TCONS_00021935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021935
Unique NameTCONS_00021935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021935 ID=TCONS_00021935|Name=TCONS_00021935|organism=Clytia hemisphaerica|type=transcript|length=680bp
TCAGTCCTTTTTGGAACCTTCATGCAACAGAGATGTATCATGGACAGTCC
AAAATTGTGCTGGACATTCTGATGTTGGATCAGTTTTGAGGTTGCAAGGT
GCTCCAACAGGTTCAGGTGTAACACCATGTTTTGCAGTACCCAAAAACCA
GGTCGATAAGCCAGCTAAGTTGTACATAATGAAAATGAAGTTTAAGAACA
TTCAAGCATGGCAGGGCATCAATTCCGGACATATTGGCTTAATCTTCAAT
ATGAAGGACAACAGTAACTATGATTTTGTCTATGCAAGATTGCATTCACC
AACTGTCCAGTATGGGTTCGTGCAGAATGGTACACCAACGTTTGTGAGCA
ATCTGAACCTGTCGGGAAATAGATCTGGTGCTATTCCTCATTCGTTTCAA
ATCGATGTTTTGAAGGACAAGAGCGTTAAAGTTTATTATGATAATGCTTT
GGTTGGTACTTTCACTGCAAAGTTTCCAACATTAGCTGCTGGTGGAGTGT
TGACCTGGAATCACTACAACAATATCATTGAATTCGGAAATTTTCAATTA
ATTGCATGATTTAACGCAAAAACAAAGGAAGTTATCAATATATAAATACT
TATTATCTACTATGTTGATGTAATAGCTTTTATTATAAGCTTTTAATATT
CTTACTTTTTGTGCTCTCGAACCTCCATTA
Run BLAST on NCBI

protein sequence of TCONS_00021935-protein

>TCONS_00021935-protein ID=TCONS_00021935-protein|Name=TCONS_00021935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
QSFLEPSCNRDVSWTVQNCAGHSDVGSVLRLQGAPTGSGVTPCFAVPKNQ
VDKPAKLYIMKMKFKNIQAWQGINSGHIGLIFNMKDNSNYDFVYARLHSP
TVQYGFVQNGTPTFVSNLNLSGNRSGAIPHSFQIDVLKDKSVKVYYDNAL
VGTFTAKFPTLAAGGVLTWNHYNNIIEFGNFQLIA
Run BLAST on NCBI

transcript from alignment at sc0000400:162019..164034-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021935 ID=TCONS_00021935|Name=TCONS_00021935|organism=Clytia hemisphaerica|type=transcript|length=2016bp|location=Sequence derived from alignment at sc0000400:162019..164034- (Clytia hemisphaerica)
TCAGTCCTTTTTGGAACCTTCATGCAACAGAGGTAAGCTATTCTTCAAAG
ATTTCAATGAATTCTGAACAACAGATTCAAAAATCTCGTTTAACTATGGT
CGAACATCAGATATTCCAAAATAGGTCGTCGCCAGATGCTTCTGTAAGCA
ACAAGAAGTAGATTTCACTTTTTGTAATCTATCAAGACTCCTGAATCTAT
CCTGTTGAATCAACTCTCTAACGACTGGATAAAGCTTACAAAAAAATGTT
CCCACGGGGTACCTTGATGACATTTCCTTTCATCAGGGCGTGGGGGGGGG
GGCTTGCCAGTAGAAATTAATCAAAATTTCCACTTTTATAATTTTTCATA
TCCAATATAATGTTATGTTTTCATCTTTTTTGCCTTTTTTCATTTGTATT
AGATGTATCATGGACAGTCCAAAATTGTGCTGGACATTCTGATGTTGGAT
CAGTTTTGAGGTTGCAAGGTGCTCCAACAGGTTCAGGTGTAACACCATGT
TTTGCAGTACCCAAAAACCAGGTCGATAAGCCAGCTAAGTTGTACATAAT
GAAAATGAAGTTTAAGAACATTCAAGCATGGCAGGGCATCAATTCCGGAC
ATATTGGCTTAATCTTCAATATGAAGGACAACAGTAACTATGATTTTGTC
TATGCAAGGTGAGAAGATCTATATTCATTGAGTTACTTTATAGTTTTTGT
GCCCGAGTTTAAGAGGTGTTGTTGTTCGAGAATTTTCCAATATTTCTCTT
CTAAATAGTTTGCAAATCGAAATTTGAGAATCACGATTAAGAACCATCAT
CCTTCATAATGATGTATCTGTTTCTTGAATTCAGCAATTAAAAGTTATTT
TCACTCATTTTTTGCGTTGCGAATTAAAATAAGGATGTACAGTAAACTCT
CTCTAAATCGAATCTTTATTATTCGAATCTTTTTGTAATTCGAACTAAAA
TACTTTGTCCTCTGAAGTTCGAATTAAAAATTTCTAGACGTGAGGTTAGC
GTAGGCGGTTTTAGACCTTGTCTGTACACAAACCCATATCTACGGCTTAT
TTCAAAACCTAGTACCGTAGAGGGTCATTTGTCATTGTCCTTTCTCATTT
GAGATTTTTCAAACCGACCGCTAGGATGGAGTGTTGGTGAGAGAGGGGAG
ACGATGAGAGAAGTGTTGCTATTTATAAATCATACTTCATTGCAGAGGGC
TCCGTACGGGAATTTTTTTATCAAACAGATAATGCGTATAGAGTGTACTA
CGAAGCGATAAACGTGAGAGACACTCACTTTTAGACCATAACTTATCAGA
GGAAGAGATGTGTGATTGTAATTTCATTGTCTCTTGACGAGTGTTGTACT
TCTTCACATGTTTCTGACATACTTACTCTATTGTCTTAAATCCACCAGTG
GGTTAGGGGTTAAACATAATTTGATAGGTTTTGTTTTCCAATCTTCTAGA
TTGCATTCACCAACTGTCCAGTATGGGTTCGTGCAGAATGGTACACCAAC
GTTTGTGAGCAATCTGAACCTGTCGGGAAATAGATCTGGTGCTATTCCTC
ATTCGTTTCAAATCGATGTTTTGAAGGACAAGAGCGTTAAAGTAAGTGGT
TTCATATTGAAGAATTTATTACTTTTTCGAGTTTACGGAAATACGCAAAA
TTCACTTTGATCGTTAAGTACAATTTTGAATCACACTGTTAAGCAATTCA
ACAAAGTTTTCATCTGCGCAAAGACTTGCAAGGCAATGTTTGATAAATTT
AACATTTATTTTTCAGGTTTATTATGATAATGCTTTGGTTGGTACTTTCA
CTGCAAAGTTTCCAACATTAGCTGCTGGTGGAGTGTTGACCTGGAATCAC
TACAACAATATCATTGAATTCGGAAATTTTCAATTAATTGCATGATTTAA
CGCAAAAACAAAGGAAGTTATCAATATATAAATACTTATTATCTACTATG
TTGATGTAATAGCTTTTATTATAAGCTTTTAATATTCTTACTTTTTGTGC
TCTCGAACCTCCATTA

Coding sequence (CDS) from alignment at sc0000400:162019..164034-

>TCONS_00021935 ID=TCONS_00021935|Name=TCONS_00021935|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000400:162019..164034- (Clytia hemisphaerica)
GTTTATTATGATAATGCTTTGGTTGGTACTTTCACTGCAAAGTTTCCAAC
ATTAGCTGCTGGTGGAGTGTTGACCTGGAATCACTACAACAATATCATTG
AATTCGGAAATTTTCAATTAATTGCATGAATTGCATTCACCAACTGTCCA
GTATGGGTTCGTGCAGAATGGTACACCAACGTTTGTGAGCAATCTGAACC
TGTCGGGAAATAGATCTGGTGCTATTCCTCATTCGTTTCAAATCGATGTT
TTGAAGGACAAGAGCGTTAAAATGTATCATGGACAGTCCAAAATTGTGCT
GGACATTCTGATGTTGGATCAGTTTTGAGGTTGCAAGGTGCTCCAACAGG
TTCAGGTGTAACACCATGTTTTGCAGTACCCAAAAACCAGGTCGATAAGC
CAGCTAAGTTGTACATAATGAAAATGAAGTTTAAGAACATTCAAGCATGG
CAGGGCATCAATTCCGGACATATTGGCTTAATCTTCAATATGAAGGACAA
CAGTAACTATGATTTTGTCTATGCAAGCAGTCCTTTTTGGAACCTTCATG
CAACAGAGGTTTATTATGATAATGCTTTGGTTGGTACTTTCACTGCAAAG
TTTCCAACATTAGCTGCTGGTGGAGTGTTGACCTGGAATCACTACAACAA
TATCATTGAATTCGGAAATTTTCAATTAATTGCATGAATTGCATTCACCA
ACTGTCCAGTATGGGTTCGTGCAGAATGGTACACCAACGTTTGTGAGCAA
TCTGAACCTGTCGGGAAATAGATCTGGTGCTATTCCTCATTCGTTTCAAA
TCGATGTTTTGAAGGACAAGAGCGTTAAAATGTATCATGGACAGTCCAAA
ATTGTGCTGGACATTCTGATGTTGGATCAGTTTTGAGGTTGCAAGGTGCT
CCAACAGGTTCAGGTGTAACACCATGTTTTGCAGTACCCAAAAACCAGGT
CGATAAGCCAGCTAAGTTGTACATAATGAAAATGAAGTTTAAGAACATTC
AAGCATGGCAGGGCATCAATTCCGGACATATTGGCTTAATCTTCAATATG
AAGGACAACAGTAACTATGATTTTGTCTATGCAAGCAGTCCTTTTTGGAA
CCTTCATGCAACAGAGGTTTATTATGATAATGCTTTGGTTGGTACTTTCA
CTGCAAAGTTTCCAACATTAGCTGCTGGTGGAGTGTTGACCTGGAATCAC
TACAACAATATCATTGAATTCGGAAATTTTCAATTAATTGCATGAATTGC
ATTCACCAACTGTCCAGTATGGGTTCGTGCAGAATGGTACACCAACGTTT
GTGAGCAATCTGAACCTGTCGGGAAATAGATCTGGTGCTATTCCTCATTC
GTTTCAAATCGATGTTTTGAAGGACAAGAGCGTTAAAATGTATCATGGAC
AGTCCAAAATTGTGCTGGACATTCTGATGTTGGATCAGTTTTGAGGTTGC
AAGGTGCTCCAACAGGTTCAGGTGTAACACCATGTTTTGCAGTACCCAAA
AACCAGGTCGATAAGCCAGCTAAGTTGTACATAATGAAAATGAAGTTTAA
GAACATTCAAGCATGGCAGGGCATCAATTCCGGACATATTGGCTTAATCT
TCAATATGAAGGACAACAGTAACTATGATTTTGTCTATGCAAGCAGTCCT
TTTTGGAACCTTCATGCAACAGAGGTTTATTATGATAATGCTTTGGTTGG
TACTTTCACTGCAAAGTTTCCAACATTAGCTGCTGGTGGAGTGTTGACCT
GGAATCACTACAACAATATCATTGAATTCGGAAATTTTCAATTAATTGCA
TGAATTGCATTCACCAACTGTCCAGTATGGGTTCGTGCAGAATGGTACAC
CAACGTTTGTGAGCAATCTGAACCTGTCGGGAAATAGATCTGGTGCTATT
CCTCATTCGTTTCAAATCGATGTTTTGAAGGACAAGAGCGTTAAAATGTA
TCATGGACAGTCCAAAATTGTGCTGGACATTCTGATGTTGGATCAGTTTT
GAGGTTGCAAGGTGCTCCAACAGGTTCAGGTGTAACACCATGTTTTGCAG
TACCCAAAAACCAGGTCGATAAGCCAGCTAAGTTGTACATAATGAAAATG
AAGTTTAAGAACATTCAAGCATGGCAGGGCATCAATTCCGGACATATTGG
CTTAATCTTCAATATGAAGGACAACAGTAACTATGATTTTGTCTATGCAA
GCAGTCCTTTTTGGAACCTTCATGCAACAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012307XLOC_012307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021935-exon-sc0000400-1575043694:164003..164034TCONS_00021935-exon-sc0000400-1575043694:164003..164034Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1575043694:163377..163632TCONS_00021935-exon-sc0000400-1575043694:163377..163632Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1575043694:162444..162585TCONS_00021935-exon-sc0000400-1575043694:162444..162585Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1575043694:162019..162268TCONS_00021935-exon-sc0000400-1575043694:162019..162268Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1510915933:164003..164034TCONS_00021935-exon-sc0000400-1510915933:164003..164034Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1510915933:163377..163632TCONS_00021935-exon-sc0000400-1510915933:163377..163632Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1510915933:162444..162585TCONS_00021935-exon-sc0000400-1510915933:162444..162585Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1510915933:162019..162268TCONS_00021935-exon-sc0000400-1510915933:162019..162268Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1491911889:164003..164034TCONS_00021935-exon-sc0000400-1491911889:164003..164034Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1491911889:163377..163632TCONS_00021935-exon-sc0000400-1491911889:163377..163632Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1491911889:162444..162585TCONS_00021935-exon-sc0000400-1491911889:162444..162585Clytia hemisphaericaexon
TCONS_00021935-exon-sc0000400-1491911889:162019..162268TCONS_00021935-exon-sc0000400-1491911889:162019..162268Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021935-proteinTCONS_00021935-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:162019..164034 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150649	0.587624	0.511716	0.667512	1.01579	0.642153	4.26102	7.43425	252.057	339.023	176.742	154.56	153.544	159.457	87.7674	53.1987	36.472	74.8231	130.116	242.066	2.03918	1.81167	171.953	122.332	158.186	178.349	19.5208	15.8728	758.289	905.967
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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