TCONS_00021893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021893
Unique NameTCONS_00021893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021893 ID=TCONS_00021893|Name=TCONS_00021893|organism=Clytia hemisphaerica|type=transcript|length=1767bp
attgcgataagcatgaaactttaaTATTGTAACATGAAGGTTTATGAATC
CAAGAAGGCACAGGAAATTATTCCAAACGAGAATGAACAGGCTATATTAC
AAGACTGGTATCGCATGCGAAGAAATAACTTAATCATCTTTTGCATATGC
AAATGTCTTTACAGCTTCGAATGTTCCGCCATTAGTATATCAGCTCTTTA
CTATTTCCAAAATGTCATCAAAGTTGGGAACCCAAATTTATACTACTCCC
TGGCAGTTGgcgcactttcgttttcgtccATATTCTCGTCGGCGCTGGTA
GGCCGAATGGTTGATCGATACCGAAATTTGCGCCAGACGTCCCTCTCTTT
GAGCTTGTTTAATTTTGCTGGGAATTTGCTGTACGTGTTACCGTTTGCGC
CATGGCTACCCATCATTGGCAGGTTCTTGTGCGGGATTTCAGATGGTGTG
AGACCAGCATACCAAGGGGAATTAACAAGAACATATTCATCAAAAGAACT
GACAAAGTATGGAACATTCTTACAGATGCTTGAAATTATTGCACATGCAG
TCGCTCCTGTTTCTCCTATGATCTTCAAGTGGGtcgatttcaaacttttc
gGTTTGAAATTCAACCAATACAATTTCGTTGGTGTTTTCTTAATGTTTAC
AACTATGATCTACCTGACCATGGCGTATTTCATGTTGTCAGACCTTACCA
AAGAGAAAGGATACCAAATCTTTTTAATTGAAGAGGAATTGGGGGAAAAT
CACACAAGCACCGGTGCAAATCACGaacatcaaaaacttttatcTATCAA
AAACATCCTCACAACTTTTGATATCATGTTGATTCTAACCACAATTCTAA
TACTGAATTATATCTATACTCAAGCCGAACTCGTCATCAACATCATCGCT
GTTGATAAATTCCAATGGACCGTTGAACATTTGGGTATTTTTTCAATCTC
AACGATTATCATTGCGCTCTCGGTAATGcatgttttgaaaagattgCATT
CTGGCGTTGATATCTATTACATTATCGTGTGTTTCGTCACTGGAAATGGA
CTGAGTATGGCTATTCTTGCATTCTTATCTAATTACGAGATCCGAAATGC
AGTGTTTCAATCCTTTCTAGTTTTATCAATAATGTCTTTGAACATAATTG
CAGGATACAGTGCCTCAATTTTCACTACCTTTGCAATCGCCTTGGTTGTT
CCTGTCCATTCAAGATGTTTCGTTGTTGGATTAAGACAAGTTTCCATGAA
ACTTGCTTTATGTTTGGGTTATTTTAGTACAACACTTCTGTATAATGTTA
GTATTATATCTTACCCTATTATGTCATTATGCTGTTTTGCGTTATCTTTT
ATATATTTATGTAATAGCTTCagatttataagaaaatattgTCGAAGACT
GTAAAGTAGGGCAAAAAATCTCACGAATTTCCTCATGCCAATGTACTTGT
TATACATTCATGGACAGCTTATCCATTTGGAAATCGAAATTGTGATGTTG
CTAATTTTTTTCATCACTGGTGCATTTCACCAATTTTAATTGTAAATTAT
AAACTTGATTTGATTAATTTGCTTCAATAGATACCTTTTGGGTAAAAGCC
ACCTAGGTTCTCATTGTCCCCAGATATTATATATATTCAATACTATTTAT
TAAGttatttataattgaaaatcgtttttttagtattttcctAATTCGAC
ATTGCCTCGCGACAGTGCCTAGTCTTACACTTTTATACGCTAGTTTTGAC
CCAAGTCCTTTATTTCT
Run BLAST on NCBI

transcript from alignment at sc0000396:68246..74246-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021893 ID=TCONS_00021893|Name=TCONS_00021893|organism=Clytia hemisphaerica|type=transcript|length=6001bp|location=Sequence derived from alignment at sc0000396:68246..74246- (Clytia hemisphaerica)
ATTGCGATAAGCATGAAACTTTAAGTAATGTATTTTTAACCTTGTGAATT
TTCGAAAGATATAATCTATGATTCGCTCTACGANAACCTTGTAAATTTTC
GAAAGATATAATCTATAATACCTTTTTGAATGTTGTAAATTGAAATTCGA
TTTGAATTTTTAAAAACTATACTTGTGGTCATAGTGCATAGAAGACACCG
GAACGTAAAGAAATGAATAAAATTTCAATTTCAATTCACTTTTGTTATTA
CGATTTAATATAATTTAATTATTGACAAATAGAATAACCAGAAGCATTTT
TGTTTTTTATTAAAAACTATAAATTCGACCTCACTCACAAGAGGTCATCA
TCAGAGTAAAAAATCTAATACAGAATGATTTTTTACTCTGATGATGACCT
CTTGCATGCATGCATGTTCCGTTCAATCAATTTTTGACGAAATTTCTGGT
CAAAAAATTGAATTTCGATGGTAATTTTCAATTTTCAAATTTCGAGTTAA
AAAAATGAAAATTGAATTTTAATTCAAAGTTTCAATGTTAGTTTTTTTAT
TGCTAGAAATAAACTGAGATTTCCAGTATCGTCTTTGATTTTCTAATATA
AACTTCTTGCATTAAAAATTGAAAATAATATTTTCAAATAATGAAAATTC
TGCGTGAAAAATTGAATTTGACAAAACCAAATCAATTTGTAAAAAAGACG
TCTCGGATAAAAAAATTGAAAGTTGAAAATGATTTACAATCAGTTACAAA
GAAGATGAAGGAAACAATAGTTTTATTCAGTCGCTTCTTTGTTAGTCTAA
TTTATCTCTACCTCGAGGAGTTAGGTCATTTGAAACTTTCTGATTACACA
GTACATCAAAGGTCCCTTAGTTGACAGGTAGCTGTGCCACTGAGGTTGAA
GAAATTTCATTCCTAACACAGTCCTGTGTATCCTAAAGACTTAATCAAGC
ACTTTCTAAATAATTTTTTTATAAGAACCAGTAAGTATACTTTGGCTCAG
GCCGGGATGTTCTTAATTTTTTGAATTTTTCAGGCTTAAATGTTCTTACG
ATGTTTTTTACTTGAGAACTTAAAATAGATTTGAAATCAGTATTTTTTCA
AAAATCTGAGGCTCAGATTGTTCTTAATTTGTTCTTAGGTTTTGGCCTAA
ATTTCAGCCTCGCTTTCTTGTAAAATTGTTCTTATAAAAAAGGGCGTTGC
TCAATAAAAAAGGCACACTGCAGGACTGTGTTTGCAGACAAAGACCAAAG
AGTATCCGAAGAGTATATATTACGTAAAGGAAATTTTTCCACGTGAATTT
TATGTCATAGTGTATTTACCCAGAAGGAAATTAAACTGCCAAAGACCTGG
GAACTAGACAGCAACAAACAATAAAACATTCTACATTTTTGTTCTTTTTT
GGTACCGATGAAACACTACTTGTTTTGAAAATCTGTTTTCATGGAAAAGC
AAGCGTGATGAAAAATTGGTTTTGTTTTGACAATTCTTCAATTTTTCACG
ACACATTTTCAGTATTTGAAAATATTATTTTCAATTTTCGATGCAAGAAG
TTTATATTAGAAAATCAAAGATGATATTGGAAATTTCAGTTCATTTCTGG
TAATAAACAAAACAAAAATTGAAATTTGCAATCAAAATTTAATTTTCAAT
TTTTTAACTCGAAAATTTAAAAATTGAAAATTGAATATTGCCATCGAAAT
TCAATTTTTTGACCAAAAATGTCGTCAAAAATTGAATGAACGAAACATGC
ACACACAATCCGTGACCCGAAAGTATCATTTGATTTTTGATTTAAAATCA
AATCGAATTTCAGAAGAAAATTGATTTTCAATTATCCCTCACCGATTAAA
AATCAAATTTCAAACCAATTCTTGATTTTTGTTTTTTAAATCAAATATTG
CATTTATCTCGATTTATCTGAGATGAGAGCCTGTTCTTGGGAAGCACACT
TGTCCAAATGGGACTCGGTTATCTTTCCATGTCACTGACACACATATGGT
ACATGAAATTTTGTCCGACTAAAAGTACGTAGGCAAACATACTGTAATGA
TTTTCGAAAATCACTTTCAATTTCTGATTTTTAATTTTCGATTTTCTAAT
TTTCTAAGAAAGACACGCATTCTATTCGAACATTTTTATGAGAATAATAA
GGCTAAAAAATGCCAGTAAACAAAAATTGATTTAGCCTGTATTTGAGTTT
TCATCGTTGAAACAAGGTATAAAGGTTGAAAGATTGTAAGTCTTAGAAAT
TAAGAACAGTTAAGGATGTATCTTCATTAATAATTGTATTAAAAAGTACC
ATGTCCATCCTTATGAATTTGAGGGTGTTCCTTGGGCTTGGATTTTCTGG
TGATTCCTGATATGTTCCTGGACCTCTGCGCAAAATATCTTCTCTACACC
ATTTTTTTTGTCCGGGTAGTTATGCAATTCTACCTGACTATTTCCTTCGT
TATTACCATTGTTACACGTGGTAGGTTTGTGTACCTTTTAGAAAGAGGAA
CGTAACGAGGAGAGGATCTTTTAAATTTGGAAACGAAATTGTGTAAGCGA
TTTTCCTTAAATGTATTCCTAATAATCATAATTTGTTGCTTTAGTTAAAG
AAAAATAATAAGTACTCTGGTAGTGTTACAAAAGAAACACAACCAAAACT
AAAAGGTCCAATCATGTCCAATTCAGCCACGGTAAAAACGTGTAATTTCA
AAAAAATCTGAAAGGTTTTCTACACTTTTTTTTATAAGAACCAGTAAAAC
CTTTCTGAGGCTCGGCTGTTCTTATTTTTTTGACAGTTTGAGCATGAAAT
TTTTCTTATTCTGTTCTTATTTTTAGGCTGTATTTGAGGTATTTTAGACG
TTATACCCAATTTTTACCACTTTTGCCCCTAAATTGCTTGAAATTTAGTA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCTTATAAAATTGTTCTTATAAAAAAAAGT
GTACTCATTTTAGTTTTTTTACAATCGCACTTTTTGAAACACCCGGTATC
TATGCGCAAAGTAAGGTTGAAATTCATTATTGTACGCTTGCTTCAGAGTA
ACAGTTAGTCGGACAAAATTTCATGTACCATGTTTGTGTGTCAGTGACAT
GGAAAGATAACCGAGTCCCATTTGGACAAGTGTGCTTCCCAAGAACAAGG
CTCTCATCTCAGATAAGTGCAATATTTGATTTAAAAATCAAAAATCAAGA
ATTGGTTTGAAATTTGATTTTTAATTGGTGAGGGATAATTGAAAATCAAT
TTTCTTTTGAAATTCGATTTGATTTTAAATCAAAAATCAAATGATACTTT
CGGGTCACGGATTGAAATCAAACATTAAAAAGAAATCAAAAAGAAATCAA
AAATCAAAAAGAAATCAAAAAGAAATCAGAAATCAAAAAGAAATCAAAAA
GAAATCAAAATGAAAATCAAAAAAAANACACACGCCTCTTGTGAGTGAGG
TCGAATATATAGTTTTTAATAAAAAACAAAAATGCTTCTGGTTATTCTAT
TTTTCATTAAGCTGTTAGCCCAACGAAACACATTTCAAAATCCAATCATT
AAACTAATTCGTCCGGCAAGTAAATAATAAAGAAAAAGTTGCTTGATAAT
TAGTTTTGCAAACGAAATCGCAATTTTCTTCTTTTTCAATCAATAGTATT
GTAACATGAAGGTTTATGAATCCAAGAAGGCACAGGAAATTATTCCAAAC
GAGAATGAACAGGCTATATTACAAGACTGGTATCGCATGCGAAGAAATAA
CTTAATCATCTTTTGCATATGCAAATGTCTTTACAGCTTCGAATGTTCCG
CCATTAGTATATCAGCTCTTTACTATTTCCAAAATGTCATCAAAGTTGGG
AACCCAAATTTATACTACTCCCTGGCAGTTGGCGCACTTTCGTTTTCGTC
CATATTCTCGTCGGCGCTGGTAGGCCGAATGGTTGATCGATACCGAAATT
TGCGCCAGACGTCCCTCTCTTTGAGCTTGTTTAATTTTGCTGGGAATTTG
CTGTACGTGTTACCGTTTGCGCCATGGCTACCCATCATTGGCAGGTTCTT
GTGCGGGATTTCAGATGGTGTGAGACCAGCATACCAAGGTAACTCTAATT
TGAGATTTTCACTTCAGAGCTTTTGTTACATGAAAAGAAAAGACACAGTG
CTAGATACTCATCATACGGCAACTAATTTTGAGGGAACAGGAAATTTTTC
TTCAGACATTTTCAAACAACCCTCCCAAGTTACAATTACAAACTTCCAAG
AAATCTACAAAAATTAGTAAGACACCCTACCAACAGGAAAACATCAGCTA
TAAAATCGTTCCCAATCTGGGAATCTGCTAAAAAGCCAAATCTCTGTACT
TATGAAATAATTTCAAAATCTATTAAAAAAGATTTTATCCCAGATTCATT
CTGACCTGATCACCTCGCTGATACAGGGAGAGGTGGAGAAAGCAACGTGT
TTCCATATAACAAATATAAATATAAGAATTTCTATTCCAATTATTTTCAG
GGGAATTAACAAGAACATATTCATCAAAAGAACTGACAAAGTATGGAACA
TTCTTACAGATGCTTGAAATTATTGCACATGCAGTCGCTCCTGTTTCTCC
TATGATCTTCAAGTGGGTCGATTTCAAACTTTTCGGTTTGAAATTCAACC
AATACAATTTCGTTGGTGTTTTCTTAATGTTTACAACTATGATCTACCTG
ACCATGGCGTATTTCATGTTGTCAGACCTTACCAAAGAGAAAGGATACCA
AATCTTTTTAATTGAAGAGGAATTGGGGGAAAATCACACAAGCACCGGTG
CAAATCACGAACATCAAAAACTTTTATCTATCAAAAACATCCTCACAACT
TTTGATATCATGTTGATTCTAACCACAATTCTAATACTGAATTATATCTA
TACTCAAGCCGAACTCGTCATCAACATCATCGCTGTTGATAAATTCCAAT
GGACCGTTGAACATTTGGGTATTTTTTCAATCTCAACGATTATCATTGCG
CTCTCGGTAATGCATGTTTTGAAAAGATTGCATTCTGGCGTTGATATCTA
TTACATTATCGTGTGTTTCGTCACTGGAAATGGACTGAGTATGGCTATTC
TTGCATTCTTATCTAATTACGAGATCCGAAATGCAGTGTTTCAATCCTTT
CTAGTTTTATCAATAATGTCTTTGAACATAATTGCAGGATACAGTGCCTC
AATTTTCACTACCTTTGCAATCGCCTTGGTTGTTCCTGTCCATTCAAGAT
GTTTCGTTGTTGGATTAAGACAAGTTTCCATGAAACTTGCTTTATGTTTG
GGTTATTTTAGTACAACACTTCTGTATAATGTTAGTATTATATCTTACCC
TATTATGTCATTATGCTGTTTTGCGTTATCTTTTATATATTTATGTAATA
GCTTCAGATTTATAAGAAAATATTGTCGAAGACTGTAAAGTAGGGCAAAA
AATCTCACGAATTTCCTCATGCCAATGTACTTGTTATACATTCATGGACA
GCTTATCCATTTGGAAATCGAAATTGTGATGTTGCTAATTTTTTTCATCA
CTGGTGCATTTCACCAATTTTAATTGTAAATTATAAACTTGATTTGATTA
ATTTGCTTCAATAGATACCTTTTGGGTAAAAGCCACCTAGGTTCTCATTG
TCCCCAGATATTATATATATTCAATACTATTTATTAAGTTATTTATAATT
GAAAATCGTTTTTTTAGTATTTTCCTAATTCGACATTGCCTCGCGACAGT
GCCTAGTCTTACACTTTTATACGCTAGTTTTGACCCAAGTCCTTTATTTC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012284XLOC_012284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021893-exon-sc0000396-1575043694:74223..74246TCONS_00021893-exon-sc0000396-1575043694:74223..74246Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1575043694:69959..70400TCONS_00021893-exon-sc0000396-1575043694:69959..70400Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1575043694:68246..69546TCONS_00021893-exon-sc0000396-1575043694:68246..69546Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1510915933:74223..74246TCONS_00021893-exon-sc0000396-1510915933:74223..74246Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1510915933:69959..70400TCONS_00021893-exon-sc0000396-1510915933:69959..70400Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1510915933:68246..69546TCONS_00021893-exon-sc0000396-1510915933:68246..69546Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1491911889:74223..74246TCONS_00021893-exon-sc0000396-1491911889:74223..74246Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1491911889:69959..70400TCONS_00021893-exon-sc0000396-1491911889:69959..70400Clytia hemisphaericaexon
TCONS_00021893-exon-sc0000396-1491911889:68246..69546TCONS_00021893-exon-sc0000396-1491911889:68246..69546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:68246..74246 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.48722	1.17617	1.05377	1.42184e-09	0	0	0.409866	0.133528	0.127882	1.23174e-07	0.573784	0.0728278	0	0.283099	0.0888442	0.582801	0.376076	0.525635	0.0968257	0.531936	0.941033	1.44976	1.8209	1.96098	7.9091e-06	0.00924427	0.874273	0.733109	1.33954	0.931299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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