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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021906 ID=TCONS_00021906|Name=TCONS_00021906|organism=Clytia hemisphaerica|type=transcript|length=1381bp
GCTTTTCTAAGGGCTCATTTCTTGGAGTTGTTTCAAAATAATGTCAAATG
TCAATGAATATTATTTACTACATAACACAGATTGAAAAACAATCAATaca
caataaaaacaaaaccgtgcaaaaaattcaatttcaaaattcaaaaatta
aattttggagTCAGTCCCCATATCGGTTCTTGAGCCGTCCATTTTCGGTT
TATTCTTATCAAGCTTCAAGATAGTCCGTAGTCGTTTCCTTGCGTCCGGT
TGCTTTGATAGATAAACGAACGGGTTCAGACACGAATTAAGTCCAGCTAC
GGAAATTCCGAACACGTACCAATGTTGCAACGGTTCTCTCTGTATTATTG
AGAATGTAGGGTTCAGAATACTAAAAATAAGCCATAAATTAAATGGCGCC
ATACAGATACAGTATATACCAAGTAACCAAGCAACCGCGCGTGCTGTTTT
TAAATGTCGTCTTTGTGAACGTTTAGCCTGCCTCGCAGCTAGTTTGTTGG
CCGTGTCAGGAACGGATAACGTTGAGACTGGTGCAGGAAGATTAGATACT
TTATTGCTTTGGCCAAGTATATGACGACGGCCGTGCAAGTTCAATTTCTT
CTCACTTCTGTATATTTCACGGACCAGTAAAAAGTAAAAGACGATAATGA
AAAGAATGGGTCCATAAAATATAAACACCAGCGATGCAAGGTAGGGGTAA
ATGTTTTCTACATATCGCAGTGATATTGTGATACCAGGGTATACCCAACA
TATCACTATCAAAACTGGAAGAATTTTATTATTCATTAAAGTATTATAGC
GAGTGTACTTGCACATTAAGAGCCAACGATCAAAAGAGATGAGCGCCAGG
GTTAGATTTGAAGATCCTGTTAGAATTAAAGAAACCATGGAACGGATGTT
ATCTAAATCACAACTTTCTATATGATCCGAAACCATCTCATATGTTGAAA
TCGGGAAACCAACTAACCCGGTTAACATATCGGATACTGCAAGCGAGACA
AGGATTTTGTTGGATTTGGTGATTTGTCGCGAGGTTGTCCATAAAATGTA
AAGAGCGATTATATTCCCGACTGCAGCTACGATCGCGAAAATTGTAAATA
GAGTTCCGTAAACGTAAGTTGTCGGTGGTACAATTAACGAGAATCGATGA
GTCGTGCACATCTTTCGGTTCTCGGTCGTTTGAGTTCGGAAAATCGTTGT
GACTAAAAGCTActtcaattttaaacttttctcatctctaagaatttctt
ttgttgtagctttttgtatttaattttactttaatcTAAGATAAAAGGAA
TTATAGGAATGGACAAATTTTTCAAGTCACACGGAATAGAATCATAAGTG
ATCCCGTCCATAGTGAAAGCTTTAAAATAGC Run BLAST on NCBI protein sequence of TCONS_00021906-protein >TCONS_00021906-protein ID=TCONS_00021906-protein|Name=TCONS_00021906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MCTTHRFSLIVPPTTYVYGTLFTIFAIVAAVGNIIALYILWTTSRQITKS
NKILVSLAVSDMLTGLVGFPISTYEMVSDHIESCDLDNIRSMVSLILTGS
SNLTLALISFDRWLLMCKYTRYNTLMNNKILPVLIVICWVYPGITISLRY
VENIYPYLASLVFIFYGPILFIIVFYFLLVREIYRSEKKLNLHGRRHILG
QSNKVSNLPAPVSTLSVPDTANKLAARQAKRSQRRHLKTARAVAWLLGIY
CICMAPFNLWLIFSILNPTFSIIQREPLQHWYVFGISVAGLNSCLNPFVY
LSKQPDARKRLRTILKLDKNKPKMDGSRTDMGTDSKI Run BLAST on NCBI transcript from alignment at sc0000396:92549..93929 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021906 ID=TCONS_00021906|Name=TCONS_00021906|organism=Clytia hemisphaerica|type=transcript|length=1381bp|location=Sequence derived from alignment at sc0000396:92549..93929 (Clytia hemisphaerica)
GCTATTTTAAAGCTTTCACTATGGACGGGATCACTTATGATTCTATTCCG
TGTGACTTGAAAAATTTGTCCATTCCTATAATTCCTTTTATCTTAgatta
aagtaaaattaaatacaaaaagctacaacaaaagaaattcttagagatga
gaaaagtttaaaattgaagTAGCTTTTAGTCACAACGATTTTCCGAACTC
AAACGACCGAGAACCGAAAGATGTGCACGACTCATCGATTCTCGTTAATT
GTACCACCGACAACTTACGTTTACGGAACTCTATTTACAATTTTCGCGAT
CGTAGCTGCAGTCGGGAATATAATCGCTCTTTACATTTTATGGACAACCT
CGCGACAAATCACCAAATCCAACAAAATCCTTGTCTCGCTTGCAGTATCC
GATATGTTAACCGGGTTAGTTGGTTTCCCGATTTCAACATATGAGATGGT
TTCGGATCATATAGAAAGTTGTGATTTAGATAACATCCGTTCCATGGTTT
CTTTAATTCTAACAGGATCTTCAAATCTAACCCTGGCGCTCATCTCTTTT
GATCGTTGGCTCTTAATGTGCAAGTACACTCGCTATAATACTTTAATGAA
TAATAAAATTCTTCCAGTTTTGATAGTGATATGTTGGGTATACCCTGGTA
TCACAATATCACTGCGATATGTAGAAAACATTTACCCCTACCTTGCATCG
CTGGTGTTTATATTTTATGGACCCATTCTTTTCATTATCGTCTTTTACTT
TTTACTGGTCCGTGAAATATACAGAAGTGAGAAGAAATTGAACTTGCACG
GCCGTCGTCATATACTTGGCCAAAGCAATAAAGTATCTAATCTTCCTGCA
CCAGTCTCAACGTTATCCGTTCCTGACACGGCCAACAAACTAGCTGCGAG
GCAGGCTAAACGTTCACAAAGACGACATTTAAAAACAGCACGCGCGGTTG
CTTGGTTACTTGGTATATACTGTATCTGTATGGCGCCATTTAATTTATGG
CTTATTTTTAGTATTCTGAACCCTACATTCTCAATAATACAGAGAGAACC
GTTGCAACATTGGTACGTGTTCGGAATTTCCGTAGCTGGACTTAATTCGT
GTCTGAACCCGTTCGTTTATCTATCAAAGCAACCGGACGCAAGGAAACGA
CTACGGACTATCTTGAAGCTTGATAAGAATAAACCGAAAATGGACGGCTC
AAGAACCGATATGGGGACTGActccaaaatttaatttttgaattttgaaa
ttgaattttttgcacggttttgtttttattgtgtATTGATTGTTTTTCAA
TCTGTGTTATGTAGTAAATAATATTCATTGACATTTGACATTATTTTGAA
ACAACTCCAAGAAATGAGCCCTTAGAAAAGC Coding sequence (CDS) from alignment at sc0000396:92549..93929 >TCONS_00021906 ID=TCONS_00021906|Name=TCONS_00021906|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0000396:92549..93929 (Clytia hemisphaerica)
ATGTGCACGACTCATCGATTCTCGTTAATTGTACCACCGACAACTTACGT
TTACGGAACTCTATTTACAATTTTCGCGATCGTAGCTGCAGTCGGGAATA
TAATCGCTCTTTACATTTTATGGACAACCTCGCGACAAATCACCAAATCC
AACAAAATCCTTGTCTCGCTTGCAGTATCCGATATGTTAACCGGGTTAGT
TGGTTTCCCGATTTCAACATATGAGATGGTTTCGGATCATATAGAAAGTT
GTGATTTAGATAACATCCGTTCCATGGTTTCTTTAATTCTAACAGGATCT
TCAAATCTAACCCTGGCGCTCATCTCTTTTGATCGTTGGCTCTTAATGTG
CAAGTACACTCGCTATAATACTTTAATGAATAATAAAATTCTTCCAGTTT
TGATAGTGATATGTTGGGTATACCCTGGTATCACAATATCACTGCGATAT
GTAGAAAACATTTACCCCTACCTTGCATCGCTGGTGTTTATATTTTATGG
ACCCATTCTTTTCATTATCGTCTTTTACTTTTTACTGGTCCGTGAAATAT
ACAGAAGTGAGAAGAAATTGAACTTGCACGGCCGTCGTCATATACTTGGC
CAAAGCAATAAAGTATCTAATCTTCCTGCACCAGTCTCAACGTTATCCGT
TCCTGACACGGCCAACAAACTAGCTGCGAGGCAGGCTAAACGTTCACAAA
GACGACATTTAAAAACAGCACGCGCGGTTGCTTGGTTACTTGGTATATAC
TGTATCTGTATGGCGCCATTTAATTTATGGCTTATTTTTAGTATTCTGAA
CCCTACATTCTCAATAATACAGAGAGAACCGTTGCAACATTGGTACGTGT
TCGGAATTTCCGTAGCTGGACTTAATTCGTGTCTGAACCCGTTCGTTTAT
CTATCAAAGCAACCGGACGCAAGGAAACGACTACGGACTATCTTGAAGCT
TGATAAGAATAAACCGAAAATGGACGGCTCAAGAACCGATATGGGGACTG
Actccaaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021906-exon-sc0000396-1491911889:92549..93929 | TCONS_00021906-exon-sc0000396-1491911889:92549..93929 | Clytia hemisphaerica | exon |
| TCONS_00021906-exon-sc0000396-1510915933:92549..93929 | TCONS_00021906-exon-sc0000396-1510915933:92549..93929 | Clytia hemisphaerica | exon |
| TCONS_00021906-exon-sc0000396-1575043694:92549..93929 | TCONS_00021906-exon-sc0000396-1575043694:92549..93929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:92549..93929 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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