TCONS_00021925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021925
Unique NameTCONS_00021925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2086

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021925 ID=TCONS_00021925|Name=TCONS_00021925|organism=Clytia hemisphaerica|type=transcript|length=2086bp
ATAGCGTAGAAATCGAAGAAGAGCCGACCACACCACGTGCACGTGCAGAA
ATTGTTGTCGAAATGGAAATTTGCATCGACTCTGTTTCATCTGCCATTAA
TGCAGAAAAGGCAGGAGCATCAAGAGTGGAACTATGCTCAAATCTTATTG
AAGGTGGCACAACACCATCTTTGGTACTTGATTTCAGGGACTTTTCAAGT
CATTAAAGAATTAACAGCAATACCAGTGTTTGTTATGGTTCGTCCTCGAG
GAGGTGACTTTCTTTACAGCGACACAGAGTTTGATGTCAtgagaaaagaa
attgaaattttcaaagaacACAAAGCTGATGGATTCGTCTTTGGCATCCT
AAACAGtgaTGGCACTGTAGATAAGAAGAGAAACAAAGAACTATTAGact
TATGCCGTCCTTCGAAAGTAACCTTCCATCGAGCTTTTGATGTGACGGTA
GATGGTAATCAAGCACTTGAACACATAATTGAAATGGGATTCGATAGAAT
ATTAACAAGTGGTATGGAAGCTACAGTACTAGAAGGTTTACCATTTCTGA
AACAATTGGTTGATCAGgctGGTGATAGAATAATTATAGTGCCTGGTGGA
GGCATATCGGAAAAGAATCTTTCGAGAATACTTGATGGTTGTAATGCTAA
GGAATTTCATGGTTCTGCTAGATCCTCAGAGCCCTCCGGAATGGAATACA
CAAGAAGTGGTGTTCCCATGGGAGGTGCTTTATATCCAGCAGAGAATGTT
ATTAAAACGAGTAATATCAATAGAATACGGACAATGATTGACATTGCAAA
gctttgacgatttttttaaagaattaagtaattggatttttccaaaaaac
actCGTTCGTTCATGCTGATGGTTTTTGAATTGAAAGATAAGGCAATTAA
AATATTGTTATGGAATTATAGGCAATTTTTTATGGATATTTAGGATTTGA
CAGCTTTTAAAAACTTGTCTCctaaaaatggaaattgattAAGGGTGGGT
AGGTTTAAATACCGGATGGCCGAAAACAAACTTTACATAATTTCAAATGC
ATATAATATTCAGGCAACTTCATCAAATCAGTTTGAATTTTTAAGATGAC
TGCCTTTTAAAGTTCTAATTTACTTCCTTTTTCCAAATTCAACTAACATT
TTCGATGTTAATCAAGATTTATGATATGGCACAAGAAAACCTCTAGCTAA
ActtattgaaattgaaaaattgacttcaattGATAAAATTTAGGAGGAAT
TGTGAATGTGGATGAAAATATCAAGCTTTAGTCTCCTGGTTTGCTTCCTC
CCGAAAATGATTGTTCTTTCTGTCTCAATGTCTTTTTAATAACAAGCTGT
CATCGTAATGACTATACCAAGAGTGATTGACTCTAAATCATTGATATAAT
CGGCTTGTAGGATTGTGGTTGTCCCGTCTTTATTTTGGTCAAGGAATTAC
CAGTTTCATATTAAATATCGCATTGTTTGCTGCTGGTTTTGAAGTTACTC
TTCAATTTTGATATCACATTCTTATTCACATTCTTGCCTGATTCACGTCA
CCACCAAAAAGTACATCAATATCCCGATGTTGATTCATTAGAAGACCAGA
TGAATATGGTCTATCTCAATAGGCTTCCACACCAAGCTGAATCAGTTTGC
TTCGCATTTTTGAATGCTGTTTTGGTTTCCAGAACATTTTAGCATCCAAT
TTCGTATGAAATTATCGTTGGTCATCTCTTTTCTTCCTTTGAGCACGTTG
GGctatcttttttgaaatattggacTTCTTCAAAACCACGGTATTTTGAT
GTAGAATGAACTGTCTTACTGTAGCTCCTTTGTTTTTAATGTCAATATTT
CAATGCTGTTGGCGATGATCAGAGTGACTTCTGAGGGACTCTATCATGGA
GTTCAATATCTTTAATGTTAGCAAAGTTTACAGCTCTTGTGATTTCAAGC
AATAATAGAGTACTGTAATTTTCACAGATGTTTTTTCtgtaaagttcaaa
tttcaAGTTATTAAAAACGctactttcaaaataaaaatgctaTATATGCT
ATTTGATCATATAGCTCATCAATTATTCAGTATTCA
Run BLAST on NCBI

transcript from alignment at sc0000400:43616..53473-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021925 ID=TCONS_00021925|Name=TCONS_00021925|organism=Clytia hemisphaerica|type=transcript|length=9858bp|location=Sequence derived from alignment at sc0000400:43616..53473- (Clytia hemisphaerica)
ATAGCGTAGAAATCGAAGAAGAGCCGACCACACCACGTGCACGTGCAGAA
ATTGTTGTCGAAATGGAAATTTGCATCGACTCTGTTTCATCTGCCATTAA
TGCAGAAAAGGCAGGTTAGTTTTTGTTTCTGTTTCTAGTGTTATTTAGGT
TTGGCTAACCTTATCAGCAGCTTTTTTCACCAGCTAGGAAGTATGAAATA
TCTGTTCTTGACTTTTGAGGTCCCTTTCGTTCGGCTTTCTTCTGGAAAAA
ACTTTATCTGTTCTGTATCCTGGGCTCTCCTGATTATATCATCTGTTCTG
GGTAAAATGGGACTCTTCCCTTGGAAAATGTATATCTGTTCTCTAGAAAT
ATTATGAAGCTCCCTAAAATCTGTCTGGCATCCGGGGGGGGGGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGCCTTTGCGGGACTTTGGCTTAAGT
GCTTGAGTGCAGCATAGGGTACAAAGTCCAAACATGCGTTTCCCGTAATT
TTTGTATGATGAGTTAGGTCTATACTGACGGTGTCAATCGAACAACTTCG
AACAAAAATTGCAATCGAACCAATCGAAAGTAATCGAACGCGATCGAATA
ATTGCGATTCGATTGTCGAACGTAATCGAATCTCAATCGAACGGCCGATT
CCTGGGTAATATTCGATTGTGTTCGATTGCGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATCACTCTGTTAGAGCTTTTTAGCGTGGGGCGGCAGAGCGCTTAT
TAAGTATAGTACGAAAGCGAATAAAATCTAAATCAATTCAATCGAACATA
CTCGAACATAATCAAATACAATCGAACGTAATCGAAGCAATCGAACGGCA
AATCCTGGGTAATATTTGATTGCGATTCGATTGCGTTCGACAATCGAATC
GCAATTATTCGATTGTGTTCAATTGCGTTCAATTGATTCGGCGTTCGATT
CGTTCGATTGACACCGTCTGGCATTCAGGGTCATTTTTTTCGCAAATTTC
GAGTCCCACGTAGGGTCCGTTTTTCAAACCTCAACAGAGCACCCCCGTCG
GTGTCGACAAGGGTAGTACCCCCGGGTCTGGCCTGGCATCTCGTTGTGTT
TTTCACAATTTAGCTCCTGGATTTTTTGAACTAGATTGTCCGCTGGAAAA
TTGTATGTGTTTTTCATTAAAATGTGCTCCTGGATTTTAAGAACAGATGT
CTGTAAAGCGACCCCTGGATTTTACCTGGGTGTTTTGAGGTAAGTCCTAG
ATTTATCCGTAAAATTTACTCTCCTATAAAAAAGAACAGATACTTCAAAA
AATTCTGCTGGCGGCTTCTTGTTTTTGGCATAAAATTTAAACCAAATAAT
GTAAACAAATTCAAACTTGGTCAAAAATACCATACTCTCAATGAGTAGCT
TTTGATGATGGGATTTTTGCTTATGTGGTGTAAATTTGAATAGGGTGAAG
GCTTCTTCATAAATGTGAAAGAGATATATACAGTATATCTATTTTTTGGA
TTCGGCATGCGGGAATAGTGTCAGGACCTGCAGGCGACCTGGTAGGGTTG
GGTATGGGTGTGGTTTGGGTGTGGTTTCGTATCAGATTGGCTAGGAATTG
GGTTATTATCAGTTAGGGTTAGGGTTGGAGCTCGAAAAAGTACGCTTCTG
GGATTTTCTCATAATATAGTCTGGTTCGCAGTTAGCAATAAGCAAAAGCT
CGTCCCAAAAAACCTGAAAAATGGCAAAAAATGAAGTTTTCAGAATGTCA
ACAATTTTTATATAGACATAAAGAATATCATTTCATGAACAATATGCAAA
AAAATCAGAGCAGGAACATGCCCCATTGAAAAGTTATGACCAGATTTCCA
ATTTCCAGGCTAAAATCCCTGGAAAGCTCACAAAAATTAAGATTTTTACA
AAATGGGCATATAAAGGCTACAAAGTAGTTAACCTTACCAAATGATTTTA
AAAATTGATAATTTTGAAGTTAATGAAAAAATACACCGTTTAGGAGTCTC
GCTATCTCCACCGTGTTCCACCGTGAAAACGGTAGGTAAAAATGCGCACT
TTAGTACTGTGGAAGGTTAGAGGAATGTAAACATTGCCAATTTTTTTCTT
TCCTTTAAAGAGAATGTTTTAGATATTTGAACATGATATCAATGATAATT
TTATGAATTTCTCCTGAAAATTTCTCAAAAATTCATCTGGAGGAAAAGAA
GTTATGATTAAAAGGAGTTCTTTACCTACCGTTTCTCTGCTAGGTTTCCT
TACGAGAACCGGAATTTTACCTACCGTTTTTTACGCGGGAAAGAGCGGTC
ACTGAAATCAAAACAATGGAAAATTGTTTGGACGCGTGCAAAGTCGACAC
TCCTGAACGGTGTATTAAGTCATTTCAGATGTCCAATGGAGTTTTTTGGG
GGTCTAAAATTCTGTGTGTCGTGACGGAAAATCATAACTTCTAAATGAAA
TTGAACAAAGCAGAATTTTTTCAGTTTTTAAATGTTTAAAATATTAGACA
TGGAACTGTTGAGAATCACTAAGAGAATTCGCTCTAAAACACCAAGGTAA
TTTTTTAGTGTACTTTAAAGTTTGCGTTGCGCCGTGACGGAAAATCCAGG
TTGGCGTTTTAAAATTATCTTTTCTCCAAAACTTGTTCATCAATCAACTT
TATGTTTATATGACATGATCAAACAAGTCATCTGGTAATATTTAGCTGCT
AAAATTTAATTTTAGACTTCCTTAGAAATAGCCAAGGGAAAAATACTAAG
AGATTTTTTTTCAAAAATGTTTCATTCTCATTTTTTTCCAAAAATGTCCA
TATTTTTTAAACAGTGCTAATTTTTCAGTATATGATTTTTGATCTTCGAA
AATACATGCCTTGGGAAATATTTAATAATTGTTTTGATGGCAATATGTTG
AAATACAATGAGAATAATATATTATTCATATTTGTGATTTTCATTGTTTC
ATCAAATTTTAAGCCAAATGGGCCATTTATTGACCTTTCAAGAACCAATA
TCTTTCCAGCACATTCACAAAACCCCATGATGTTATATACCATTGAAAGC
GAAATTTTTAATAGATTCTGAATATCTAATTTTTAAAATCCAAAATTTTG
TTGGGTGAGAGCTATAGTGCTTTAAGTAGTTTTTTCAACAGCTGGGACGA
GCTTTTTGCTTATTGCTAAGTTTGTACAATATGAATAGCTGTCAGAAAGG
TTTTCCTGGCATGAATCCGCGGGGCAGTGGATAAGGCATTGGTTTTCCAA
ACGACGGAACTTTGCATTTGGTGGGATTCGGAAGTCATTCAGTCAGTTAG
AAAACATAGAAAACAACTCACATTGAACCAGGAAGTCAGAAAAACTACAA
ACAAGAGACTGGAAAGTACGAAATAAGTCCAGGCATGTCTTTCGTCTTTA
TGAAGAAGCCACGACCTTTGAATAGAGAGTATGGATCTCCAGACTAGTCT
GACCCTAGAGCCTGGAGATCCATGCTATGACTTCTTATTTTATATCGTAT
ATTAGTCTAATTTCAAGATCTCTCTTCTAATTCCGACACCCATCTTTAAA
TCTTGGATTAATCGAAGGTCTGAATCCTTGATTGAAACTTTATTTCTTTG
CTAAGTGGTGAAAACTTATTTTTTCAATCAGTGATTCAGAACTTTCTGCT
ATTCCTATCTACGAAAAGGGTGTCAGGTTTTAGATGAGGAATGTCGACAT
TAGACCAACTTTCGGTAGCATGGTATGGGCTAAGAGTTTGAATTTCCCAG
ATCCTATTGATGGTTGCAAACATATCATCGTGAAGTCGGGTAACTTGCAT
CAGTGGAGGGAAACTTGCATACCCCTCAAATGCAAAGTTAAATCAAAACA
AAAATGGAGCAGTAGATCTGCGAGCGGTTTAGTTAGTTCATTTGTTTTGA
TATTTTGCTGCTTTGTTTGGTCAGTCATTTGAGGGCTATGCAAGTTTCCC
TCCACTGATGCAAGTTACCCTACTTCATGGTAGCCAATCAAATTTTGTTA
TTCTTTTACTGGTCACACTTTTTTCAAGAAAGCGTAAGTTTCGAAAAATG
GTTTTTATTTTAATAAGGGAGGACATCGCTAAGTTCCAATTTCCCACTGT
AAATTTTTTGAGGCAGAAATCTGCCTCACAGCTCATACCCGTCCAGTATA
GGGTATATCAGATTATAAAAATACAGGACAGGTCTCTTTGAACCATGATT
AACGAGGATTAAGAAGTTTTTCTTACAAAAAAAGTGAAGTCTCTACATTT
AAGTGAGTAGAAACATTCAAAAAGTGACGTCAAGATAAAGATTCTTGAAA
ACACAGGAAAAATGTCCAAAATTATTAATCCTACTATCAAACAACAGAAG
TTAACCGGCGGGATCAATTAATTGCAATCTAATTGTGATTAGCGCTAATC
TGGATTTACTTTAATTGATTTTTGAACAACTAGGCCCGGGCATCTACCCT
AGATTTGTCTGACCTCGACATGCGTCTTGTTATCTGCGACACTGAATCTG
CAAAATAGTTAAAACAAATCTTAAATGAAAGTCTTGGTATTATTCTCATC
GAACAAGTTCATCTATCAAACAAGAAGTTCAATTAACATTGCAATTCTTT
CAATTAAAAACGCAGCCAAATAAGAGAAGCAATTTTACACAACACATGAA
ACGCATGCAAATGTTCTCGTGTCAATCATAAAATTTTAAAACTTTAAAAT
TACGCTTCAAGTCGCGTGATCGAAACAATTTGCAAGCTTAGTCGGCCTAA
TTTCCCCGTCCTTATTTATTAAAAACACACGCTCTAGGTGCTAAGAGGCC
ACACATACATACAACTCCCTATTTTTCATTTCCATCCCTGTGATGGCCAG
TGTGGCGATCACATTGTGTCCTATGACCTGTGTTTTACACTAACCATTTA
AAAAAACCTCTTTGCAAATATGTTGTTACACACGAGCGTTATTTTAAGTG
TTGTCGATTTCACTTTCATTTGTAGAAAGAAAAATGGTTTTGGAGACACT
AGAAAGGGTTTCGGGTCTGTGGGATGGAGCATGTTGCATTGCACCAACGC
AAAAAAAACTTTAGAAAGTCAAAAAATTAGAAAAAAGATAGGAAAATAGG
AAGTTAGGGAAAAATAGGAGACGCTGCATCCTAGAGGGTGATATTATTCT
AAGGGTACCTTAGGCTCTTCCCAATGGCTGAATGAGGTTCAGGCCCTTTA
TGAAATGTTTTTAAGTTTTCGACAAAAGAAAATTTTTATTAATATCTTGC
TGACTTCAGCAAAAAACATTTTTGCTTAAAAATGCTGATATGTGCTGATT
TTAATGTGAAATTTTAGTGAAATGCTTCCTTTCATTGAATTACATTTCAG
GTCAGCTGTATTTCATTCATGTTCCTCTGACATCATCAAAATTATGAGAA
TAGGCCTAAAAATAAGATATTTCTAAATTTTTTGTGTGAGTAACAGCCAT
TATCCCTACCTACAATGGCTCAGAAATTTTAGAATAAAAATTAGATAAAA
TGTTTTAAAGGGACATAACAGTACTTGCGAAATTTTTAAACAAAATGTAT
GCAGCCAATACAAATGAAAACAAATATCACATGTCAAAATAAAAAATCAA
ACCAAATATGGCTAATTTTGATTGTTTAATTGTTTTACAAGTTAGTTTTG
GACATGTGATTTTAATTGTTCTCTTTAATGACACGTGGTTTGCGCGATGT
TTACATTTTACTACTTTTATGTCCCTTTAAAGCAAAATACCTTATTGGAA
CTAATTTTCGCGGAACTAATTTTTGCGGTCGAAAAAATATCCGAAAAATT
GCATTTCGCGGGTTTTAATTTTCGCGGTTTTTTCCATTCAAATTTTTCGA
TAAAATTGGAAAAAATTGTATTTCGCGGGGAATTAATTTTCGCGGTTTTC
AACTCTCAAAATTTTTCGCGGTTTTCAACTCTCAAAATTTTTCGTGGGAT
CAAATTTTTCGCGATTTTAAGACGAAAAACTGCGAAAAACGCTAAAATTA
AAACCCGCGAAAATTAGTTCCAATAAGGTAGGTATTTCAAGAATTTCTTA
GCAAATCGAGAGTGATAAACAAAAAAAAATCATTAGACAAAAAGAAACAA
GTATAAAACTTTTACACATTTTCATTGGCCATCTTGGATTATATGCAAAA
ATACACACCTTTAAAGTCATTTTACATTCAGAAAAGTTTTTATAAAATTA
ATTTGTATATATCTATTTCAAATTTTGGGAAGTCTGATTGCCTTTCAAAG
TACACTTTATTGTTGGGGTTGGGTGTTGAAGAAAACCCAATAAAATTCAT
TTCCTTTTAATTTTTGACAGGAGCATCAAGAGTGGAACTATGCTCAAATC
TTATTGAAGGTGGCACAACACCATCTTTGGGTAAAGAAGTTTCACTTAAA
AAAAAAGTTCTGTGTTAAACTGTATATTCATTTATCATTTGTCTTCTATT
ATGATGAGTAAATACCTCTAAAGAGTCCCTATACTTTAAAAAAGAAAGAA
AGATACAAAAAGTTCTCAAAATTTTTTAAGATCATGTCTAGTACTGTAGG
TAAAATTATAAATGAATTATTTGTACTTTAATTTGATCAATTTTGATTTA
AATCTTTCAGTACTTGATTTCAGGGACTTTTCAAGTCATTAAAGAATTAA
CAGCAATACCAGTGTTTGTTATGGTTCGTCCTCGAGGAGGTGACTTTCTT
TACAGCGACACAGAGTTTGATGTCATGAGAAAAGAAATTGAAATTTTCAA
AGAACACAAAGCTGATGGATTCGTCTTTGGCATCCTAAACAGGTTTAGTC
TAGATTCTATTTAACACCATTTTATCAGGCTTTTTTGAGCATCAAGGTTT
ATTAATTATTGCAATATCTGAACGCAGTACGAACTATTTAACATGATTGT
CCATGCATTATATTTTTTACATATTATCGCTTCTAAATCATACTTTCAAA
TACCTCTGACAAACATTTATTACACATTATTTAGTACTGCAGTGCATATT
TACAAATTAAACAGCATCTTCCTCATTTTTATTTATTTTTTACTTTTTAG
TGATGGCACTGTAGATAAGAAGAGAAACAAAGAACTATTAGGTTTGTATT
TTTAATAAGTCTCAGTCAAGAATATTAAGAACATCCTTTCTTTTAGAAGA
AAACACTAATTTGGCAGCGTTTTTTGAAAAAATGCTTCATACTTTTATCA
TTTTTCTTTTTTTAGACTTATGCCGTCCTTCGAAAGTAACCTTCCATCGA
GGTAAAGATAGATTTTTTTTATTTGTTTTAACTTAAACTATCTGTAATCT
GAGTTGATTTGTGTATCATTACTGCAATTTTATCTCCAGCTTTTGATGTG
ACGGTAGATGGTAATCAAGCACTTGAACACATAATTGAAATGGGATTCGA
TAGAATATTAACAAGTGGTATGGAAGCTACAGTACTAGAAGGTTTACCAT
TTCTGAAACAATTGGTTGATCAGGTACACATTTTTTGACACCCCAAACAT
TTTCATATTCTGATTCAGATATTGATCCAAAATTTCAAAGATTGTGCTAT
GATATTACTAAGATCAATTTTTATTAACAGCACACATATTGCAGAATCAC
CGTTACAATTGATATGATTATAAACTTCTAATCTCTGAGCTACTAAAAAA
TCCCTAGAGTTTTTTCCTAGAGAAAAAGTTTTCTCTCAGAGAAATGGAAT
AGCTGGATAATAATAGACTGATAAAATTAGATTTAATTAAAAGTTGATAT
CTGAAGCCTTTTACCCAGTGCGCGTAAAATTAGAGCTGCACATCAGTGAA
ATTGGTTGTTCATGATTCATCTTCTTGTTTTTTCAAAAGGCTGGTGATAG
AATAATTATAGTGCCTGGTGGAGGCATATCGGAAAAGAATCTTTCGAGAA
TACTTGATGGTTGTAATGCTAAGGAATTTCATGGTTCTGCTAGATCCTCA
GAGCCCTCCGGAATGGAATACACAAGAAGTGGTGTTCCCATGGGAGGTGC
TTTATATCCAGCAGAGAATGTTATTAAAACGAGTAATATCAATAGAATAC
GGACAATGATTGACATTGCAAAGCTTTGACGATTTTTTTAAAGAATTAAG
TAATTGGATTTTTCCAAAAAACACTCGTTCGTTCATGCTGATGGTTTTTG
AATTGAAAGATAAGGCAATTAAAATATTGTTATGGAATTATAGGCAATTT
TTTATGGATATTTAGGATTTGACAGCTTTTAAAAACTTGTCTCCTAAAAA
TGGAAATTGATTAAGGGTGGGTAGGTTTAAATACCGGATGGCCGAAAACA
AACTTTACATAATTTCAAATGCATATAATATTCAGGCAACTTCATCAAAT
CAGTTTGAATTTTTAAGATGACTGCCTTTTAAAGTTCTAATTTACTTCCT
TTTTCCAAATTCAACTAACATTTTCGATGTTAATCAAGATTTATGATATG
GCACAAGAAAACCTCTAGCTAAACTTATTGAAATTGAAAAATTGACTTCA
ATTGATAAAATTTAGGAGGAATTGTGAATGTGGATGAAAATATCAAGCTT
TAGTCTCCTGGTTTGCTTCCTCCCGAAAATGATTGTTCTTTCTGTCTCAA
TGTCTTTTTAATAACAAGCTGTCATCGTAATGACTATACCAAGAGTGATT
GACTCTAAATCATTGATATAATCGGCTTGTAGGATTGTGGTTGTCCCGTC
TTTATTTTGGTCAAGGAATTACCAGTTTCATATTAAATATCGCATTGTTT
GCTGCTGGTTTTGAAGTTACTCTTCAATTTTGATATCACATTCTTATTCA
CATTCTTGCCTGATTCACGTCACCACCAAAAAGTACATCAATATCCCGAT
GTTGATTCATTAGAAGACCAGATGAATATGGTCTATCTCAATAGGCTTCC
ACACCAAGCTGAATCAGTTTGCTTCGCATTTTTGAATGCTGTTTTGGTTT
CCAGAACATTTTAGCATCCAATTTCGTATGAAATTATCGTTGGTCATCTC
TTTTCTTCCTTTGAGCACGTTGGGCTATCTTTTTTGAAATATTGGACTTC
TTCAAAACCACGGTATTTTGATGTAGAATGAACTGTCTTACTGTAGCTCC
TTTGTTTTTAATGTCAATATTTCAATGCTGTTGGCGATGATCAGAGTGAC
TTCTGAGGGACTCTATCATGGAGTTCAATATCTTTAATGTTAGCAAAGTT
TACAGCTCTTGTGATTTCAAGCAATAATAGAGTACTGTAATTTTCACAGA
TGTTTTTTCTGTAAAGTTCAAATTTCAAGTTATTAAAAACGCTACTTTCA
AAATAAAAATGCTATATATGCTATTTGATCATATAGCTCATCAATTATTC
AGTATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012303XLOC_012303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021925-exon-sc0000400-1575043694:53360..53473TCONS_00021925-exon-sc0000400-1575043694:53360..53473Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1575043694:46594..46653TCONS_00021925-exon-sc0000400-1575043694:46594..46653Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1575043694:46182..46363TCONS_00021925-exon-sc0000400-1575043694:46182..46363Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1575043694:45883..45923TCONS_00021925-exon-sc0000400-1575043694:45883..45923Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1575043694:45723..45758TCONS_00021925-exon-sc0000400-1575043694:45723..45758Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1575043694:45501..45634TCONS_00021925-exon-sc0000400-1575043694:45501..45634Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1575043694:43616..45134TCONS_00021925-exon-sc0000400-1575043694:43616..45134Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:53360..53473TCONS_00021925-exon-sc0000400-1510915933:53360..53473Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:46594..46653TCONS_00021925-exon-sc0000400-1510915933:46594..46653Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:46182..46363TCONS_00021925-exon-sc0000400-1510915933:46182..46363Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:45883..45923TCONS_00021925-exon-sc0000400-1510915933:45883..45923Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:45723..45758TCONS_00021925-exon-sc0000400-1510915933:45723..45758Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:45501..45634TCONS_00021925-exon-sc0000400-1510915933:45501..45634Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1510915933:43616..45134TCONS_00021925-exon-sc0000400-1510915933:43616..45134Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:53360..53473TCONS_00021925-exon-sc0000400-1491911889:53360..53473Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:46594..46653TCONS_00021925-exon-sc0000400-1491911889:46594..46653Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:46182..46363TCONS_00021925-exon-sc0000400-1491911889:46182..46363Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:45883..45923TCONS_00021925-exon-sc0000400-1491911889:45883..45923Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:45723..45758TCONS_00021925-exon-sc0000400-1491911889:45723..45758Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:45501..45634TCONS_00021925-exon-sc0000400-1491911889:45501..45634Clytia hemisphaericaexon
TCONS_00021925-exon-sc0000400-1491911889:43616..45134TCONS_00021925-exon-sc0000400-1491911889:43616..45134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:43616..53473 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594384	1.30914	0.283669	1.70726	0	0	0	0	0.23722	0	1.81418	0	0	0	4.27157e-09	0	0.168823	0	0.0946783	0	0	0	0.0730808	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00021925 vs. Swiss-Prot (Human)
Match: CUTC (Copper homeostasis protein cutC homolog OS=Homo sapiens GN=CUTC PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.579e-72
Identity = 105/205 (51.22%), Postives = 149/205 (72.68%), Query Frame = 1 
Query:  187 GTFQVIKELTAIPVFVMVRPRGGDFLYSDTEFDVMRKEIEIFKEHKADGFVFGILNSDGTVDKKRNKELLDLCRPSKVTFHRAFDVTVDGNQALEHIIEMGFDRILTSGMEATVLEGLPFLKQLVDQAGDRIIIVPGGGISEKNLSRILDGCNAKEFHGSARSSEPSGMEYTRSGVPMGGALYPAENVIKTSNINRIRTMIDIAK 801
            G  QV+K+   IPVFVM+RPRGGDFLYSD E +VM+ +I + K + ADG VFG L  DG +DK+    L+ +CRP  VTFHRAFD+  D   ALE ++ +GF+R+LTSG +++ LEGLP +K+L++QA  RI+++PGGGI+++NL RIL+G  A EFH SARS+  SGM++  S V MG +L  +E  +K +++ ++RT+  IAK
Sbjct:   65 GVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSVAMGASLSCSEYSLKVTDVTKVRTLNAIAK 269

HSP 2 Score: 61.6178 bits (148), Expect = 6.579e-72
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:   63 MEICIDSVSSAINAEKAGASRVELCSNLIEGGTTPSL 173
            ME+C+DSV SA+NAE+ GA R+ELCS L EGGTTPS+
Sbjct:   28 MEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSM 64
The following BLAST results are available for this feature:
BLAST of TCONS_00021925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CUTC6.579e-7251.22Copper homeostasis protein cutC homolog OS=Homo sa... [more]
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