TCONS_00021919 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021919
Unique Name	TCONS_00021919
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	937

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000400:184769..188705+
coding sequence from alignment at sc0000400:184769..188705+

transcript sequence

>TCONS_00021919 ID=TCONS_00021919|Name=TCONS_00021919|organism=Clytia hemisphaerica|type=transcript|length=937bp
ACATTATTCCAATTTATAGAGGACTTAAGAAAGATGATAGcTGCCCTACC
TTCAACATACCATGGTCAAAACAAAccgaagaaaaatcaaaatggtggAA
AACAGAAAATTAGACTCGATCACCCAGATTTGGGAAAAGGTGGAAGTCAA
AAGGCTTATTATTGGTATCAGATGACTGGCAAAGACAAACATGTCGTCCC
TACAGCTAAAGATGAAATAAAACCTACAGAAAAGAAACGAAATTCATTGG
TCATGAAAACAAGGAAAATACAAGTCCAACCTTCCAACCTTGGTAAAAGT
GAAAATACTCCAGATGGGAATATTTCAACGAAAAGTATCAACAATGATGA
AGAAGCTATGAAACGGGTAGATGATCTAGAGGCTGAGAAGACAAGCCTGG
TTGAACTTTTACAAGTTCTACCCTCTAGTTGTAAGATACCAGAACGCATT
AAAACACCTATACAATCTTCACCAGAACCTAATCAAGAGGTCAATTTACC
CTCCACTGAACCAAAGAAAATCGTAGCTTTTTTACCAAGAGTTATCGAAG
TCCAACCATATAGCAATGAGAACGATGATATTCAAAATTCGGACAATGTA
CAATTTTCGGACGATATAGAAAGTCTTGATTCTGATCGGATTGACGACGA
ATGTTTAAAAAGGAATAATATTGAAATTAAAGAATTTCTGTTTGACTGTA
ATAAAACCGATGACTCTAGACAAGACCCTCCTGGTTATATTCCAAAGTAT
AAACCATACGTACCTATGTCGTATGATATTTATCCTTATAAATAATGAAA
AGACAACACTTAGACCATGTATGGATGTTACGGTTTCGTATCGTTCCGGT
ATGGTTTCCGTTACGGATCTAGAATGCTCATATTGGTTTcagaacgtttc
ggagcaagaaaacggagcagttccgtccCGATGAAAA

Run BLAST on NCBI

protein sequence of TCONS_00021919-protein

>TCONS_00021919-protein ID=TCONS_00021919-protein|Name=TCONS_00021919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
TLFQFIEDLRKMIAALPSTYHGQNKPKKNQNGGKQKIRLDHPDLGKGGSQ
KAYYWYQMTGKDKHVVPTAKDEIKPTEKKRNSLVMKTRKIQVQPSNLGKS
ENTPDGNISTKSINNDEEAMKRVDDLEAEKTSLVELLQVLPSSCKIPERI
KTPIQSSPEPNQEVNLPSTEPKKIVAFLPRVIEVQPYSNENDDIQNSDNV
QFSDDIESLDSDRIDDECLKRNNIEIKEFLFDCNKTDDSRQDPPGYIPKY
KPYVPMSYDIYPYK

Run BLAST on NCBI

transcript from alignment at sc0000400:184769..188705+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021919 ID=TCONS_00021919|Name=TCONS_00021919|organism=Clytia hemisphaerica|type=transcript|length=3937bp|location=Sequence derived from alignment at sc0000400:184769..188705+ (Clytia hemisphaerica)
ACATTATTCCAATTTATAGAGGACTTAAGAAAGATGATAGGTAAGTTGGT
TTTGctacaaaatttggaaatttttgccaccgcaggaagcctaaagcttc
cgaggatggcattcatagcttcactcgtgagggaaagttgggaaaacatc
tcataattttgcgcgcgcgtTTCAGNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNAACAAAAGTAacggctatcagtaacatttctttccaaattcaacaa
cttatttgatcgttcttctgcggtggcactttaatgaaaattatggctag
ttaTTTTAAACGAAAAGGGAAAAAAGAATATTGAAACTATGATaaccttt
tttctgatttctgaaACGTATATATTTGAAACTTTGAACGTGACATTTTC
AGAATACCATTAAAATACTGTTAGGAGCCTAAAGtgactttgtttacaaa
agGGTTCCAGGGTAGCTATAGTAACTAAGGAATGTCTAGATTCTACTTCA
CAAGtttgaaaatatcaattttgagTTGAAATTCCATCTTTCTATCGAGA
AGTTATTTACATAATGCAAAAACAAACTTGGTcgataaaaaaaacacaat
ataATGTTTCTAACCAACAAGTGTCTATAAAGGGGGATtctattttgtat
tttgattaCATCTTTGTGATAAAGTAATATACTTGATTGATTGATAGGAA
CGTTTGTCAAAAGCATCTGCTAGTCTGTTGCTAGTCCTTTTTCCCTTGTT
TTTGGGATAGCAGTCTTGGTAAAACGCTAGTATTTTTTTATGGATTATGG
CAAACGTAAAGAGcaataaaaaggagaaaatcaaaaaatttatccactcA
GCAGCAACTAATCTAACATACatggatatttttattccagcTGCCCTACC
TTCAACATACCATGGTCAAAACAAAccgaagaaaaatcaaaatggtggAA
AACAGAAAATTAGACTCGATCACCCAGATTTGGGAAAAGGTGGAAGTCAA
AAGGCTTATTATTGGTATCAGATGACTGGCAAAGACAAACATGTCGTCCC
TACAGCTAAAGATGAAATAAAACCTACAGAAAAGAAACGAAATTCATTGG
TCATGAAAACAAGGAAAATACAAGTCCAACCTTCCAACCTTGGTAAAAGT
GAAAATACTCCAGATGGGAATATTTCAACGAAAAGTATCAACAATGATGA
AGAAGCTATGAAACGGGTAGATGATCTAGAGGCTGAGAAGACAAGCCTGG
TTGAACTTTTACAAGTTCTACCCTCTAGTTGTAAGATACCAGAACGCATT
AAAACACCTATACAATCTTCACCAGAACCTAATCAAGAGGTCAATTTACC
CTCCACTGAACCAAAGAAAATCGTAGCTTTTTTACCAAGAGTTATCGAAG
TCCAACCATATAGCAATGAGAACGATGATATTCAAAATTCGGACAATGTA
CAATTTTCGGACGATATAGAAAGTCTTGATTCTGATCGGATTGACGACGA
ATGTTTAAAAAGGAATAATATTGAAATTAAAGAATTTCTGTTTGACTGTA
ATAAAACCGATGACTCTAGACAAGACCCTCCTGGTTATATTCCAAAGTAT
AAACCATACGTACCTATGTCGTATGATATTTATCCTTATAAATAATGAAA
AGACAACACTTAGACCATGTATGGATGTTACGGTTTCGTATCGTTCCGGT
ATGGTTTCCGTTACGGATCTAGAATGCTCATATTGGTTTcagaacgtttc
ggagcaagaaaacggagcagttccgtccCGATGAAAA

Coding sequence (CDS) from alignment at sc0000400:184769..188705+

>TCONS_00021919 ID=TCONS_00021919|Name=TCONS_00021919|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0000400:184769..188705+ (Clytia hemisphaerica)
ACATTATTCCAATTTATAGAGGACTTAAGAAAGATGATAGcTGCCCTACC
TTCAACATACCATGGTCAAAACAAAccgaagaaaaatcaaaatggtggAA
AACAGAAAATTAGACTCGATCACCCAGATTTGGGAAAAGGTGGAAGTCAA
AAGGCTTATTATTGGTATCAGATGACTGGCAAAGACAAACATGTCGTCCC
TACAGCTAAAGATGAAATAAAACCTACAGAAAAGAAACGAAATTCATTGG
TCATGAAAACAAGGAAAATACAAGTCCAACCTTCCAACCTTGGTAAAAGT
GAAAATACTCCAGATGGGAATATTTCAACGAAAAGTATCAACAATGATGA
AGAAGCTATGAAACGGGTAGATGATCTAGAGGCTGAGAAGACAAGCCTGG
TTGAACTTTTACAAGTTCTACCCTCTAGTTGTAAGATACCAGAACGCATT
AAAACACCTATACAATCTTCACCAGAACCTAATCAAGAGGTCAATTTACC
CTCCACTGAACCAAAGAAAATCGTAGCTTTTTTACCAAGAGTTATCGAAG
TCCAACCATATAGCAATGAGAACGATGATATTCAAAATTCGGACAATGTA
CAATTTTCGGACGATATAGAAAGTCTTGATTCTGATCGGATTGACGACGA
ATGTTTAAAAAGGAATAATATTGAAATTAAAGAATTTCTGTTTGACTGTA
ATAAAACCGATGACTCTAGACAAGACCCTCCTGGTTATATTCCAAAGTAT
AAACCATACGTACCTATGTCGTATGATATTTATCCTTATAAATAAACATT
ATTCCAATTTATAGAGGACTTAAGAAAGATGATAGcTGCCCTACCTTCAA
CATACCATGGTCAAAACAAAccgaagaaaaatcaaaatggtggAAAACAG
AAAATTAGACTCGATCACCCAGATTTGGGAAAAGGTGGAAGTCAAAAGGC
TTATTATTGGTATCAGATGACTGGCAAAGACAAACATGTCGTCCCTACAG
CTAAAGATGAAATAAAACCTACAGAAAAGAAACGAAATTCATTGGTCATG
AAAACAAGGAAAATACAAGTCCAACCTTCCAACCTTGGTAAAAGTGAAAA
TACTCCAGATGGGAATATTTCAACGAAAAGTATCAACAATGATGAAGAAG
CTATGAAACGGGTAGATGATCTAGAGGCTGAGAAGACAAGCCTGGTTGAA
CTTTTACAAGTTCTACCCTCTAGTTGTAAGATACCAGAACGCATTAAAAC
ACCTATACAATCTTCACCAGAACCTAATCAAGAGGTCAATTTACCCTCCA
CTGAACCAAAGAAAATCGTAGCTTTTTTACCAAGAGTTATCGAAGTCCAA
CCATATAGCAATGAGAACGATGATATTCAAAATTCGGACAATGTACAATT
TTCGGACGATATAGAAAGTCTTGATTCTGATCGGATTGACGACGAATGTT
TAAAAAGGAATAATATTGAAATTAAAGAATTTCTGTTTGACTGTAATAAA
ACCGATGACTCTAGACAAGACCCTCCTGGTTATATTCCAAAGTATAAACC
ATACGTACCTATGTCGTATGATATTTATCCTTATAAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012300	XLOC_012300	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00021919-protein	TCONS_00021919-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00021919-exon-sc0000400-1491911889:184769..184808	TCONS_00021919-exon-sc0000400-1491911889:184769..184808	Clytia hemisphaerica	exon
TCONS_00021919-exon-sc0000400-1510915933:184769..184808	TCONS_00021919-exon-sc0000400-1510915933:184769..184808	Clytia hemisphaerica	exon
TCONS_00021919-exon-sc0000400-1575043694:184769..184808	TCONS_00021919-exon-sc0000400-1575043694:184769..184808	Clytia hemisphaerica	exon
TCONS_00021919-exon-sc0000400-1491911889:187809..188705	TCONS_00021919-exon-sc0000400-1491911889:187809..188705	Clytia hemisphaerica	exon
TCONS_00021919-exon-sc0000400-1510915933:187809..188705	TCONS_00021919-exon-sc0000400-1510915933:187809..188705	Clytia hemisphaerica	exon
TCONS_00021919-exon-sc0000400-1575043694:187809..188705	TCONS_00021919-exon-sc0000400-1575043694:187809..188705	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000400	supercontig	sc0000400:184769..188705 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536065	0.353157	1.19093	0.474231	9.91976	4.01101	18.9371	21.3542	9.69257	8.19749	5.35781	5.72365	0.710498	0.879213	0.517921	1.20575	1.18227	1.88376	2.45567	2.5058	2.45849	2.26691	2.73379	0.394705	0.487319	0.268277	6.57549	6.29982	1.85137	1.62575

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00021919 vs. Swiss-Prot (Human)

BLAST of TCONS_00021919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00021919 (transcript) - C. hemisphaerica