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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021875 ID=TCONS_00021875|Name=TCONS_00021875|organism=Clytia hemisphaerica|type=transcript|length=761bp
CAAGGATTCAGGAGGAGGGGAGCAAAGAAACTTTTCCGTTTGTGGATGGA
TGTACAGCTAACAGACTCTGTTTATGCACTGACCCACATCATTAAAATCT
GTCGAGTCTAGCTCAGGAAAACTAGCAAAGACAAATATCCTAAGATGGAT
CTTTTCACGTCCTCAGAGATCGATGGCGAAGATGTATTTTCAAGCAATAA
TTTCGTAGACAATTACTTTCACTTTCCAACCCCACCTTCTGGCTCTGATG
ATGGTTACTGGACAGATTCGATGAGCAGTTTATCACCGTCCTCTATCTTC
TCTGGTCAAAACAGTTATGGGGAATCGACAGACTTTCCTCGTCAATTTTC
ATGTGGAAATTCTAGTCATTTGAAAGAAACTCGTTACCAAAAAAACGGTG
AAGTTACAGAATTCATCAATGGAAGTTCCGGTGATCTTGAACGTGTATCT
ATTGATAATCTTGGCACTTTtcctgtatttcaaaatgatCACAGCCTGTT
CTCTTTACCTCCACCGACTTCTCTGATGAATTTTCCTGGTAATCATGATA
TCCACATGGAGAATCTAAAAGACGAATTGTTTTGTGGATTCCATGAAGAA
CTAGTAAAGCAATGTGATGTAGCACTAAACGGTACACACGACTGTAAACT
GGATACTTCAAAAGATATTCAAAGTTTGAGAAGTCCGTTTGATGGTTTTC
CTGATTCAAATCTGTCATGCACTGGAAAGAGGCTCTCTAATAATGTAAGC
CATGATGCGTC Run BLAST on NCBI protein sequence of TCONS_00021875-protein >TCONS_00021875-protein ID=TCONS_00021875-protein|Name=TCONS_00021875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MDLFTSSEIDGEDVFSSNNFVDNYFHFPTPPSGSDDGYWTDSMSSLSPSS
IFSGQNSYGESTDFPRQFSCGNSSHLKETRYQKNGEVTEFINGSSGDLER
VSIDNLGTFPVFQNDHSLFSLPPPTSLMNFPGNHDIHMENLKDELFCGFH
EELVKQCDVALNGTHDCKLDTSKDIQSLRSPFDGFPDSNLSCTGKRLSNN
VSHDA Run BLAST on NCBI transcript from alignment at sc0000396:117487..124721+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021875 ID=TCONS_00021875|Name=TCONS_00021875|organism=Clytia hemisphaerica|type=transcript|length=7235bp|location=Sequence derived from alignment at sc0000396:117487..124721+ (Clytia hemisphaerica)
CAAGGATTCAGGAGGAGGGGAGCAAAGGTGCGTGGGTATCTTTCTACTGC
ATACCTCAATCAACATATAGTGCTCTCAGATTTTAATTAGTTTTAAGAAG
GATTGGGGAAAGCTTACTGAATTGGAAGGTTTATTTTTGGGTGATTGTTG
GTTTGAGACGTTGTTTAAGACTTGGTTTCGTGGATCTTGCTGGAGATCAT
TTTATTGACAGTGTAAATGCAACTTTACGGGTGAACGTAATAACGTGAAC
GTATCTTGTTCATTAGTttactttttgataattctGATGTACTACGTCCG
TtaataaaatcagaaaatagTATGCAAGTCGATCTGCTGAGATTGTTCAG
CAGGCCCGACGGAAGCGGGGAGTCTGGGGAGACCACATCTCCCCCACTTT
CATGGTTTGTATATATACTATTGAGATTGAGACATCGACACTTTTTTATA
CAGAAACTTTTCCGTTTGTGGATGGATGTACAGCTAACAGACTCTGTTTA
TGCACTGTCCCACATCATTAAAACCTGTCGAGTCTAGCTCAGGTATTTGT
CTATTTGATTAAAGGTTTTCAGATTTCTGTAAGTGCAAAGATATTAGTGA
TTCAAACTTTTAAAGCAATGGAAATTTCTCtattacaactttttaaaatt
gatgtaatctACTGCCTTCCTTTAATCACATTCCAATGTTTAGTGAAATC
ATACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNccccccaataattttttcaaaaatggttattttgcaaaa
tacaaagtttttctttattaatttgtcataattgtcacaattgagtgcat
tttcaagcaatctagagctcaaattttcaaaaccccccccccctcgggcc
aaaccatggttggccctcacggtgtcactaaacttcagccccccccccaa
taggAAAATgtttcctacggcactgatgaATAAGATTTGGTTTCTATATA
TAAGGACGTTTAGGTGCTCGTTAACATTTTTAATTCTGGTTGGTATATAT
AGCAATACGGTGACATTCAGCTAATTGCTCAAATCGCTTCAAAATTCACT
TTCATCTCTGCACGGAGTCTGCTTTCATCGATCAATTATAATATTGATgc
cagtgccgtaggaagcatttccatattggggggggggctgaagtttagtg
acaccgcgagggccaaccatggtttggcccgaaaggggggattttgaaaa
tttgagctctatatagcttgaaaatgcactcaattgtgacaattatgaca
aattaaaaaagaaaaacttttgcaaataaccatttttgaaaaaattattg
ggggccATAGCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCC
ACTTTCATGGTTTGTATATATACTATTGAGATTGAGACATAGACACCTTT
TTATACAGAAACTTTTCCGTTTGTGGATGGATGTACAGCTAACAGACTCT
GTTTATGCACTGACCCACATCATTAAAATCTGTCGAGTCTAGCTCAGGTA
TTTGTCTATTTGATTAAAGGTTTTCAGATTTCTTTGAGCGCAAAGATATT
AGAGATTCAAACTTTTAAAGCAATGGAAATTTCTCtattacaacttttta
aaattgatgtaatctACTGCCTTCCTTTAATCACATTCCAATGTTTAGTG
AAATCATACTAGTTTAGTCTGAATAATTCTTTGTTAATTCTCTCAATGAT
AAAAACGATTCTAATCGCATTAAAGGGTGGTATTAGACTTTATGAAAATC
CATTTAAGAAAGGAAGTAAATTTTTAACCACTTAGATTTATCAAGTTCCT
CTAAGTTTTAAAAACGTTTTACAAAGCACCTAATTCACTGAGATAAAAAT
TGAATCAGCTATAGAGAAATTCATTTTGATGGGTTCCCCGCTAAGAATTT
TTCGTTGCTTTTGACTTGtctttcaaaaatctttctattttttaagtaGG
AGAAAGCATCTTTTAGAGGGGGGCTCATGGCCCCTtgaaaccttgaaatt
ttgaccagatGATTTGTTGTTTTGCAAAAGTTTTGTTGGGACACCTGTCT
GGTTTGTATTTTACAGATGAGAATGTAAGGTTTGGCTAAGATTGCGTATT
GACCGATTGGCTCATTCGATTTGATTGAACTTTTTTTGAAGGCTGGTTTG
TAAAATAGAGACTTATAACGGAATAAAATTGGCCCCATAAATATTAGTAC
TTTTAGTCCAGACAGACCTACGATAAATGATCGATGTTAGAGTGGGTACT
CGGTGCATCACCAAGAAgatgaaagttaaaaaaatttcttctaattttat
ctaaaaatcttaaaaaatctcAATCACACTTTGGGCAGTTTGTAATCGGC
AGATCTTATTGTGAATCTAccttatcagccctttttacAACGGCTCCAAT
TTAACGCCGGCCTCTTTTACACTNccccccctcccccccccccccccagt
tgctacggcacggCACTGGATGCTCAATTATAGAAACATTTTGATGGTTT
GGCTGGTGGTCTTAAGAAAAGTATTTTTATGAAGTAGTTCTGCTTCGATG
TTGTTTTAGGAAAACTAGCAAAGACAAATATCCTAAGATGGATCTTTTCA
CGTCCTCAGAGATCGATGGCGAAGATGTATTTTCAAGCAATAATTTCGTA
GACAATTACTTTCACTTTCCAACCCCACCTTCTGGCTCTGATGATGGTTA
CTGGACAGATTCGATGAGCAGTTTATCACCGTCCTCTATCTTCTCTGGTC
AAAACAGTTATGGGGAATCGACAGACTTTCCTCGTCAATTTTCATGTGGA
AATTCTAGTCATTTGAAAGAAACTCGTTACCAAAAAAACGGTGAAGTTAC
AGAATTCATCAATGGAAGTTCCGGTGATCTTGAACGTGTATCTATTGATA
ATCTTGGCACTTTtcctgtatttcaaaatgatCACAGCCTGTTCTCTTTA
CCTCCACCGACTTCTCTGATGAATTTTCCTGGTAATCATGATATCCACAT
GGAGAATCTAAAAGACGAATTGTTTTGTGGATTCCATGAAGAACTAGTAA
AGCAATGTGATGTAGCACTAAACGGTATTTAATTCTTTTAAACGCTCTCA
TAAATCTCTCCACCAGAACCACCCTAGCAAACAATTTTCTCGGTCGAAAG
TTGGCaatctttaaatattttgaatatttagaCCCCGATAATTCTTTtgc
taattttatttgaaagttatTTACTTTTCAGTTTCAAGTGATAATGCTAA
TCAAACTAATATTAAATTCAATGTCGCAATGAGCTTCTTGACCTTGAATA
TGTTTTTTAAGAATTGAAACACAAAAACACCCCTTACAGCCCTAGTGAAA
CTTTTTccaatcccaatggggatacaAATTTAGTTCCTTGGTCAAAAAAT
CCAGTTTTGGAATTGaattaaattgaattttaaatgagGATGgaaacaaa
gtcaatttttcagaGGGGCAGAAATTGTCGGGTATTTCACCGCTTCGGAC
GAAATTTTAGCTAAGTTTTCCAGTGGGTGGGGTCCCAcctggtctgtgac
acaggcGTGTAAAACAGGTCTACTTTGAATGACTGAGATCATCTTTTTCG
CATAGGTACACACGACTGTAAACTGGATACTTCAAAAGATATTCAAAGTT
TGAGAAGTCCGTTTGATGGTTTTCCTGATTCAAATCTGTCATGCACTGGA
AAGAGGCTCTCTAATAATGTAAGCCATGATGCGTC Coding sequence (CDS) from alignment at sc0000396:117487..124721+ >TCONS_00021875 ID=TCONS_00021875|Name=TCONS_00021875|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0000396:117487..124721+ (Clytia hemisphaerica)
ATGGATCTTTTCACGTCCTCAGAGATCGATGGCGAAGATGTATTTTCAAG
CAATAATTTCGTAGACAATTACTTTCACTTTCCAACCCCACCTTCTGGCT
CTGATGATGGTTACTGGACAGATTCGATGAGCAGTTTATCACCGTCCTCT
ATCTTCTCTGGTCAAAACAGTTATGGGGAATCGACAGACTTTCCTCGTCA
ATTTTCATGTGGAAATTCTAGTCATTTGAAAGAAACTCGTTACCAAAAAA
ACGGTGAAGTTACAGAATTCATCAATGGAAGTTCCGGTGATCTTGAACGT
GTATCTATTGATAATCTTGGCACTTTtcctgtatttcaaaatgatCACAG
CCTGTTCTCTTTACCTCCACCGACTTCTCTGATGAATTTTCCTGGTAATC
ATGATATCCACATGGAGAATCTAAAAGACGAATTGTTTTGTGGATTCCAT
GAAGAACTAGTAAAGCAATGTGATGTAGCACTAAACGGTACACACGACTG
TAAACTGGATACTTCAAAAGATATTCAAAGTTTGAGAAGTCCGTTTGATG
GTTTTCCTGATTCAAATCTGTCATGCACTGGAAAGAGGCTCTCTAATAAT
GTAAGCCATGATGCGATGGATCTTTTCACGTCCTCAGAGATCGATGGCGA
AGATGTATTTTCAAGCAATAATTTCGTAGACAATTACTTTCACTTTCCAA
CCCCACCTTCTGGCTCTGATGATGGTTACTGGACAGATTCGATGAGCAGT
TTATCACCGTCCTCTATCTTCTCTGGTCAAAACAGTTATGGGGAATCGAC
AGACTTTCCTCGTCAATTTTCATGTGGAAATTCTAGTCATTTGAAAGAAA
CTCGTTACCAAAAAAACGGTGAAGTTACAGAATTCATCAATGGAAGTTCC
GGTGATCTTGAACGTGTATCTATTGATAATCTTGGCACTTTtcctgtatt
tcaaaatgatCACAGCCTGTTCTCTTTACCTCCACCGACTTCTCTGATGA
ATTTTCCTGGTAATCATGATATCCACATGGAGAATCTAAAAGACGAATTG
TTTTGTGGATTCCATGAAGAACTAGTAAAGCAATGTGATGTAGCACTAAA
CGGTACACACGACTGTAAACTGGATACTTCAAAAGATATTCAAAGTTTGA
GAAGTCCGTTTGATGGTTTTCCTGATTCAAATCTGTCATGCACTGGAAAG
AGGCTCTCTAATAATGTAAGCCATGATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021875-exon-sc0000396-1491911889:117487..117513 | TCONS_00021875-exon-sc0000396-1491911889:117487..117513 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1510915933:117487..117513 | TCONS_00021875-exon-sc0000396-1510915933:117487..117513 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1575043694:117487..117513 | TCONS_00021875-exon-sc0000396-1575043694:117487..117513 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1491911889:122395..122483 | TCONS_00021875-exon-sc0000396-1491911889:122395..122483 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1510915933:122395..122483 | TCONS_00021875-exon-sc0000396-1510915933:122395..122483 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1575043694:122395..122483 | TCONS_00021875-exon-sc0000396-1575043694:122395..122483 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1491911889:123546..124060 | TCONS_00021875-exon-sc0000396-1491911889:123546..124060 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1510915933:123546..124060 | TCONS_00021875-exon-sc0000396-1510915933:123546..124060 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1575043694:123546..124060 | TCONS_00021875-exon-sc0000396-1575043694:123546..124060 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1491911889:124592..124721 | TCONS_00021875-exon-sc0000396-1491911889:124592..124721 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1510915933:124592..124721 | TCONS_00021875-exon-sc0000396-1510915933:124592..124721 | Clytia hemisphaerica | exon |
| TCONS_00021875-exon-sc0000396-1575043694:124592..124721 | TCONS_00021875-exon-sc0000396-1575043694:124592..124721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:117487..124721 + |
Blast
The following BLAST results are available for this feature:
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