTATTGTCCGTTCTATTTCCGGGGAAA
AGGGGTGTATTTAGGCAAATATTAGGTGCTGACGACTGACGTTATTTTTC
GAAAACCGTGTCTGTAAAAGGTCACTTCTAAGGGTCCAGACTACACATGC
CCGACATTCTCAAGTTGAAACAATAAATTTCTAGACCAGAGTTTTTATAC
GGACTATGTTTGAACTTCATGTTTTTGTTGTGAATACATGTGAACTTAAT
CAATCTTCATCTTTGTGGAAACATATGTATAAAATAGTATTTTTATCTAT
CTATTGTGCTTTTTGTACACGGTACATAATGACGATAGTAAAGTCATATT
TGTCTATTACAATGTATCGATTATTTTTCTTTAATTAAAAAAATACTTTT
GTTTAAATCTTTAAAAATAATTATCTTAGGAATTTCTTTTGAAATAATAT
TATGTAAAAATTTTGAATTGAAAATAGATAAATTCACCATTCGAAATTCG
TGGTTGTTAATACAATAATACACGGCATCACGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012309XLOC_012309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021943-exon-sc0000400-1575043694:203911..204481TCONS_00021943-exon-sc0000400-1575043694:203911..204481Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1575043694:203599..203716TCONS_00021943-exon-sc0000400-1575043694:203599..203716Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1575043694:202044..202809TCONS_00021943-exon-sc0000400-1575043694:202044..202809Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1510915933:203911..204481TCONS_00021943-exon-sc0000400-1510915933:203911..204481Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1510915933:203599..203716TCONS_00021943-exon-sc0000400-1510915933:203599..203716Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1510915933:202044..202809TCONS_00021943-exon-sc0000400-1510915933:202044..202809Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1491911889:203911..204481TCONS_00021943-exon-sc0000400-1491911889:203911..204481Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1491911889:203599..203716TCONS_00021943-exon-sc0000400-1491911889:203599..203716Clytia hemisphaericaexon
TCONS_00021943-exon-sc0000400-1491911889:202044..202809TCONS_00021943-exon-sc0000400-1491911889:202044..202809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:202044..204481 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
86.1244	81.6693	104.022	97.0733	2.57735	2.18981	25.2729	30.0366	36.6411	32.4806	43.8292	16.5527	29.2205	27.8366	22.1455	29.0878	36.2303	43.4793	38.9223	44.636	37.0607	35.2057	36.8234	34.3138	44.561	57.0736	57.0224	42.8	38.6549	34.9663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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